Wall clock time and date at job start Wed Apr 1 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 N 1.46904 * 109.47106 * 180.02562 * 4 3 2 6 6 C 1.46902 * 111.00017 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47123 * 179.97438 * 6 5 4 8 8 O 1.21292 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99729 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99767 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00152 * 359.97438 * 10 9 7 12 12 C 1.38948 * 120.00112 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00078 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99942 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47521 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47076 * 120.00445 * 14 12 10 17 17 H 1.48509 * 109.47080 * 240.00143 * 14 12 10 18 18 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 19 19 O 1.21279 * 120.00031 * 180.02562 * 18 2 1 20 20 C 1.50699 * 119.99563 * 0.02562 * 18 2 1 21 21 C 1.53001 * 109.47045 * 179.97438 * 20 18 2 22 22 H 1.09003 * 110.01788 * 54.29776 * 21 20 18 23 23 C 1.54267 * 110.03521 * 175.68836 * 21 20 18 24 24 C 1.54889 * 104.19677 * 142.89387 * 23 21 20 25 25 C 1.54897 * 102.74741 * 322.05915 * 24 23 21 26 26 C 1.53880 * 110.02968 * 292.90721 * 21 20 18 27 27 F 1.39899 * 110.03160 * 359.97438 * 26 21 20 28 28 F 1.39900 * 110.02967 * 121.42989 * 26 21 20 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 1.09007 * 109.46869 * 300.00135 * 4 3 2 35 35 H 1.09000 * 109.47402 * 60.00317 * 4 3 2 36 36 H 1.00903 * 110.99882 * 56.04460 * 5 4 3 37 37 H 1.08995 * 109.47122 * 300.00372 * 6 5 4 38 38 H 1.09009 * 109.46353 * 60.00310 * 6 5 4 39 39 H 0.96996 * 120.00491 * 359.97438 * 9 7 6 40 40 H 0.96998 * 120.00209 * 179.97438 * 13 12 10 41 41 H 1.09004 * 109.47017 * 299.99442 * 20 18 2 42 42 H 1.09002 * 109.47507 * 59.99434 * 20 18 2 43 43 H 1.08992 * 110.48569 * 261.57435 * 23 21 20 44 44 H 1.09005 * 110.48572 * 24.21545 * 23 21 20 45 45 H 1.08992 * 110.75703 * 80.36994 * 24 23 21 46 46 H 1.08996 * 110.75640 * 203.74859 * 24 23 21 47 47 H 1.08998 * 110.48288 * 156.62137 * 25 24 23 48 48 H 1.08999 * 110.48719 * 279.12849 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 7 3.1865 2.9829 1.4426 6 6 3.4491 3.4392 2.8140 7 6 4.2024 4.7438 2.7738 8 8 4.4916 5.2445 1.7076 9 7 4.5548 5.3541 3.9226 10 6 5.2396 6.5412 3.8861 11 1 5.4971 6.9871 2.9367 12 6 5.6024 7.1707 5.0704 13 7 5.2895 6.6280 6.2256 14 14 6.5362 8.7878 5.0206 15 1 6.7650 9.1840 3.6078 16 1 5.7426 9.8390 5.7066 17 1 7.8427 8.6264 5.7078 18 6 2.1389 -1.1672 0.0005 19 8 3.3517 -1.1672 0.0010 20 6 1.3854 -2.4723 0.0005 21 6 2.3796 -3.6352 0.0005 22 1 3.0764 -3.5305 0.8322 23 6 1.6246 -4.9761 0.1095 24 6 2.4289 -5.9398 -0.7979 25 6 2.8345 -5.0322 -1.9858 26 6 3.1498 -3.6702 -1.3312 27 9 2.7200 -2.6289 -2.1608 28 9 4.5239 -3.5585 -1.0931 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 1.5000 1.8408 1.9563 35 1 3.0416 0.9508 1.9565 36 1 2.6903 3.6866 0.9165 37 1 2.5035 3.5811 3.3370 38 1 4.0454 2.6917 3.3376 39 1 4.3232 4.9539 4.7753 40 1 5.5431 7.0673 7.0524 41 1 0.7585 -2.5298 0.8904 42 1 0.7590 -2.5302 -0.8896 43 1 1.6258 -5.3319 1.1397 44 1 0.6036 -4.8698 -0.2572 45 1 3.3113 -6.3133 -0.2784 46 1 1.8018 -6.7638 -1.1380 47 1 3.7187 -5.4291 -2.4845 48 1 2.0098 -4.9370 -2.6920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753228179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:43 Heat of formation + Delta-G solvation = -202.999678 kcal Electronic energy + Delta-G solvation = -30706.331355 eV Core-core repulsion = 26044.452318 eV Total energy + Delta-G solvation = -4661.879036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.83122 -47.93108 -41.03804 -40.19159 -38.43496 -37.44581 -36.24471 -35.72702 -33.32466 -32.98578 -30.94552 -28.80893 -28.16397 -27.61168 -26.61770 -25.30413 -23.31956 -22.18645 -21.41252 -21.11782 -20.08485 -19.88452 -18.68241 -18.17979 -17.92579 -17.74791 -17.19970 -17.12556 -16.91233 -16.51653 -16.27406 -15.92798 -15.44580 -15.40618 -15.12812 -14.95992 -14.88654 -14.66257 -14.30892 -14.24924 -14.06808 -13.82591 -13.74625 -13.55436 -13.42985 -13.22259 -13.13184 -12.96884 -12.81560 -12.71859 -12.47766 -12.43176 -12.21106 -12.12751 -12.12346 -12.03858 -11.57270 -11.54326 -11.42466 -10.83328 -10.42805 -10.04938 -9.71621 -9.40476 -8.49355 -5.98565 1.35110 1.40435 1.55157 1.65631 1.92855 2.00422 2.28229 2.86494 2.94663 3.04029 3.17339 3.25499 3.36220 3.52202 3.64568 3.93687 4.01018 4.06195 4.15497 4.24600 4.26195 4.31018 4.34090 4.40936 4.42501 4.44695 4.53299 4.58444 4.63789 4.69234 4.73427 4.80924 4.86252 4.94906 4.97117 5.08528 5.11257 5.18115 5.36006 5.38606 5.48412 5.81628 6.03503 6.33561 6.41355 6.56468 7.09232 7.20626 7.51748 8.06968 8.68354 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001695 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.957143 B =16516.351684 C =16816.083421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.616 5.616 3 C 0.122 3.878 4 C 0.060 3.940 5 N -0.685 5.685 6 C 0.068 3.932 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.996 3.004 15 H -0.274 1.274 16 H -0.268 1.268 17 H -0.271 1.271 18 C 0.498 3.502 19 O -0.582 6.582 20 C -0.125 4.125 21 C -0.121 4.121 22 H 0.081 0.919 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.159 4.159 26 C 0.268 3.732 27 F -0.215 7.215 28 F -0.221 7.221 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.349 0.651 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.086 0.914 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 -28.959 -11.319 36.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.349 5.349 3 C -0.001 4.001 4 C -0.070 4.070 5 N -0.319 5.319 6 C -0.064 4.064 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.193 1.193 17 H -0.196 1.196 18 C 0.288 3.712 19 O -0.461 6.461 20 C -0.164 4.164 21 C -0.141 4.141 22 H 0.100 0.900 23 C -0.145 4.145 24 C -0.156 4.156 25 C -0.197 4.197 26 C 0.232 3.768 27 F -0.196 7.196 28 F -0.202 7.202 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.089 0.911 46 H 0.129 0.871 47 H 0.105 0.895 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.501 -28.827 -11.920 35.768 hybrid contribution 0.351 1.554 0.737 1.755 sum -17.150 -27.273 -11.183 34.103 Atomic orbital electron populations 1.22175 0.76406 1.05203 1.03516 1.47920 1.08734 1.04917 1.73296 1.21212 0.97565 0.85524 0.95848 1.22177 0.96322 0.90729 0.97742 1.59875 1.52905 1.06147 1.12965 1.21490 0.99642 0.93867 0.91398 1.20809 0.84649 0.88191 0.83901 1.90489 1.60756 1.68696 1.30990 1.41924 1.50351 1.21144 1.07470 1.19728 1.33255 0.99276 0.94255 0.90310 1.26083 0.98371 1.02958 0.93917 1.69679 1.47230 1.41215 0.97947 0.84836 0.77925 0.77057 0.78275 1.19851 1.19274 1.19638 1.21472 0.87920 0.86969 0.74869 1.90770 1.16412 1.87954 1.50962 1.21836 0.98526 0.88375 1.07651 1.22685 0.98068 0.98281 0.95037 0.90018 1.22473 0.99752 0.89998 1.02247 1.22518 1.01025 0.97864 0.94227 1.23463 1.04839 0.90995 1.00438 1.22480 0.75925 0.86823 0.91546 1.92928 1.89386 1.62791 1.74479 1.92970 1.35164 1.96808 1.95244 0.90936 0.88421 0.89812 0.92593 0.88404 0.92963 0.92800 0.83153 0.90898 0.88703 0.76933 0.91213 0.84494 0.85702 0.88650 0.87618 0.91132 0.87144 0.89511 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.29 127.77 1.31 1.89 16 2 N -0.62 -11.88 2.87 -846.75 -2.43 -14.32 16 3 C 0.12 3.04 5.71 86.38 0.49 3.53 16 4 C 0.06 1.64 6.01 86.30 0.52 2.15 16 5 N -0.69 -23.91 6.13 -517.90 -3.17 -27.09 16 6 C 0.07 2.55 6.17 85.56 0.53 3.07 16 7 C 0.44 21.94 7.82 87.66 0.69 22.62 16 8 O -0.62 -36.21 15.78 -3.07 -0.05 -36.26 16 9 N -0.57 -30.53 5.29 -306.99 -1.62 -32.15 16 10 C -0.34 -19.68 9.68 84.04 0.81 -18.87 16 11 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -50.61 13.05 21.66 0.28 -50.33 16 14 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 C 0.50 11.59 6.55 87.66 0.57 12.16 16 19 O -0.58 -20.34 14.08 -3.02 -0.04 -20.38 16 20 C -0.12 -1.51 3.19 29.85 0.10 -1.41 16 21 C -0.12 -1.79 2.40 -10.07 -0.02 -1.81 16 22 H 0.08 1.64 7.82 -2.39 -0.02 1.62 16 23 C -0.11 -0.56 6.36 31.67 0.20 -0.36 16 24 C -0.12 -0.71 6.91 31.89 0.22 -0.49 16 25 C -0.16 -1.79 6.41 31.71 0.20 -1.59 16 26 C 0.27 5.49 1.79 31.36 0.06 5.55 16 27 F -0.21 -5.34 14.05 44.97 0.63 -4.71 16 28 F -0.22 -6.58 16.74 44.97 0.75 -5.82 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.32 6.44 -2.39 -0.02 0.31 16 31 H 0.08 0.58 7.89 -2.38 -0.02 0.56 16 32 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 33 H 0.10 1.96 7.89 -2.39 -0.02 1.94 16 34 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.35 11.97 8.43 -89.69 -0.76 11.22 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 39 H 0.40 20.04 7.90 -92.71 -0.73 19.31 16 40 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.14 0.72 8.11 -2.39 -0.02 0.70 16 42 H 0.13 0.94 6.92 -2.39 -0.02 0.92 16 43 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 0.04 7.85 -2.38 -0.02 0.02 16 45 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 48 H 0.11 0.84 8.12 -2.39 -0.02 0.82 16 Total: -1.00 -85.34 397.15 2.02 -83.32 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.50 Total: 35.62 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 6.15 Total: 26.17 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -6.95 Total: -123.89 kcal Atomic # 8 Polarization: -56.55 SS G_CDS: -0.09 Total: -56.64 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 1.38 Total: -10.53 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -85.34 2.02 -83.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753228179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.683 kcal (2) G-P(sol) polarization free energy of solvation -85.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds