Wall clock time and date at job start Wed Apr 1 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00146 * 2 1 4 4 C 1.53005 * 109.46647 * 293.95461 * 3 2 1 5 5 N 1.46505 * 109.46784 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00115 * 179.97438 * 5 4 3 7 7 O 1.21288 * 119.99593 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 10 10 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47233 * 299.99657 * 11 10 8 13 13 C 1.52997 * 109.46817 * 60.00194 * 12 11 10 14 14 F 1.39895 * 109.47162 * 60.00252 * 13 12 11 15 15 F 1.39900 * 109.47367 * 180.02562 * 13 12 11 16 16 C 1.52999 * 109.46961 * 300.00358 * 8 6 5 17 17 C 1.46900 * 111.00122 * 123.95217 * 2 1 3 18 18 C 1.50698 * 109.46911 * 66.04770 * 17 2 1 19 19 O 1.21287 * 119.99960 * 359.97438 * 18 17 2 20 20 N 1.34781 * 119.99738 * 180.02562 * 18 17 2 21 21 C 1.37097 * 119.99720 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00315 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99710 * 179.97438 * 21 20 18 24 24 N 1.31403 * 119.99963 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47300 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47201 * 120.00011 * 25 23 21 28 28 H 1.48504 * 109.47094 * 239.99887 * 25 23 21 29 29 H 1.09003 * 109.46814 * 60.00425 * 1 2 3 30 30 H 1.08998 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47430 * 300.00160 * 1 2 3 32 32 H 1.08992 * 109.47412 * 173.95164 * 3 2 1 33 33 H 1.09001 * 109.47165 * 53.95001 * 3 2 1 34 34 H 1.09002 * 109.47193 * 60.00221 * 4 3 2 35 35 H 1.08992 * 109.47333 * 299.99219 * 4 3 2 36 36 H 0.97003 * 120.00244 * 359.97438 * 5 4 3 37 37 H 1.09002 * 109.47153 * 59.99773 * 10 8 6 38 38 H 1.09001 * 109.46832 * 299.99964 * 10 8 6 39 39 H 1.08992 * 109.47399 * 59.99823 * 11 10 8 40 40 H 1.09004 * 109.46724 * 180.02562 * 11 10 8 41 41 H 1.08993 * 109.47662 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47075 * 300.00932 * 12 11 10 43 43 H 1.09000 * 109.47486 * 59.99568 * 16 8 6 44 44 H 1.09002 * 109.46716 * 299.99650 * 16 8 6 45 45 H 1.09000 * 109.47344 * 186.04550 * 17 2 1 46 46 H 1.08995 * 109.46817 * 306.04746 * 17 2 1 47 47 H 0.97001 * 120.00101 * 359.97438 * 20 18 17 48 48 H 0.97004 * 120.00099 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1559 3.4253 -1.3181 6 6 1.9554 4.2241 -2.3850 7 8 1.3402 3.8106 -3.3450 8 6 2.4954 5.6310 -2.3850 9 1 3.5796 5.6040 -2.2764 10 6 2.1313 6.3171 -3.7032 11 6 2.6801 7.7452 -3.7034 12 6 2.0710 8.5259 -2.5370 13 6 2.4351 7.8399 -1.2189 14 9 3.8267 7.8047 -1.0803 15 9 1.8777 8.5533 -0.1523 16 6 1.8853 6.4115 -1.2190 17 6 1.9954 -0.7659 1.1376 18 6 1.6370 -2.2204 0.9728 19 8 1.0047 -2.5831 0.0034 20 7 2.0181 -3.1179 1.9033 21 6 1.6924 -4.4411 1.7532 22 1 1.1301 -4.7643 0.8895 23 6 2.0858 -5.3665 2.7122 24 7 2.7703 -4.9735 3.7626 25 14 1.6414 -7.1694 2.5079 26 1 0.8732 -7.3505 1.2501 27 1 2.8831 -7.9820 2.4515 28 1 0.8141 -7.6089 3.6602 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.0796 1.3444 0.1083 33 1 1.5611 1.9274 0.8309 34 1 0.5471 2.0844 -1.4265 35 1 2.0658 1.5016 -2.1492 36 1 2.6476 3.7562 -0.5501 37 1 1.0470 6.3441 -3.8114 38 1 2.5656 5.7611 -4.5341 39 1 3.7643 7.7179 -3.5955 40 1 2.4203 8.2341 -4.6424 41 1 2.4616 9.5435 -2.5374 42 1 0.9867 8.5532 -2.6450 43 1 2.1443 5.9229 -0.2797 44 1 0.8011 6.4384 -1.3276 45 1 3.0797 -0.6611 1.1756 46 1 1.5611 -0.3872 2.0627 47 1 2.5234 -2.8277 2.6788 48 1 3.0453 -5.6195 4.4320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753064474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:35 Heat of formation + Delta-G solvation = -207.725846 kcal Electronic energy + Delta-G solvation = -30274.490038 eV Core-core repulsion = 25612.406059 eV Total energy + Delta-G solvation = -4662.083978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -49.97647 -47.97530 -41.21109 -40.36867 -38.44826 -37.85916 -36.03145 -35.53958 -33.27577 -32.69026 -30.90702 -30.48287 -29.06320 -27.06344 -25.81459 -24.56257 -23.67219 -22.33995 -21.74238 -20.98647 -20.79494 -19.85151 -18.80814 -17.95258 -17.82087 -17.46757 -17.37594 -17.13495 -16.80816 -16.55201 -16.34146 -15.98462 -15.85391 -15.38846 -15.17684 -15.13328 -15.01462 -14.63534 -14.45206 -14.33288 -14.28639 -13.85260 -13.77941 -13.59810 -13.45476 -13.27547 -13.04565 -12.93918 -12.76908 -12.58154 -12.55429 -12.39381 -12.29389 -12.14998 -12.08902 -11.85451 -11.75582 -11.48131 -11.46034 -10.82240 -10.28658 -10.14271 -9.98792 -9.24404 -8.46049 -5.94145 1.36686 1.42121 1.52105 1.55933 1.94665 2.07029 2.30358 2.73572 2.90099 3.09135 3.21145 3.25871 3.35385 3.43373 3.76476 3.79790 3.89170 3.92858 4.05926 4.15886 4.21108 4.25436 4.32996 4.36428 4.42422 4.46501 4.53115 4.63497 4.63961 4.69976 4.81080 4.85041 4.90241 4.92610 4.95714 5.12275 5.17962 5.21101 5.31860 5.38840 5.42444 5.85086 6.04942 6.16761 6.48089 6.62239 7.14676 7.18531 7.58264 8.14636 8.71516 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.001572 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.084804 B =17805.881815 C =18349.957719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.539 5.539 3 C 0.051 3.949 4 C 0.129 3.871 5 N -0.714 5.714 6 C 0.518 3.482 7 O -0.577 6.577 8 C -0.095 4.095 9 H 0.122 0.878 10 C -0.105 4.105 11 C -0.112 4.112 12 C -0.159 4.159 13 C 0.288 3.712 14 F -0.206 7.206 15 F -0.211 7.211 16 C -0.148 4.148 17 C 0.060 3.940 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 30.920 -7.321 31.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.367 5.367 6 C 0.305 3.695 7 O -0.456 6.456 8 C -0.117 4.117 9 H 0.139 0.861 10 C -0.143 4.143 11 C -0.149 4.149 12 C -0.197 4.197 13 C 0.252 3.748 14 F -0.187 7.187 15 F -0.192 7.192 16 C -0.187 4.187 17 C -0.071 4.071 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.598 30.050 -8.868 31.372 hybrid contribution 0.033 -0.594 1.656 1.760 sum 1.631 29.456 -7.212 30.370 Atomic orbital electron populations 1.22462 0.86872 1.02388 1.00603 1.61333 1.08911 1.13173 1.43000 1.22264 1.01832 0.87393 0.96159 1.21101 0.98813 0.81599 0.98019 1.45836 1.57482 1.13338 1.20068 1.20893 0.78910 0.87913 0.81767 1.90731 1.42468 1.76671 1.35731 1.21265 1.03143 0.89917 0.97326 0.86057 1.21443 1.02166 0.95568 0.95143 1.21507 1.01141 0.93874 0.98421 1.22603 1.04739 1.01014 0.91313 1.21244 0.74447 0.92942 0.86204 1.92991 1.31864 1.97301 1.96525 1.93008 1.85291 1.80640 1.60266 1.22514 1.03472 0.92471 1.00217 1.21738 1.02341 0.89917 0.93086 1.20833 0.83703 0.88916 0.83841 1.90476 1.45145 1.81494 1.33067 1.41932 1.50127 1.07000 1.22178 1.19678 1.34307 0.84127 1.07971 0.90448 1.26000 0.96326 1.04201 0.94724 1.69668 1.38182 1.37048 1.11222 0.84894 0.78233 0.77143 0.78203 1.19954 1.19645 1.19623 0.90796 0.92593 0.94646 0.88401 0.92047 0.92252 0.92610 0.74680 0.91189 0.91112 0.90565 0.88511 0.88501 0.87575 0.87775 0.87612 0.86743 0.90940 0.76955 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 8.96 127.69 1.14 1.92 16 2 N -0.54 -16.47 4.50 -927.07 -4.17 -20.64 16 3 C 0.05 1.03 5.07 86.30 0.44 1.47 16 4 C 0.13 2.75 5.60 86.38 0.48 3.23 16 5 N -0.71 -10.89 5.45 -463.05 -2.52 -13.41 16 6 C 0.52 9.48 7.15 87.66 0.63 10.10 16 7 O -0.58 -16.06 15.98 -3.05 -0.05 -16.11 16 8 C -0.10 -1.06 2.40 -11.54 -0.03 -1.09 16 9 H 0.12 1.07 7.80 -2.39 -0.02 1.05 16 10 C -0.11 -1.17 4.49 30.59 0.14 -1.03 16 11 C -0.11 -0.76 5.80 30.60 0.18 -0.58 16 12 C -0.16 -1.11 5.45 30.59 0.17 -0.94 16 13 C 0.29 3.05 2.10 30.61 0.06 3.12 16 14 F -0.21 -2.75 16.02 44.97 0.72 -2.03 16 15 F -0.21 -3.08 17.06 44.97 0.77 -2.31 16 16 C -0.15 -1.32 4.63 30.61 0.14 -1.18 16 17 C 0.06 1.96 5.45 85.56 0.47 2.43 16 18 C 0.44 20.59 7.48 87.66 0.66 21.25 16 19 O -0.62 -33.89 13.91 -3.05 -0.04 -33.93 16 20 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 21 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.25 13.05 21.66 0.28 -48.97 16 25 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H 0.07 2.10 6.47 -2.39 -0.02 2.08 16 30 H 0.06 2.24 5.82 -2.39 -0.01 2.23 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 33 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 34 H 0.06 1.42 6.55 -2.39 -0.02 1.40 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 3.56 7.89 -92.71 -0.73 2.83 16 37 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 39 H 0.08 0.53 7.80 -2.39 -0.02 0.51 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 0.69 7.56 -2.39 -0.02 0.67 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 3.17 7.93 -2.39 -0.02 3.15 16 46 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 47 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -74.71 392.33 0.68 -74.03 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.47 Total: 28.58 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.76 Total: 20.53 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -8.03 Total: -113.76 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.09 Total: -50.04 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.49 Total: -4.34 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.71 0.68 -74.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753064474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.693 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds