Wall clock time and date at job start Wed Apr 1 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.53006 * 109.46998 * 89.99772 * 3 2 1 5 5 N 1.46902 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99800 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47191 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.37100 * 120.00074 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99826 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00250 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00124 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99920 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47407 * 89.99997 * 14 12 10 16 16 H 1.48502 * 109.47127 * 210.00268 * 14 12 10 17 17 H 1.48503 * 109.47125 * 329.99841 * 14 12 10 18 18 C 1.34782 * 119.99992 * 179.97438 * 2 1 3 19 19 O 1.21276 * 119.99870 * 180.02562 * 18 2 1 20 20 C 1.50702 * 119.99925 * 0.02562 * 18 2 1 21 21 C 1.52999 * 109.46891 * 179.97438 * 20 18 2 22 22 H 1.09004 * 110.01600 * 305.69180 * 21 20 18 23 23 C 1.54273 * 110.02781 * 184.30569 * 21 20 18 24 24 C 1.54890 * 104.19305 * 217.10203 * 23 21 20 25 25 C 1.54882 * 102.74825 * 37.94527 * 24 23 21 26 26 C 1.53875 * 110.03573 * 67.08916 * 21 20 18 27 27 F 1.39896 * 110.02831 * 238.56896 * 26 21 20 28 28 F 1.39900 * 110.03245 * 359.97438 * 26 21 20 29 29 H 1.09002 * 109.47156 * 90.00140 * 1 2 3 30 30 H 1.09002 * 109.47201 * 210.00104 * 1 2 3 31 31 H 1.09001 * 109.47041 * 330.00278 * 1 2 3 32 32 H 1.08993 * 109.47452 * 329.99850 * 3 2 1 33 33 H 1.09000 * 109.47175 * 209.99640 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99945 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00058 * 4 3 2 36 36 H 1.00891 * 111.00138 * 56.04633 * 5 4 3 37 37 H 1.08993 * 109.47004 * 300.00108 * 6 5 4 38 38 H 1.09002 * 109.47091 * 59.99861 * 6 5 4 39 39 H 0.96999 * 120.00108 * 0.02562 * 9 7 6 40 40 H 0.97006 * 120.00370 * 179.97438 * 13 12 10 41 41 H 1.09001 * 109.46435 * 299.99175 * 20 18 2 42 42 H 1.08995 * 109.47007 * 59.98959 * 20 18 2 43 43 H 1.08993 * 110.48754 * 335.78056 * 23 21 20 44 44 H 1.09004 * 110.48550 * 98.29664 * 23 21 20 45 45 H 1.09003 * 110.75198 * 156.26318 * 24 23 21 46 46 H 1.09004 * 110.75521 * 279.44606 * 24 23 21 47 47 H 1.09003 * 110.48866 * 80.73432 * 25 24 23 48 48 H 1.09005 * 110.48756 * 203.37745 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1864 2.9829 1.4425 6 6 3.4491 3.4392 2.8139 7 6 4.2023 4.7438 2.7737 8 8 4.4915 5.2445 1.7074 9 7 4.5538 5.3547 3.9225 10 6 5.2386 6.5419 3.8859 11 1 5.4968 6.9873 2.9365 12 6 5.6014 7.1714 5.0703 13 7 6.2582 8.3090 5.0352 14 14 5.1554 6.4006 6.7123 15 1 6.2497 5.4963 7.1482 16 1 4.9636 7.4696 7.7251 17 1 3.8983 5.6232 6.5691 18 6 2.1389 -1.1672 0.0005 19 8 3.3516 -1.1672 0.0010 20 6 1.3853 -2.4724 0.0005 21 6 2.3796 -3.6352 0.0005 22 1 3.0762 -3.5305 -0.8313 23 6 1.6244 -4.9761 -0.1083 24 6 2.4289 -5.9398 0.7990 25 6 2.8346 -5.0323 1.9867 26 6 3.1499 -3.6702 1.3321 27 9 4.5239 -3.5586 1.0938 28 9 2.7211 -2.6283 2.1614 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.5000 1.8408 1.9563 35 1 3.0415 0.9507 1.9564 36 1 2.6902 3.6865 0.9165 37 1 2.5034 3.5812 3.3369 38 1 4.0452 2.6919 3.3376 39 1 4.3222 4.9545 4.7752 40 1 6.5112 8.7488 5.8620 41 1 0.7585 -2.5298 0.8904 42 1 0.7589 -2.5302 -0.8896 43 1 0.6036 -4.8698 0.2585 44 1 1.6235 -5.3309 -1.1390 45 1 1.8017 -6.7639 1.1391 46 1 3.3095 -6.3159 0.2781 47 1 2.0091 -4.9350 2.6919 48 1 3.7188 -5.4291 2.4854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753228187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:48 Heat of formation + Delta-G solvation = -168.505717 kcal Electronic energy + Delta-G solvation = -31035.005716 eV Core-core repulsion = 26374.622450 eV Total energy + Delta-G solvation = -4660.383266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.99499 -47.04448 -40.22970 -38.45253 -37.90345 -36.37327 -35.01073 -33.83923 -32.40415 -31.62495 -29.93561 -28.33010 -27.15791 -26.85286 -25.37648 -23.63488 -22.21249 -21.77109 -20.70076 -19.45591 -19.20602 -18.28884 -17.94777 -17.41024 -17.03706 -16.49806 -16.27991 -16.14752 -15.58674 -15.47616 -14.87584 -14.74699 -14.57140 -14.34683 -14.00863 -13.82862 -13.70914 -13.50602 -13.31650 -13.28237 -13.16923 -13.04805 -12.74885 -12.62421 -12.39942 -12.20105 -12.15946 -11.97128 -11.88292 -11.77960 -11.72239 -11.59721 -11.26669 -11.17554 -11.00517 -10.80510 -10.56106 -9.97133 -9.93641 -9.53333 -8.94624 -8.52818 -8.15463 -8.09696 -6.27337 -3.78522 2.44604 2.68405 3.05682 3.10782 3.17975 3.44259 3.55788 3.78587 3.79434 3.90490 4.13536 4.21452 4.30043 4.46826 4.54421 4.66800 4.70768 4.81991 4.86319 4.87764 4.94318 4.95548 5.05482 5.08723 5.17049 5.20581 5.24034 5.27665 5.29701 5.36085 5.42140 5.43847 5.60689 5.65712 5.70710 5.82577 5.89210 5.94100 6.02317 6.28950 7.09847 7.13361 7.61239 7.63082 7.99092 8.18539 8.63960 8.98886 9.46506 9.87090 10.85825 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.002020 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.426550 B =13860.950255 C =14789.622419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.118 3.882 4 C 0.048 3.952 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.451 3.549 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.040 3.960 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.511 3.489 19 O -0.521 6.521 20 C -0.133 4.133 21 C -0.120 4.120 22 H 0.109 0.891 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.166 4.166 26 C 0.293 3.707 27 F -0.189 7.189 28 F -0.197 7.197 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.349 0.651 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.273 0.727 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.280 -31.679 -8.137 37.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.352 5.352 3 C -0.005 4.005 4 C -0.083 4.083 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.237 3.763 8 O -0.445 6.445 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 C 0.298 3.702 19 O -0.396 6.396 20 C -0.173 4.173 21 C -0.139 4.139 22 H 0.127 0.873 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.204 4.204 26 C 0.257 3.743 27 F -0.170 7.170 28 F -0.178 7.178 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.168 0.832 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.676 -31.401 -8.808 36.629 hybrid contribution -1.177 0.131 1.932 2.266 sum -17.854 -31.270 -6.876 36.659 Atomic orbital electron populations 1.21828 0.79576 1.03392 1.01872 1.47787 1.06884 1.06193 1.74331 1.21397 0.98346 0.83769 0.96983 1.22270 0.96090 0.93066 0.96844 1.59918 1.51433 1.04996 1.13435 1.21688 0.99105 0.97024 0.90417 1.19697 0.85120 0.86743 0.84756 1.90562 1.58022 1.66675 1.29291 1.42203 1.52286 1.22378 1.06220 1.19437 1.30678 0.96348 0.96799 0.86264 1.25037 0.97142 0.96013 0.98039 1.69623 1.38341 1.15969 1.28278 0.86666 0.78934 0.79567 0.84182 1.19573 1.20209 1.19558 1.20544 0.88247 0.85245 0.76146 1.90793 1.13583 1.87033 1.48191 1.21736 0.98865 0.91628 1.05057 1.22642 0.98143 0.95652 0.97480 0.87318 1.22437 0.99168 0.92738 1.01235 1.22462 1.00764 0.97544 0.95249 1.23426 1.04418 0.93080 0.99443 1.21610 0.77210 0.85662 0.89832 1.93043 1.32446 1.96582 1.94931 1.92986 1.89411 1.61502 1.73878 0.92379 0.91080 0.90811 0.90504 0.88570 0.95722 0.90630 0.83165 0.93821 0.89425 0.79690 0.91650 0.88038 0.87930 0.90335 0.89971 0.89901 0.90328 0.88515 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.24 59.84 0.61 1.03 16 2 N -0.62 -6.04 2.87 -181.57 -0.52 -6.56 16 3 C 0.12 1.39 5.67 -4.04 -0.02 1.37 16 4 C 0.05 0.65 6.01 -3.82 -0.02 0.63 16 5 N -0.66 -11.21 6.13 -115.05 -0.70 -11.92 16 6 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 7 C 0.45 10.75 7.82 -10.99 -0.09 10.67 16 8 O -0.56 -15.72 15.78 5.55 0.09 -15.64 16 9 N -0.59 -14.67 5.09 -10.96 -0.06 -14.72 16 10 C -0.30 -8.85 10.16 -14.93 -0.15 -9.00 16 11 H 0.12 3.95 7.39 -52.48 -0.39 3.56 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.30 13.96 55.50 0.77 -25.52 16 14 Si 0.88 19.93 27.74 -169.99 -4.71 15.21 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 18 C 0.51 5.76 6.55 -10.98 -0.07 5.69 16 19 O -0.52 -8.30 14.08 5.56 0.08 -8.22 16 20 C -0.13 -0.90 3.19 -27.88 -0.09 -0.99 16 21 C -0.12 -0.89 2.40 -89.50 -0.21 -1.11 16 22 H 0.11 0.97 7.83 -51.93 -0.41 0.56 16 23 C -0.12 -0.46 6.36 -25.07 -0.16 -0.62 16 24 C -0.12 -0.51 6.91 -24.74 -0.17 -0.68 16 25 C -0.17 -1.05 6.41 -25.02 -0.16 -1.21 16 26 C 0.29 2.95 1.79 -25.56 -0.05 2.90 16 27 F -0.19 -2.58 16.74 2.25 0.04 -2.55 16 28 F -0.20 -2.44 14.04 2.25 0.03 -2.41 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 6.44 -51.93 -0.33 -0.07 16 31 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.10 1.40 7.42 -51.93 -0.39 1.01 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.35 5.76 8.43 -39.30 -0.33 5.43 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.37 8.10 5.76 -40.82 -0.24 7.86 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.10 0.56 6.92 -51.93 -0.36 0.20 16 42 H 0.10 0.41 8.11 -51.93 -0.42 -0.01 16 43 H 0.08 0.20 7.85 -51.93 -0.41 -0.21 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.10 0.50 8.12 -51.93 -0.42 0.07 16 48 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -37.90 394.29 -7.25 -45.15 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.50 Total: 10.63 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.71 Total: 10.60 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.51 Total: -58.73 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.96 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.71 Total: 15.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.90 -7.25 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753228187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.354 kcal (2) G-P(sol) polarization free energy of solvation -37.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds