Wall clock time and date at job start Wed Apr 1 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00146 * 2 1 4 4 C 1.53005 * 109.46647 * 293.95461 * 3 2 1 5 5 N 1.46505 * 109.46784 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00115 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99593 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47233 * 299.99657 * 11 10 8 13 13 C 1.52997 * 109.46817 * 60.00194 * 12 11 10 14 14 F 1.39895 * 109.47162 * 60.00252 * 13 12 11 15 15 F 1.39900 * 109.47367 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.46961 * 300.00358 * 8 6 5 17 17 C 1.46900 * 111.00122 * 123.95217 * 2 1 3 18 18 C 1.50698 * 109.46911 * 66.04770 * 17 2 1 19 19 O 1.21287 * 119.99960 * 359.97438 * 18 17 2 20 20 N 1.34781 * 119.99738 * 180.02562 * 18 17 2 21 21 C 1.37097 * 119.99720 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00315 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99710 * 179.97438 * 21 20 18 24 24 N 1.31403 * 119.99963 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47300 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47201 * 120.00011 * 25 23 21 28 28 H 1.48504 * 109.47094 * 239.99887 * 25 23 21 29 29 H 1.09003 * 109.46814 * 60.00425 * 1 2 3 30 30 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47430 * 300.00160 * 1 2 3 32 32 H 1.08992 * 109.47412 * 173.95164 * 3 2 1 33 33 H 1.09001 * 109.47165 * 53.95001 * 3 2 1 34 34 H 1.09002 * 109.47193 * 60.00221 * 4 3 2 35 35 H 1.08992 * 109.47333 * 299.99219 * 4 3 2 36 36 H 0.97003 * 120.00244 * 359.97438 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 39 39 H 1.08992 * 109.47399 * 59.99823 * 11 10 8 40 40 H 1.09004 * 109.46724 * 180.02562 * 11 10 8 41 41 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 43 43 H 1.09000 * 109.47486 * 59.99568 * 16 8 6 44 44 H 1.09002 * 109.46716 * 299.99650 * 16 8 6 45 45 H 1.09000 * 109.47344 * 186.04550 * 17 2 1 46 46 H 1.08995 * 109.46817 * 306.04746 * 17 2 1 47 47 H 0.97001 * 120.00101 * 359.97438 * 20 18 17 48 48 H 0.97004 * 120.00099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1559 3.4253 -1.3181 6 6 1.9554 4.2241 -2.3850 7 8 1.3402 3.8106 -3.3450 8 6 2.4954 5.6310 -2.3850 9 1 3.5796 5.6040 -2.2764 10 6 2.1313 6.3171 -3.7032 11 6 2.6801 7.7452 -3.7034 12 6 2.0710 8.5259 -2.5370 13 6 2.4351 7.8399 -1.2189 14 9 3.8267 7.8047 -1.0803 15 9 1.8777 8.5533 -0.1523 16 6 1.8853 6.4115 -1.2190 17 6 1.9954 -0.7659 1.1376 18 6 1.6370 -2.2204 0.9728 19 8 1.0047 -2.5831 0.0034 20 7 2.0181 -3.1179 1.9033 21 6 1.6924 -4.4411 1.7532 22 1 1.1301 -4.7643 0.8895 23 6 2.0858 -5.3665 2.7122 24 7 2.7703 -4.9735 3.7626 25 14 1.6414 -7.1694 2.5079 26 1 0.8732 -7.3505 1.2501 27 1 2.8831 -7.9820 2.4515 28 1 0.8141 -7.6089 3.6602 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0796 1.3444 0.1083 33 1 1.5611 1.9274 0.8309 34 1 0.5471 2.0844 -1.4265 35 1 2.0658 1.5016 -2.1492 36 1 2.6476 3.7562 -0.5501 37 1 1.0470 6.3441 -3.8114 38 1 2.5656 5.7611 -4.5341 39 1 3.7643 7.7179 -3.5955 40 1 2.4203 8.2341 -4.6424 41 1 2.4616 9.5435 -2.5374 42 1 0.9867 8.5532 -2.6450 43 1 2.1443 5.9229 -0.2797 44 1 0.8011 6.4384 -1.3276 45 1 3.0797 -0.6611 1.1756 46 1 1.5611 -0.3872 2.0627 47 1 2.5234 -2.8277 2.6788 48 1 3.0453 -5.6195 4.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753064474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:40 Heat of formation + Delta-G solvation = -183.194826 kcal Electronic energy + Delta-G solvation = -30273.426293 eV Core-core repulsion = 25612.406059 eV Total energy + Delta-G solvation = -4661.020234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.44804 -47.43213 -40.45203 -38.72395 -37.64267 -36.74838 -34.78029 -33.83395 -32.16408 -31.26456 -30.44291 -29.42590 -27.72229 -25.58353 -24.63156 -23.67025 -23.10493 -21.29840 -21.09651 -20.20994 -19.18942 -18.19483 -17.86468 -17.39948 -16.89271 -16.83560 -16.28805 -16.05495 -15.85132 -15.53842 -14.91746 -14.74442 -14.63433 -14.57271 -14.08008 -14.06757 -13.91017 -13.74584 -13.61103 -13.43630 -13.32442 -13.09562 -13.02218 -12.80029 -12.27712 -12.15532 -11.96374 -11.80921 -11.53832 -11.43372 -11.40761 -11.30491 -11.29999 -11.09588 -11.00616 -10.96662 -10.34838 -10.23771 -10.05352 -9.50240 -9.29218 -8.50453 -8.00891 -7.91405 -6.43152 -3.83832 2.27709 2.73572 3.15572 3.23436 3.26433 3.33729 3.49809 3.73007 3.78279 3.88331 4.02431 4.24535 4.26146 4.33386 4.40423 4.55259 4.66151 4.73760 4.80967 4.83690 4.95693 5.09071 5.09577 5.23117 5.24046 5.25769 5.31490 5.35158 5.46086 5.60208 5.63282 5.65842 5.79084 5.79471 5.85343 5.89878 5.97235 6.15318 6.25563 6.52833 7.12996 7.20579 7.29287 7.54418 7.91120 8.05222 8.60285 9.17032 9.52837 10.04557 10.74653 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.001572 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.084804 B =17805.881815 C =18349.957719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.728 5.728 6 C 0.519 3.481 7 O -0.531 6.531 8 C -0.106 4.106 9 H 0.108 0.892 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.160 4.160 13 C 0.292 3.708 14 F -0.197 7.197 15 F -0.200 7.200 16 C -0.152 4.152 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.373 29.185 -8.220 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.380 5.380 6 C 0.304 3.696 7 O -0.407 6.407 8 C -0.127 4.127 9 H 0.126 0.874 10 C -0.143 4.143 11 C -0.157 4.157 12 C -0.198 4.198 13 C 0.256 3.744 14 F -0.178 7.178 15 F -0.181 7.181 16 C -0.190 4.190 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.733 28.274 -9.813 29.937 hybrid contribution 0.301 -0.110 1.979 2.005 sum 1.034 28.163 -7.833 29.251 Atomic orbital electron populations 1.22628 0.86463 1.04792 0.99085 1.61444 1.08958 1.10377 1.43125 1.22258 1.00796 0.89846 0.95604 1.21374 0.99645 0.80508 0.98763 1.45994 1.57909 1.14516 1.19582 1.20321 0.79864 0.86859 0.82511 1.90746 1.40332 1.75598 1.33991 1.21314 1.02607 0.92114 0.96675 0.87374 1.21454 1.02609 0.94545 0.95708 1.21552 1.01250 0.95132 0.97767 1.22570 1.04021 1.00829 0.92410 1.21014 0.74973 0.92558 0.85880 1.93008 1.31126 1.97247 1.96459 1.93030 1.85138 1.80354 1.59555 1.22528 1.03343 0.92885 1.00247 1.21871 1.00688 0.94259 0.91621 1.19698 0.85554 0.86588 0.85280 1.90493 1.43829 1.80090 1.31601 1.41871 1.49443 1.07387 1.21404 1.19756 1.32870 0.82235 1.07908 0.87818 1.25263 0.96817 1.00597 0.95302 1.69616 1.38107 1.35679 1.10940 0.85800 0.78214 0.81900 0.78431 1.19201 1.20746 1.20792 0.91874 0.88338 0.96620 0.90249 0.94565 0.91059 0.90111 0.76686 0.90438 0.89940 0.90668 0.89866 0.89266 0.88547 0.88894 0.87971 0.89306 0.93335 0.77507 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.82 16 2 N -0.51 -8.23 4.50 -244.38 -1.10 -9.33 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.36 5.60 -4.04 -0.02 1.34 16 5 N -0.73 -6.25 5.45 -60.29 -0.33 -6.58 16 6 C 0.52 5.02 7.15 -10.99 -0.08 4.94 16 7 O -0.53 -7.35 15.98 5.55 0.09 -7.26 16 8 C -0.11 -0.67 2.40 -91.78 -0.22 -0.89 16 9 H 0.11 0.60 7.80 -51.93 -0.41 0.19 16 10 C -0.11 -0.64 4.49 -26.73 -0.12 -0.76 16 11 C -0.12 -0.52 5.80 -26.73 -0.16 -0.67 16 12 C -0.16 -0.72 5.45 -26.73 -0.15 -0.87 16 13 C 0.29 1.84 2.10 -26.70 -0.06 1.79 16 14 F -0.20 -1.52 16.02 2.25 0.04 -1.49 16 15 F -0.20 -1.63 17.06 2.25 0.04 -1.59 16 16 C -0.15 -0.84 4.63 -26.70 -0.12 -0.96 16 17 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 18 C 0.44 10.29 7.48 -10.98 -0.08 10.21 16 19 O -0.58 -15.34 13.91 5.55 0.08 -15.26 16 20 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 21 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.90 6.47 -51.93 -0.34 0.56 16 30 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 2.33 7.89 -40.82 -0.32 2.00 16 37 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.44 7.56 -51.93 -0.39 0.05 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 46 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -33.47 392.33 -7.77 -41.24 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.38 Total: 7.93 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.75 Total: 8.30 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.76 Total: -53.69 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.47 -7.77 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.959 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds