Wall clock time and date at job start Wed Apr 1 2020 04:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47135 * 2 1 4 4 C 1.36931 * 120.00290 * 275.30980 * 3 2 1 5 5 H 1.07995 * 120.00489 * 37.57276 * 4 3 2 6 6 C 1.38817 * 120.00055 * 217.57558 * 4 3 2 7 7 N 1.31625 * 119.99905 * 21.43262 * 6 4 3 8 8 Si 1.86800 * 120.00019 * 201.43172 * 6 4 3 9 9 H 1.48494 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46871 * 120.00090 * 8 6 4 11 11 H 1.48500 * 109.47021 * 240.00114 * 8 6 4 12 12 C 1.46502 * 119.99629 * 95.30874 * 3 2 1 13 13 C 1.53004 * 109.47073 * 269.99956 * 12 3 2 14 14 C 1.53005 * 109.46874 * 180.02562 * 13 12 3 15 15 N 1.46503 * 109.46716 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99809 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.50705 * 120.00071 * 180.27805 * 16 15 14 19 19 C 1.50694 * 109.46974 * 179.72378 * 18 16 15 20 20 C 1.34246 * 126.49474 * 265.01738 * 19 18 16 21 21 N 1.36806 * 109.92879 * 179.97438 * 20 19 18 22 22 H 0.97005 * 125.06612 * 180.02562 * 21 20 19 23 23 C 1.37812 * 109.86772 * 0.02562 * 21 20 19 24 24 C 1.39097 * 133.39730 * 180.02562 * 23 21 20 25 25 C 1.37725 * 119.94958 * 179.30796 * 24 23 21 26 26 C 1.39031 * 120.64804 * 0.56230 * 25 24 23 27 27 F 1.35096 * 119.83326 * 179.62138 * 26 25 24 28 28 C 1.37788 * 120.33527 * 359.63738 * 26 25 24 29 29 C 1.39678 * 119.62949 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47467 * 300.00204 * 1 2 3 31 31 H 1.09002 * 109.46651 * 60.00173 * 1 2 3 32 32 H 1.08997 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47584 * 239.99880 * 2 1 3 34 34 H 1.08999 * 109.47010 * 120.00188 * 2 1 3 35 35 H 0.96995 * 119.99492 * 179.97438 * 7 6 4 36 36 H 1.09008 * 109.47034 * 150.00090 * 12 3 2 37 37 H 1.08996 * 109.47461 * 30.00030 * 12 3 2 38 38 H 1.08995 * 109.47247 * 60.00357 * 13 12 3 39 39 H 1.09004 * 109.47039 * 300.00027 * 13 12 3 40 40 H 1.09002 * 109.46938 * 60.00469 * 14 13 12 41 41 H 1.08996 * 109.47475 * 299.99961 * 14 13 12 42 42 H 0.97003 * 120.00114 * 0.02562 * 15 14 13 43 43 H 1.09003 * 109.46577 * 299.72585 * 18 16 15 44 44 H 1.08997 * 109.46838 * 59.72089 * 18 16 15 45 45 H 1.07997 * 125.03788 * 359.93886 * 20 19 18 46 46 H 1.07998 * 120.02417 * 359.94801 * 24 23 21 47 47 H 1.08002 * 119.67215 * 180.20531 * 25 24 23 48 48 H 1.07997 * 120.18868 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3027 2.7981 -0.6489 8 14 3.0993 4.2798 -2.6582 9 1 1.7776 4.2136 -3.3319 10 1 3.2550 5.6024 -2.0012 11 1 4.1766 4.0966 -3.6637 12 6 2.3731 2.0326 1.2634 13 6 1.1424 2.7382 1.8366 14 6 1.5132 3.4190 3.1557 15 7 0.3350 4.0951 3.7043 16 6 0.4250 4.7670 4.8691 17 8 1.4812 4.8115 5.4635 18 6 -0.7886 5.4572 5.4366 19 6 -0.4246 6.1237 6.7382 20 6 -0.5810 5.6109 7.9690 21 7 -0.1375 6.5036 8.9060 22 1 -0.1482 6.3566 9.8648 23 6 0.3268 7.6427 8.2847 24 6 0.8745 8.8319 8.7546 25 6 1.2673 9.8068 7.8646 26 6 1.1118 9.6210 6.4956 27 9 1.4958 10.5915 5.6378 28 6 0.5677 8.4523 6.0093 29 6 0.1713 7.4521 6.9001 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.0491 3.4027 -0.7834 36 1 3.1617 2.7641 1.0861 37 1 2.7254 1.2833 1.9722 38 1 0.3540 2.0068 2.0139 39 1 0.7902 3.4876 1.1278 40 1 2.3015 4.1506 2.9780 41 1 1.8657 2.6700 3.8647 42 1 -0.5100 4.0592 3.2291 43 1 -1.1428 6.2082 4.7304 44 1 -1.5752 4.7234 5.6117 45 1 -0.9960 4.6380 8.1872 46 1 1.0011 8.9863 9.8159 47 1 1.6951 10.7271 8.2342 48 1 0.4484 8.3102 4.9454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752214543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:29 Heat of formation + Delta-G solvation = -36.082733 kcal Electronic energy + Delta-G solvation = -29337.639459 eV Core-core repulsion = 25113.767709 eV Total energy + Delta-G solvation = -4223.871750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.81863 -42.25975 -40.45967 -38.16810 -37.57341 -36.08528 -34.12265 -33.80193 -32.73210 -31.30194 -30.20002 -29.90370 -28.33097 -26.74460 -25.11478 -24.07938 -22.92949 -22.56994 -22.09846 -21.65009 -20.32018 -18.98657 -18.60455 -18.28478 -17.84111 -17.26831 -17.04634 -16.65989 -16.59506 -16.56026 -16.18328 -15.77834 -15.51190 -15.22105 -15.10099 -14.84249 -14.39611 -14.34080 -14.14087 -14.05355 -13.87493 -13.77119 -13.43190 -13.22312 -13.17260 -12.80918 -12.68558 -12.62901 -12.51707 -12.27973 -12.27469 -12.10929 -11.91453 -11.78500 -11.44232 -11.22667 -10.96912 -10.58246 -10.49542 -10.00660 -9.13847 -8.63812 -8.53749 -7.80199 -5.44318 -0.00288 0.39509 1.43559 1.47815 1.56794 1.59563 1.77923 2.20681 2.42344 2.52214 2.74135 3.25375 3.31591 3.64948 3.69327 3.83220 3.97276 4.08140 4.15782 4.18927 4.31461 4.38142 4.45565 4.48157 4.57880 4.66126 4.69972 4.75499 4.78129 4.81294 4.85458 4.91302 5.06126 5.06618 5.07944 5.18734 5.21525 5.29981 5.35913 5.48605 5.54367 5.62956 5.64364 5.71153 5.71401 5.86132 6.08596 6.48944 6.69286 6.71822 7.19722 7.40206 7.90147 8.42223 9.14172 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.002251 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.663757 B =12438.138067 C =14132.282455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.260 4.260 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.293 1.293 11 H -0.292 1.292 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.135 3.865 15 N -0.719 5.719 16 C 0.504 3.496 17 O -0.585 6.585 18 C -0.056 4.056 19 C -0.188 4.188 20 C 0.090 3.910 21 N -0.578 5.578 22 H 0.435 0.565 23 C 0.072 3.928 24 C -0.089 4.089 25 C -0.141 4.141 26 C 0.048 3.952 27 F -0.155 7.155 28 C -0.129 4.129 29 C -0.092 4.092 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.249 0.751 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.111 0.889 44 H 0.141 0.859 45 H 0.210 0.790 46 H 0.166 0.834 47 H 0.159 0.841 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 7.478 22.879 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.390 4.390 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.188 1.188 10 H -0.220 1.220 11 H -0.219 1.219 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.010 3.990 15 N -0.372 5.372 16 C 0.291 3.709 17 O -0.464 6.464 18 C -0.096 4.096 19 C -0.195 4.195 20 C -0.038 4.038 21 N -0.182 5.182 22 H 0.276 0.724 23 C -0.035 4.035 24 C -0.109 4.109 25 C -0.161 4.161 26 C 0.028 3.972 27 F -0.134 7.134 28 C -0.148 4.148 29 C -0.097 4.097 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.251 0.749 43 H 0.129 0.871 44 H 0.159 0.841 45 H 0.227 0.773 46 H 0.183 0.817 47 H 0.177 0.823 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.042 7.536 23.385 28.809 hybrid contribution 0.512 0.904 -1.196 1.584 sum -14.531 8.440 22.189 27.834 Atomic orbital electron populations 1.22162 0.97092 1.00806 1.00909 1.21005 0.93978 0.85622 0.98578 1.44003 1.76461 1.09622 1.02249 1.19205 1.03956 1.21026 0.94830 0.92612 1.25855 0.94094 1.03412 1.00154 1.70140 1.03834 1.38082 1.44237 0.85454 0.77845 0.79558 0.79088 1.18825 1.21959 1.21943 1.20703 0.95431 0.96042 0.85554 1.22141 1.00529 0.99499 0.93912 1.21045 0.87859 0.95244 0.94880 1.46028 1.14016 1.53489 1.23627 1.21492 0.91098 0.78038 0.80224 1.90691 1.32617 1.62130 1.60995 1.19988 0.95039 1.00544 0.93979 1.19794 1.10764 0.94093 0.94832 1.22192 0.98898 0.95764 0.86973 1.41698 1.54077 1.12629 1.09813 0.72417 1.18460 1.02667 0.90714 0.91697 1.20191 0.99561 0.89986 1.01210 1.21014 1.03263 1.01790 0.90022 1.17633 1.04100 0.87089 0.88411 1.91442 1.89606 1.61883 1.70497 1.20485 1.01590 0.92624 1.00144 1.19048 1.02766 0.95276 0.92608 0.92835 0.94540 0.91622 0.95363 0.93720 0.94137 0.92559 0.95488 0.90828 0.93090 0.94821 0.92416 0.74854 0.87118 0.84100 0.77336 0.81680 0.82314 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.17 16 2 C 0.13 5.43 6.44 86.38 0.56 5.98 16 3 N -0.60 -29.26 2.43 -701.99 -1.71 -30.97 16 4 C -0.26 -14.02 9.45 84.04 0.79 -13.22 16 5 H 0.06 3.00 7.92 -2.91 -0.02 2.98 16 6 C -0.04 -2.11 4.95 84.86 0.42 -1.69 16 7 N -0.92 -54.46 11.47 21.65 0.25 -54.21 16 8 Si 0.95 44.95 29.60 68.60 2.03 46.98 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 C 0.15 6.87 5.33 86.38 0.46 7.33 16 13 C -0.12 -4.35 5.65 30.60 0.17 -4.18 16 14 C 0.13 4.55 5.67 86.38 0.49 5.04 16 15 N -0.72 -18.59 5.56 -463.05 -2.57 -21.16 16 16 C 0.50 13.67 7.82 87.66 0.69 14.36 16 17 O -0.58 -21.94 16.03 -3.03 -0.05 -21.99 16 18 C -0.06 -0.95 6.23 29.10 0.18 -0.77 16 19 C -0.19 -3.80 4.81 -18.63 -0.09 -3.89 16 20 C 0.09 1.25 11.73 83.01 0.97 2.22 16 21 N -0.58 -7.43 6.07 -187.58 -1.14 -8.57 16 22 H 0.44 2.26 8.96 -92.70 -0.83 1.43 16 23 C 0.07 1.39 7.27 38.99 0.28 1.67 16 24 C -0.09 -1.42 10.06 22.35 0.22 -1.20 16 25 C -0.14 -2.69 9.99 22.34 0.22 -2.47 16 26 C 0.05 1.22 7.29 22.35 0.16 1.38 16 27 F -0.16 -4.31 17.26 44.97 0.78 -3.53 16 28 C -0.13 -3.46 10.07 22.51 0.23 -3.24 16 29 C -0.09 -2.25 6.35 -20.20 -0.13 -2.37 16 30 H 0.05 1.63 6.64 -2.39 -0.02 1.62 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 34 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 35 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 36 H 0.06 3.07 5.52 -2.38 -0.01 3.05 16 37 H 0.03 1.19 7.86 -2.39 -0.02 1.17 16 38 H 0.07 2.33 6.64 -2.39 -0.02 2.31 16 39 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.41 7.90 8.47 -92.71 -0.79 7.11 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 46 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 48 H 0.12 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -78.35 404.56 3.34 -75.01 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.62 Total: 17.66 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.37 Total: 0.78 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -5.17 Total: -114.92 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.78 Total: -3.53 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -78.35 3.34 -75.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752214543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.931 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds