Wall clock time and date at job start Wed Apr 1 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 N 1.46507 * 109.46706 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99641 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00003 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99694 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.47417 * 300.00380 * 8 6 5 10 10 C 1.53004 * 109.46759 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.46651 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47722 * 60.00116 * 11 10 8 13 13 C 1.53007 * 109.46763 * 300.00010 * 12 11 10 14 14 F 1.39901 * 109.46671 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47105 * 299.99596 * 13 12 11 16 16 C 1.52999 * 109.47239 * 59.99866 * 13 12 11 17 17 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 18 18 C 1.50696 * 109.47351 * 293.95574 * 17 2 1 19 19 O 1.21297 * 120.00140 * 0.02562 * 18 17 2 20 20 N 1.34775 * 120.00393 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00184 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00243 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99747 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47241 * 89.99996 * 25 23 21 27 27 H 1.48504 * 109.47008 * 210.00154 * 25 23 21 28 28 H 1.48502 * 109.46900 * 329.99794 * 25 23 21 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08994 * 109.47270 * 300.00135 * 4 3 2 35 35 H 1.08999 * 109.47017 * 60.00257 * 4 3 2 36 36 H 0.96990 * 120.00188 * 0.02562 * 5 4 3 37 37 H 1.08997 * 109.46862 * 299.99950 * 10 8 6 38 38 H 1.08999 * 109.47017 * 60.00353 * 10 8 6 39 39 H 1.09007 * 109.47191 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.47433 * 300.00131 * 11 10 8 41 41 H 1.08997 * 109.47461 * 59.99485 * 12 11 10 42 42 H 1.08997 * 109.47598 * 179.97438 * 12 11 10 43 43 H 1.08998 * 109.46983 * 180.02562 * 16 13 12 44 44 H 1.09002 * 109.47074 * 59.99661 * 16 13 12 45 45 H 1.08997 * 109.46995 * 53.95554 * 17 2 1 46 46 H 1.09001 * 109.46848 * 173.95560 * 17 2 1 47 47 H 0.96996 * 119.99654 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1572 3.4248 1.3186 6 6 1.9559 4.2239 2.3852 7 8 1.3401 3.8107 3.3448 8 6 2.4971 5.6304 2.3857 9 1 3.5814 5.6025 2.2784 10 6 2.1330 6.3163 3.7040 11 6 2.6819 7.7445 3.7042 12 6 2.0730 8.5252 2.5379 13 6 2.4371 7.8392 1.2196 14 9 1.8797 8.5528 0.1531 15 9 3.8287 7.8039 1.0811 16 6 1.8881 6.4110 1.2193 17 6 1.9954 -0.7660 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0046 -2.5832 -0.0035 20 7 2.0188 -3.1181 -1.9029 21 6 1.6930 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8892 23 6 2.0872 -5.3669 -2.7113 24 7 2.7719 -4.9738 -3.7618 25 14 1.6428 -7.1698 -2.5071 26 1 0.3310 -7.4323 -3.1519 27 1 2.6858 -8.0121 -3.1458 28 1 1.5582 -7.4981 -1.0613 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5013 2.1492 36 1 2.6494 3.7554 0.5510 37 1 1.0487 6.3442 3.8116 38 1 2.5666 5.7599 4.5349 39 1 2.4229 8.2331 4.6436 40 1 3.7663 7.7170 3.5963 41 1 0.9887 8.5527 2.6457 42 1 2.4637 9.5428 2.5384 43 1 2.1479 5.9222 0.2803 44 1 0.8038 6.4386 1.3272 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1757 47 1 2.5247 -2.8281 -2.6779 48 1 3.0474 -5.6200 -4.4307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753064473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:32 Heat of formation + Delta-G solvation = -182.986744 kcal Electronic energy + Delta-G solvation = -30273.516200 eV Core-core repulsion = 25612.504990 eV Total energy + Delta-G solvation = -4661.011210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.44857 -47.43213 -40.45338 -38.71825 -37.64308 -36.74973 -34.78011 -33.83034 -32.16444 -31.26219 -30.44557 -29.42682 -27.72039 -25.58512 -24.63117 -23.67052 -23.10569 -21.29362 -21.09637 -20.21005 -19.18937 -18.19467 -17.86363 -17.39947 -16.89345 -16.83742 -16.29048 -16.05251 -15.85174 -15.53690 -14.91891 -14.74298 -14.63523 -14.57237 -14.07819 -14.06787 -13.91086 -13.74553 -13.61377 -13.43137 -13.32450 -13.09607 -13.02384 -12.80011 -12.27888 -12.14041 -11.96612 -11.80950 -11.53573 -11.43345 -11.40828 -11.30182 -11.29829 -11.09138 -11.00481 -10.95311 -10.39552 -10.22910 -10.05414 -9.49152 -9.29072 -8.50941 -8.00540 -7.90604 -6.42834 -3.83581 2.27697 2.73541 3.17205 3.23497 3.26113 3.32196 3.49851 3.72970 3.78197 3.88580 4.02525 4.24630 4.26099 4.33324 4.40396 4.55178 4.66170 4.73722 4.80960 4.83678 4.95743 5.08940 5.09478 5.23338 5.24019 5.25775 5.31438 5.34957 5.46089 5.59880 5.63265 5.66300 5.79083 5.80291 5.84210 5.89758 5.97381 6.15199 6.25735 6.53967 7.13020 7.20560 7.29476 7.54443 7.91079 8.05219 8.60595 9.17184 9.53025 10.04879 10.74887 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001572 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.193507 B =17805.388744 C =18349.209554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.728 5.728 6 C 0.519 3.481 7 O -0.531 6.531 8 C -0.106 4.106 9 H 0.108 0.892 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.160 4.160 13 C 0.292 3.708 14 F -0.200 7.200 15 F -0.197 7.197 16 C -0.152 4.152 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.099 0.901 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 29.182 8.221 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.380 5.380 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.127 4.127 9 H 0.126 0.874 10 C -0.143 4.143 11 C -0.157 4.157 12 C -0.198 4.198 13 C 0.256 3.744 14 F -0.181 7.181 15 F -0.178 7.178 16 C -0.190 4.190 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.117 0.883 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.760 28.269 9.810 29.933 hybrid contribution 0.284 -0.109 -1.978 2.002 sum 1.044 28.160 7.832 29.247 Atomic orbital electron populations 1.22642 0.86467 1.04979 0.98927 1.61453 1.08956 1.10357 1.43134 1.22251 1.00799 0.89881 0.95593 1.21382 0.99635 0.80525 0.98771 1.45991 1.57847 1.14535 1.19626 1.20322 0.79874 0.86852 0.82507 1.90744 1.40320 1.75594 1.34002 1.21315 1.02606 0.92118 0.96669 0.87372 1.21454 1.02609 0.94544 0.95709 1.21552 1.01254 0.95134 0.97768 1.22568 1.04021 1.00828 0.92405 1.21005 0.74975 0.92554 0.85883 1.93031 1.85140 1.80343 1.59563 1.93008 1.31130 1.97248 1.96459 1.22519 1.03351 0.92890 1.00250 1.21877 1.00685 0.94263 0.91592 1.19697 0.85562 0.86583 0.85288 1.90491 1.43863 1.80095 1.31600 1.41858 1.49388 1.07369 1.21452 1.19703 1.32923 0.82245 1.07949 0.87879 1.25262 0.96788 1.00591 0.95312 1.69610 1.38026 1.35785 1.10929 0.85855 0.78002 0.81715 0.78705 1.20438 1.20933 1.19393 0.88271 0.96576 0.91925 0.90245 0.94576 0.91038 0.90112 0.76685 0.90446 0.89933 0.89865 0.90674 0.88548 0.89263 0.88886 0.87975 0.93334 0.89311 0.77508 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.01 60.07 0.54 0.82 16 2 N -0.51 -8.23 4.50 -244.37 -1.10 -9.33 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.36 5.61 -4.04 -0.02 1.33 16 5 N -0.73 -6.24 5.45 -60.29 -0.33 -6.57 16 6 C 0.52 5.02 7.15 -10.98 -0.08 4.94 16 7 O -0.53 -7.35 15.98 5.56 0.09 -7.26 16 8 C -0.11 -0.67 2.40 -91.77 -0.22 -0.89 16 9 H 0.11 0.60 7.80 -51.93 -0.41 0.19 16 10 C -0.11 -0.64 4.49 -26.73 -0.12 -0.76 16 11 C -0.12 -0.52 5.80 -26.73 -0.16 -0.67 16 12 C -0.16 -0.72 5.45 -26.73 -0.15 -0.87 16 13 C 0.29 1.84 2.10 -26.73 -0.06 1.79 16 14 F -0.20 -1.63 17.06 2.25 0.04 -1.59 16 15 F -0.20 -1.52 16.03 2.25 0.04 -1.49 16 16 C -0.15 -0.84 4.63 -26.73 -0.12 -0.96 16 17 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 18 C 0.44 10.30 7.51 -10.99 -0.08 10.21 16 19 O -0.58 -15.35 13.88 5.54 0.08 -15.28 16 20 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.88 6.30 -51.93 -0.33 0.56 16 32 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.06 16 34 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 2.33 7.89 -40.82 -0.32 2.00 16 37 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 40 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.44 7.56 -51.93 -0.39 0.05 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -33.45 392.21 -7.76 -41.20 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.37 Total: 7.97 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -0.75 Total: 8.29 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.76 Total: -53.69 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.17 Total: -22.53 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.45 -7.76 -41.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.782 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds