Wall clock time and date at job start Wed Apr 1 2020 06:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 N 1.46904 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.46902 * 111.00017 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47123 * 179.97438 * 6 5 4 8 8 O 1.21292 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99767 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00112 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47521 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47076 * 120.00445 * 14 12 10 17 17 H 1.48509 * 109.47080 * 240.00143 * 14 12 10 18 18 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00031 * 180.02562 * 18 2 1 20 20 C 1.50699 * 119.99563 * 0.02562 * 18 2 1 21 21 C 1.53001 * 109.47045 * 179.97438 * 20 18 2 22 22 H 1.09003 * 110.01788 * 54.29776 * 21 20 18 23 23 C 1.54267 * 110.03521 * 175.68836 * 21 20 18 24 24 C 1.54889 * 104.19677 * 142.89387 * 23 21 20 25 25 C 1.54897 * 102.74741 * 322.05915 * 24 23 21 26 26 C 1.53880 * 110.02968 * 292.90721 * 21 20 18 27 27 F 1.39899 * 110.03160 * 359.97438 * 26 21 20 28 28 F 1.39900 * 110.02967 * 121.42989 * 26 21 20 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 1.09007 * 109.46869 * 300.00135 * 4 3 2 35 35 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 36 36 H 1.00903 * 110.99882 * 56.04460 * 5 4 3 37 37 H 1.08995 * 109.47122 * 300.00372 * 6 5 4 38 38 H 1.09009 * 109.46353 * 60.00310 * 6 5 4 39 39 H 0.96996 * 120.00491 * 359.97438 * 9 7 6 40 40 H 0.96998 * 120.00209 * 179.97438 * 13 12 10 41 41 H 1.09004 * 109.47017 * 299.99442 * 20 18 2 42 42 H 1.09002 * 109.47507 * 59.99434 * 20 18 2 43 43 H 1.08992 * 110.48569 * 261.57435 * 23 21 20 44 44 H 1.09005 * 110.48572 * 24.21545 * 23 21 20 45 45 H 1.08992 * 110.75703 * 80.36994 * 24 23 21 46 46 H 1.08996 * 110.75640 * 203.74859 * 24 23 21 47 47 H 1.08998 * 110.48288 * 156.62137 * 25 24 23 48 48 H 1.08999 * 110.48719 * 279.12849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 7 3.1865 2.9829 1.4426 6 6 3.4491 3.4392 2.8140 7 6 4.2024 4.7438 2.7738 8 8 4.4916 5.2445 1.7076 9 7 4.5548 5.3541 3.9226 10 6 5.2396 6.5412 3.8861 11 1 5.4971 6.9871 2.9367 12 6 5.6024 7.1707 5.0704 13 7 5.2895 6.6280 6.2256 14 14 6.5362 8.7878 5.0206 15 1 6.7650 9.1840 3.6078 16 1 5.7426 9.8390 5.7066 17 1 7.8427 8.6264 5.7078 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4723 0.0005 21 6 2.3796 -3.6352 0.0005 22 1 3.0764 -3.5305 0.8322 23 6 1.6246 -4.9761 0.1095 24 6 2.4289 -5.9398 -0.7979 25 6 2.8345 -5.0322 -1.9858 26 6 3.1498 -3.6702 -1.3312 27 9 2.7200 -2.6289 -2.1608 28 9 4.5239 -3.5585 -1.0931 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 1.5000 1.8408 1.9563 35 1 3.0416 0.9508 1.9565 36 1 2.6903 3.6866 0.9165 37 1 2.5035 3.5811 3.3370 38 1 4.0454 2.6917 3.3376 39 1 4.3232 4.9539 4.7753 40 1 5.5431 7.0673 7.0524 41 1 0.7585 -2.5298 0.8904 42 1 0.7590 -2.5302 -0.8896 43 1 1.6258 -5.3319 1.1397 44 1 0.6036 -4.8698 -0.2572 45 1 3.3113 -6.3133 -0.2784 46 1 1.8018 -6.7638 -1.1380 47 1 3.7187 -5.4291 -2.4845 48 1 2.0098 -4.9370 -2.6920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753228179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:44 Heat of formation + Delta-G solvation = -175.836810 kcal Electronic energy + Delta-G solvation = -30705.153484 eV Core-core repulsion = 26044.452318 eV Total energy + Delta-G solvation = -4660.701166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.99351 -47.04497 -40.18871 -38.27975 -37.86919 -36.30808 -34.94315 -33.79138 -32.37078 -31.20122 -29.83682 -28.31140 -27.08847 -26.75887 -25.32480 -23.79127 -22.18685 -21.75730 -20.69259 -19.41558 -19.06091 -17.94420 -17.85354 -17.40215 -16.98781 -16.48016 -16.19987 -16.15330 -15.49314 -15.47796 -14.84114 -14.56997 -14.42123 -14.33334 -14.03892 -13.85291 -13.66387 -13.51116 -13.34904 -13.25051 -13.18850 -13.12016 -12.64945 -12.61921 -12.27294 -12.11727 -11.95912 -11.90602 -11.75354 -11.72569 -11.48351 -11.46861 -11.24427 -11.08523 -10.92719 -10.79423 -10.31588 -10.19523 -9.92798 -9.48899 -8.90350 -8.41130 -8.02772 -7.92548 -6.38682 -3.79327 2.49390 2.72009 3.18912 3.29189 3.36988 3.45557 3.57442 3.80842 3.92362 3.94612 4.16129 4.28087 4.44815 4.50392 4.56798 4.70051 4.72815 4.84987 4.89379 4.93660 5.01225 5.04813 5.08500 5.19507 5.21469 5.23833 5.27815 5.30618 5.34511 5.38235 5.44390 5.48772 5.61864 5.73678 5.78985 5.89837 6.00875 6.05065 6.27684 6.35678 7.15746 7.23083 7.58575 7.69392 8.03259 8.09935 8.64719 9.21180 9.57735 10.09313 10.79254 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001695 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.957143 B =16516.351684 C =16816.083421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.118 3.882 4 C 0.049 3.951 5 N -0.665 5.665 6 C 0.053 3.947 7 C 0.442 3.558 8 O -0.582 6.582 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.511 3.489 19 O -0.521 6.521 20 C -0.133 4.133 21 C -0.120 4.120 22 H 0.109 0.891 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.165 4.165 26 C 0.293 3.707 27 F -0.198 7.198 28 F -0.189 7.189 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.934 -27.561 -11.886 33.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.351 5.351 3 C -0.005 4.005 4 C -0.082 4.082 5 N -0.298 5.298 6 C -0.079 4.079 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.122 0.878 12 C -0.181 4.181 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.298 3.702 19 O -0.396 6.396 20 C -0.173 4.173 21 C -0.140 4.140 22 H 0.127 0.873 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.204 4.204 26 C 0.257 3.743 27 F -0.179 7.179 28 F -0.170 7.170 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.110 0.890 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.396 -27.399 -12.509 33.383 hybrid contribution -0.592 1.119 0.942 1.578 sum -14.988 -26.281 -11.567 32.390 Atomic orbital electron populations 1.21839 0.79576 1.03312 1.01924 1.47777 1.06881 1.06206 1.74279 1.21426 0.98398 0.83671 0.97018 1.22259 0.96047 0.93183 0.96707 1.59933 1.51277 1.04906 1.13709 1.21655 0.99083 0.97207 0.90001 1.19801 0.85523 0.86909 0.85044 1.90523 1.59304 1.67137 1.29644 1.41865 1.50137 1.21384 1.06755 1.19768 1.30864 0.97545 0.94581 0.87839 1.25269 0.98212 0.99927 0.94643 1.69623 1.47261 1.40057 0.97462 0.85791 0.78852 0.81059 0.78578 1.19206 1.20808 1.20743 1.20530 0.88242 0.85232 0.76150 1.90793 1.13585 1.87032 1.48199 1.21738 0.98858 0.91632 1.05057 1.22644 0.98179 0.95664 0.97465 0.87265 1.22439 0.99144 0.92717 1.01287 1.22471 1.00773 0.97551 0.95237 1.23424 1.04366 0.93109 0.99451 1.21610 0.77214 0.85605 0.89858 1.92979 1.89392 1.61614 1.73869 1.93044 1.32431 1.96579 1.94940 0.92495 0.91065 0.90770 0.88618 0.90561 0.95724 0.90842 0.83279 0.93935 0.89587 0.77467 0.91959 0.87891 0.88073 0.89928 0.90323 0.90315 0.89889 0.88981 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.29 59.85 0.62 1.07 16 2 N -0.62 -6.33 2.87 -181.57 -0.52 -6.85 16 3 C 0.12 1.46 5.71 -4.04 -0.02 1.43 16 4 C 0.05 0.68 6.01 -3.82 -0.02 0.65 16 5 N -0.67 -11.60 6.13 -115.05 -0.70 -12.31 16 6 C 0.05 1.00 6.17 -4.98 -0.03 0.97 16 7 C 0.44 10.88 7.82 -10.99 -0.09 10.80 16 8 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16 9 N -0.56 -14.79 5.29 -10.96 -0.06 -14.85 16 10 C -0.30 -8.54 9.68 -14.93 -0.14 -8.68 16 11 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 13 N -0.90 -25.05 13.05 55.50 0.72 -24.32 16 14 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C 0.51 5.99 6.55 -10.98 -0.07 5.92 16 19 O -0.52 -8.53 14.08 5.56 0.08 -8.46 16 20 C -0.13 -0.95 3.19 -27.88 -0.09 -1.04 16 21 C -0.12 -0.94 2.40 -89.50 -0.21 -1.15 16 22 H 0.11 1.04 7.82 -51.93 -0.41 0.63 16 23 C -0.12 -0.50 6.36 -25.07 -0.16 -0.66 16 24 C -0.12 -0.52 6.91 -24.73 -0.17 -0.69 16 25 C -0.17 -1.02 6.41 -25.01 -0.16 -1.18 16 26 C 0.29 2.94 1.79 -25.55 -0.05 2.90 16 27 F -0.20 -2.40 14.05 2.25 0.03 -2.36 16 28 F -0.19 -2.57 16.74 2.25 0.04 -2.54 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 6.44 -51.93 -0.33 -0.06 16 31 H 0.07 0.38 7.89 -51.93 -0.41 -0.02 16 32 H 0.10 1.47 7.42 -51.93 -0.39 1.08 16 33 H 0.08 0.80 7.89 -51.93 -0.41 0.39 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.35 5.97 8.43 -39.29 -0.33 5.64 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 39 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.10 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.10 0.56 6.92 -51.93 -0.36 0.20 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.21 7.85 -51.93 -0.41 -0.19 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.09 0.56 8.11 -51.93 -0.42 0.13 16 48 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -36.62 397.15 -7.59 -44.21 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.52 Total: 10.53 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -0.70 Total: 10.82 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.56 Total: -58.34 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.17 Total: -24.76 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.07 Total: -4.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.62 -7.59 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753228179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.627 kcal (2) G-P(sol) polarization free energy of solvation -36.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds