Wall clock time and date at job start Wed Apr 1 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.53004 * 109.46619 * 66.04574 * 3 2 1 5 5 N 1.46507 * 109.46706 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99641 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00003 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99694 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.47417 * 300.00380 * 8 6 5 10 10 C 1.53004 * 109.46759 * 180.02562 * 8 6 5 11 11 C 1.52998 * 109.46651 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47722 * 60.00116 * 11 10 8 13 13 C 1.53007 * 109.46763 * 300.00010 * 12 11 10 14 14 F 1.39901 * 109.46671 * 179.97438 * 13 12 11 15 15 F 1.39896 * 109.47105 * 299.99596 * 13 12 11 16 16 C 1.52999 * 109.47239 * 59.99866 * 13 12 11 17 17 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 18 18 C 1.50696 * 109.47351 * 293.95574 * 17 2 1 19 19 O 1.21297 * 120.00140 * 0.02562 * 18 17 2 20 20 N 1.34775 * 120.00393 * 180.02562 * 18 17 2 21 21 C 1.37096 * 120.00184 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00243 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99747 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00149 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47241 * 89.99996 * 25 23 21 27 27 H 1.48504 * 109.47008 * 210.00154 * 25 23 21 28 28 H 1.48502 * 109.46900 * 329.99794 * 25 23 21 29 29 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 30 30 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 31 31 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 32 32 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 33 33 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 34 34 H 1.08994 * 109.47270 * 300.00135 * 4 3 2 35 35 H 1.08999 * 109.47017 * 60.00257 * 4 3 2 36 36 H 0.96990 * 120.00188 * 0.02562 * 5 4 3 37 37 H 1.08997 * 109.46862 * 299.99950 * 10 8 6 38 38 H 1.08999 * 109.47017 * 60.00353 * 10 8 6 39 39 H 1.09007 * 109.47191 * 180.02562 * 11 10 8 40 40 H 1.09005 * 109.47433 * 300.00131 * 11 10 8 41 41 H 1.08997 * 109.47461 * 59.99485 * 12 11 10 42 42 H 1.08997 * 109.47598 * 179.97438 * 12 11 10 43 43 H 1.08998 * 109.46983 * 180.02562 * 16 13 12 44 44 H 1.09002 * 109.47074 * 59.99661 * 16 13 12 45 45 H 1.08997 * 109.46995 * 53.95554 * 17 2 1 46 46 H 1.09001 * 109.46848 * 173.95560 * 17 2 1 47 47 H 0.96996 * 119.99654 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99951 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 7 2.1572 3.4248 1.3186 6 6 1.9559 4.2239 2.3852 7 8 1.3401 3.8107 3.3448 8 6 2.4971 5.6304 2.3857 9 1 3.5814 5.6025 2.2784 10 6 2.1330 6.3163 3.7040 11 6 2.6819 7.7445 3.7042 12 6 2.0730 8.5252 2.5379 13 6 2.4371 7.8392 1.2196 14 9 1.8797 8.5528 0.1531 15 9 3.8287 7.8039 1.0811 16 6 1.8881 6.4110 1.2193 17 6 1.9954 -0.7660 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0046 -2.5832 -0.0035 20 7 2.0188 -3.1181 -1.9029 21 6 1.6930 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8892 23 6 2.0872 -5.3669 -2.7113 24 7 2.7719 -4.9738 -3.7618 25 14 1.6428 -7.1698 -2.5071 26 1 0.3310 -7.4323 -3.1519 27 1 2.6858 -8.0121 -3.1458 28 1 1.5582 -7.4981 -1.0613 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.4513 -0.9233 31 1 -0.3633 0.5740 0.8525 32 1 3.0798 1.3443 -0.1082 33 1 1.5612 1.9273 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5013 2.1492 36 1 2.6494 3.7554 0.5510 37 1 1.0487 6.3442 3.8116 38 1 2.5666 5.7599 4.5349 39 1 2.4229 8.2331 4.6436 40 1 3.7663 7.7170 3.5963 41 1 0.9887 8.5527 2.6457 42 1 2.4637 9.5428 2.5384 43 1 2.1479 5.9222 0.2803 44 1 0.8038 6.4386 1.3272 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1757 47 1 2.5247 -2.8281 -2.6779 48 1 3.0474 -5.6200 -4.4307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753064473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:31 Heat of formation + Delta-G solvation = -207.495026 kcal Electronic energy + Delta-G solvation = -30274.578959 eV Core-core repulsion = 25612.504990 eV Total energy + Delta-G solvation = -4662.073969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.97689 -47.97520 -41.21204 -40.36285 -38.45029 -37.86002 -36.02893 -35.53875 -33.27378 -32.69043 -30.90965 -30.48424 -29.06118 -27.06377 -25.81442 -24.56451 -23.67227 -22.33440 -21.74287 -20.98708 -20.79489 -19.85045 -18.80771 -17.95231 -17.81986 -17.46893 -17.37631 -17.13591 -16.80931 -16.54874 -16.34111 -15.98142 -15.85695 -15.39066 -15.17613 -15.13123 -15.01543 -14.63415 -14.45366 -14.33884 -14.28884 -13.85265 -13.76638 -13.59894 -13.44495 -13.27501 -13.03999 -12.93835 -12.77015 -12.58163 -12.55541 -12.40051 -12.29407 -12.15359 -12.08789 -11.85511 -11.75571 -11.48090 -11.45503 -10.82273 -10.28760 -10.14112 -9.98831 -9.24056 -8.45734 -5.93923 1.38159 1.42072 1.52131 1.54504 1.94661 2.07218 2.30459 2.73684 2.90102 3.09166 3.21362 3.25867 3.35307 3.43451 3.76408 3.79630 3.89129 3.92898 4.05746 4.15809 4.21139 4.25409 4.32987 4.36937 4.42445 4.45817 4.52998 4.63143 4.64584 4.69994 4.81046 4.84681 4.90294 4.92610 4.95699 5.12265 5.17977 5.21877 5.31866 5.38832 5.42351 5.85111 6.04904 6.16855 6.48115 6.62457 7.14742 7.18529 7.58382 8.14837 8.71574 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.001572 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.193507 B =17805.388744 C =18349.209554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.051 3.949 4 C 0.129 3.871 5 N -0.714 5.714 6 C 0.518 3.482 7 O -0.577 6.577 8 C -0.095 4.095 9 H 0.122 0.878 10 C -0.105 4.105 11 C -0.112 4.112 12 C -0.159 4.159 13 C 0.288 3.712 14 F -0.211 7.211 15 F -0.206 7.206 16 C -0.149 4.149 17 C 0.060 3.940 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.073 0.927 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 30.921 7.332 31.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.077 4.077 4 C 0.004 3.996 5 N -0.367 5.367 6 C 0.305 3.695 7 O -0.456 6.456 8 C -0.116 4.116 9 H 0.139 0.861 10 C -0.143 4.143 11 C -0.150 4.150 12 C -0.197 4.197 13 C 0.252 3.748 14 F -0.192 7.192 15 F -0.187 7.187 16 C -0.187 4.187 17 C -0.071 4.071 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.598 30.051 8.877 31.375 hybrid contribution 0.024 -0.593 -1.657 1.760 sum 1.623 29.458 7.220 30.373 Atomic orbital electron populations 1.22477 0.86872 1.02579 1.00455 1.61337 1.08911 1.13157 1.43003 1.22257 1.01829 0.87421 0.96155 1.21110 0.98813 0.81613 0.98019 1.45833 1.57421 1.13357 1.20111 1.20893 0.78921 0.87904 0.81763 1.90730 1.42454 1.76667 1.35740 1.21266 1.03139 0.89924 0.97319 0.86057 1.21444 1.02167 0.95565 0.95145 1.21507 1.01143 0.93878 0.98422 1.22601 1.04739 1.01012 0.91308 1.21236 0.74448 0.92938 0.86207 1.93008 1.85293 1.80629 1.60273 1.92992 1.31870 1.97302 1.96525 1.22504 1.03483 0.92476 1.00219 1.21745 1.02340 0.89928 0.93059 1.20834 0.83721 0.88912 0.83852 1.90475 1.45171 1.81497 1.33056 1.41922 1.50069 1.06988 1.22224 1.19640 1.34361 0.84130 1.08025 0.90442 1.26001 0.96300 1.04201 0.94735 1.69664 1.38101 1.37127 1.11202 0.84953 0.78232 0.76996 0.78303 1.19680 1.19542 1.19954 0.92556 0.94795 0.90622 0.88403 0.92059 0.92212 0.92610 0.74681 0.91195 0.91103 0.88510 0.90573 0.87575 0.88499 0.87767 0.87615 0.90946 0.86751 0.76960 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.01 127.69 1.15 1.90 16 2 N -0.54 -16.47 4.50 -927.04 -4.17 -20.64 16 3 C 0.05 1.02 5.07 86.30 0.44 1.46 16 4 C 0.13 2.74 5.61 86.38 0.48 3.22 16 5 N -0.71 -10.87 5.45 -463.04 -2.52 -13.40 16 6 C 0.52 9.47 7.15 87.66 0.63 10.09 16 7 O -0.58 -16.04 15.98 -3.04 -0.05 -16.09 16 8 C -0.10 -1.06 2.40 -11.54 -0.03 -1.08 16 9 H 0.12 1.07 7.80 -2.39 -0.02 1.05 16 10 C -0.11 -1.17 4.49 30.60 0.14 -1.03 16 11 C -0.11 -0.76 5.80 30.59 0.18 -0.58 16 12 C -0.16 -1.10 5.45 30.60 0.17 -0.94 16 13 C 0.29 3.05 2.10 30.60 0.06 3.12 16 14 F -0.21 -3.08 17.06 44.97 0.77 -2.31 16 15 F -0.21 -2.75 16.03 44.97 0.72 -2.03 16 16 C -0.15 -1.32 4.63 30.59 0.14 -1.18 16 17 C 0.06 1.97 5.45 85.55 0.47 2.43 16 18 C 0.44 20.59 7.51 87.66 0.66 21.25 16 19 O -0.62 -33.90 13.88 -3.08 -0.04 -33.94 16 20 N -0.57 -29.12 5.29 -306.99 -1.62 -30.74 16 21 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 25 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.06 2.26 5.88 -2.39 -0.01 2.25 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 2.11 6.30 -2.38 -0.02 2.10 16 32 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 33 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 34 H 0.06 1.42 6.47 -2.39 -0.02 1.41 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 3.56 7.89 -92.72 -0.73 2.83 16 37 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 39 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.08 0.53 7.80 -2.38 -0.02 0.51 16 41 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.10 0.69 7.56 -2.39 -0.02 0.67 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 46 H 0.11 3.17 7.93 -2.39 -0.02 3.15 16 47 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 48 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -74.64 392.21 0.69 -73.95 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.47 Total: 28.69 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 5.76 Total: 20.48 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -8.03 Total: -113.74 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.09 Total: -50.03 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.49 Total: -4.34 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -74.64 0.69 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.542 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds