Wall clock time and date at job start Wed Apr 1 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.53006 * 109.46998 * 89.99772 * 3 2 1 5 5 N 1.46902 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99800 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47191 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99731 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.37100 * 120.00074 * 180.02562 * 9 7 6 11 11 H 1.08004 * 119.99826 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00250 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00124 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99920 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47407 * 89.99997 * 14 12 10 16 16 H 1.48502 * 109.47127 * 210.00268 * 14 12 10 17 17 H 1.48503 * 109.47125 * 329.99841 * 14 12 10 18 18 C 1.34782 * 119.99992 * 179.97438 * 2 1 3 19 19 O 1.21276 * 119.99870 * 180.02562 * 18 2 1 20 20 C 1.50702 * 119.99925 * 0.02562 * 18 2 1 21 21 C 1.52999 * 109.46891 * 179.97438 * 20 18 2 22 22 H 1.09004 * 110.01600 * 305.69180 * 21 20 18 23 23 C 1.54273 * 110.02781 * 184.30569 * 21 20 18 24 24 C 1.54890 * 104.19305 * 217.10203 * 23 21 20 25 25 C 1.54882 * 102.74825 * 37.94527 * 24 23 21 26 26 C 1.53875 * 110.03573 * 67.08916 * 21 20 18 27 27 F 1.39896 * 110.02831 * 238.56896 * 26 21 20 28 28 F 1.39900 * 110.03245 * 359.97438 * 26 21 20 29 29 H 1.09002 * 109.47156 * 90.00140 * 1 2 3 30 30 H 1.09002 * 109.47201 * 210.00104 * 1 2 3 31 31 H 1.09001 * 109.47041 * 330.00278 * 1 2 3 32 32 H 1.08993 * 109.47452 * 329.99850 * 3 2 1 33 33 H 1.09000 * 109.47175 * 209.99640 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99945 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00058 * 4 3 2 36 36 H 1.00891 * 111.00138 * 56.04633 * 5 4 3 37 37 H 1.08993 * 109.47004 * 300.00108 * 6 5 4 38 38 H 1.09002 * 109.47091 * 59.99861 * 6 5 4 39 39 H 0.96999 * 120.00108 * 0.02562 * 9 7 6 40 40 H 0.97006 * 120.00370 * 179.97438 * 13 12 10 41 41 H 1.09001 * 109.46435 * 299.99175 * 20 18 2 42 42 H 1.08995 * 109.47007 * 59.98959 * 20 18 2 43 43 H 1.08993 * 110.48754 * 335.78056 * 23 21 20 44 44 H 1.09004 * 110.48550 * 98.29664 * 23 21 20 45 45 H 1.09003 * 110.75198 * 156.26318 * 24 23 21 46 46 H 1.09004 * 110.75521 * 279.44606 * 24 23 21 47 47 H 1.09003 * 110.48866 * 80.73432 * 25 24 23 48 48 H 1.09005 * 110.48756 * 203.37745 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4426 5 7 3.1864 2.9829 1.4425 6 6 3.4491 3.4392 2.8139 7 6 4.2023 4.7438 2.7737 8 8 4.4915 5.2445 1.7074 9 7 4.5538 5.3547 3.9225 10 6 5.2386 6.5419 3.8859 11 1 5.4968 6.9873 2.9365 12 6 5.6014 7.1714 5.0703 13 7 6.2582 8.3090 5.0352 14 14 5.1554 6.4006 6.7123 15 1 6.2497 5.4963 7.1482 16 1 4.9636 7.4696 7.7251 17 1 3.8983 5.6232 6.5691 18 6 2.1389 -1.1672 0.0005 19 8 3.3516 -1.1672 0.0010 20 6 1.3853 -2.4724 0.0005 21 6 2.3796 -3.6352 0.0005 22 1 3.0762 -3.5305 -0.8313 23 6 1.6244 -4.9761 -0.1083 24 6 2.4289 -5.9398 0.7990 25 6 2.8346 -5.0323 1.9867 26 6 3.1499 -3.6702 1.3321 27 9 4.5239 -3.5586 1.0938 28 9 2.7211 -2.6283 2.1614 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6085 2.0284 -0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.5000 1.8408 1.9563 35 1 3.0415 0.9507 1.9564 36 1 2.6902 3.6865 0.9165 37 1 2.5034 3.5812 3.3369 38 1 4.0452 2.6919 3.3376 39 1 4.3222 4.9545 4.7752 40 1 6.5112 8.7488 5.8620 41 1 0.7585 -2.5298 0.8904 42 1 0.7589 -2.5302 -0.8896 43 1 0.6036 -4.8698 0.2585 44 1 1.6235 -5.3309 -1.1390 45 1 1.8017 -6.7639 1.1391 46 1 3.3095 -6.3159 0.2781 47 1 2.0091 -4.9350 2.6919 48 1 3.7188 -5.4291 2.4854 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753228187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:47 Heat of formation + Delta-G solvation = -198.048815 kcal Electronic energy + Delta-G solvation = -31036.286801 eV Core-core repulsion = 26374.622450 eV Total energy + Delta-G solvation = -4661.664351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.82563 -47.92379 -41.03531 -40.34373 -38.43706 -37.46447 -36.26621 -35.76738 -33.78970 -33.00200 -31.00116 -28.81614 -28.26628 -27.60972 -26.56690 -25.17405 -23.30818 -22.18377 -21.43816 -21.26954 -20.38239 -19.96677 -18.66926 -18.14282 -17.96596 -17.70314 -17.26982 -17.12792 -17.01078 -16.68362 -16.22575 -15.71948 -15.43312 -15.33143 -15.24926 -14.94512 -14.79494 -14.72512 -14.35607 -14.30361 -14.22043 -14.01304 -13.83084 -13.73674 -13.46581 -13.25737 -13.12145 -12.98852 -12.83631 -12.73885 -12.47171 -12.44021 -12.21911 -12.12509 -12.05530 -11.99709 -11.57042 -11.55427 -11.42066 -10.82721 -10.52256 -10.28557 -9.70590 -9.41856 -8.44112 -6.05362 1.27613 1.33612 1.42112 1.65416 1.89381 1.94414 2.20498 2.72435 2.87106 3.04177 3.11454 3.25758 3.35225 3.44037 3.65133 3.94322 3.98432 4.06434 4.10715 4.15652 4.25686 4.31138 4.34327 4.36051 4.40337 4.43713 4.49512 4.58519 4.64090 4.68275 4.73711 4.82401 4.86358 4.95834 4.97590 5.08498 5.11283 5.18079 5.35964 5.45860 5.51784 5.83538 5.95767 6.32393 6.41433 6.55918 6.83755 7.21250 7.34974 7.90768 8.73417 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.002020 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.426550 B =13860.950255 C =14789.622419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.616 5.616 3 C 0.122 3.878 4 C 0.060 3.940 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.056 0.944 12 C -0.015 4.015 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.231 1.231 18 C 0.498 3.502 19 O -0.581 6.581 20 C -0.125 4.125 21 C -0.120 4.120 22 H 0.083 0.917 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.161 4.161 26 C 0.267 3.733 27 F -0.221 7.221 28 F -0.215 7.215 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.350 0.650 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.390 0.610 40 H 0.280 0.720 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.113 0.887 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.546 -35.003 -6.464 42.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.349 5.349 3 C -0.002 4.002 4 C -0.070 4.070 5 N -0.321 5.321 6 C -0.068 4.068 7 C 0.236 3.764 8 O -0.497 6.497 9 N -0.231 5.231 10 C -0.460 4.460 11 H 0.074 0.926 12 C -0.214 4.214 13 N -0.572 5.572 14 Si 0.785 3.215 15 H -0.184 1.184 16 H -0.196 1.196 17 H -0.155 1.155 18 C 0.288 3.712 19 O -0.461 6.461 20 C -0.164 4.164 21 C -0.140 4.140 22 H 0.102 0.898 23 C -0.144 4.144 24 C -0.156 4.156 25 C -0.199 4.199 26 C 0.232 3.768 27 F -0.202 7.202 28 F -0.196 7.196 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.170 0.830 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.225 0.775 40 H 0.090 0.910 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.090 0.910 47 H 0.131 0.869 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.008 -34.751 -7.145 41.231 hybrid contribution 0.203 1.245 1.283 1.799 sum -20.805 -33.506 -5.863 39.873 Atomic orbital electron populations 1.22160 0.76435 1.05024 1.03669 1.47928 1.08713 1.04920 1.73332 1.21202 0.97646 0.85603 0.95777 1.22172 0.96306 0.90568 0.97944 1.59858 1.53059 1.06185 1.13025 1.21582 1.00028 0.93395 0.91757 1.20876 0.83870 0.88012 0.83610 1.90538 1.59604 1.68410 1.31159 1.42019 1.52225 1.21267 1.07587 1.19018 1.33208 0.98631 0.95102 0.92599 1.26127 0.96063 0.96186 1.02999 1.69800 1.39324 1.17896 1.30224 0.85361 0.80443 0.79036 0.76664 1.18431 1.19597 1.15455 1.21469 0.87915 0.86971 0.74880 1.90771 1.16403 1.87951 1.50960 1.21833 0.98518 0.88395 1.07649 1.22681 0.98053 0.98267 0.94951 0.89819 1.22472 0.99692 0.89995 1.02273 1.22510 1.01072 0.97839 0.94210 1.23468 1.04748 0.91146 1.00491 1.22492 0.75945 0.86766 0.91633 1.92968 1.35203 1.96804 1.95238 1.92932 1.89415 1.62703 1.74540 0.90481 0.88619 0.90082 0.88255 0.92312 0.92887 0.93041 0.83044 0.89952 0.87962 0.77472 0.91046 0.85880 0.84331 0.87711 0.88469 0.87254 0.91050 0.86850 0.89628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.24 127.77 1.31 1.80 16 2 N -0.62 -11.04 2.87 -846.75 -2.43 -13.48 16 3 C 0.12 2.83 5.67 86.38 0.49 3.32 16 4 C 0.06 1.56 6.01 86.31 0.52 2.08 16 5 N -0.69 -22.82 6.13 -517.91 -3.17 -25.99 16 6 C 0.06 2.22 6.17 85.56 0.53 2.74 16 7 C 0.45 21.55 7.82 87.66 0.69 22.24 16 8 O -0.61 -35.66 15.78 -3.06 -0.05 -35.71 16 9 N -0.59 -29.20 5.09 -306.99 -1.56 -30.76 16 10 C -0.33 -20.03 10.16 84.04 0.85 -19.17 16 11 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 12 C -0.01 -0.85 5.50 84.93 0.47 -0.39 16 13 N -0.93 -57.34 13.96 21.66 0.30 -57.04 16 14 Si 0.97 40.03 27.74 68.60 1.90 41.93 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 18 C 0.50 10.95 6.55 87.66 0.57 11.52 16 19 O -0.58 -19.59 14.08 -3.02 -0.04 -19.63 16 20 C -0.12 -1.37 3.19 29.85 0.10 -1.28 16 21 C -0.12 -1.65 2.40 -10.07 -0.02 -1.67 16 22 H 0.08 1.55 7.83 -2.39 -0.02 1.54 16 23 C -0.11 -0.47 6.36 31.67 0.20 -0.26 16 24 C -0.12 -0.66 6.91 31.88 0.22 -0.44 16 25 C -0.16 -1.81 6.41 31.70 0.20 -1.61 16 26 C 0.27 5.40 1.79 31.36 0.06 5.46 16 27 F -0.22 -6.52 16.74 44.97 0.75 -5.77 16 28 F -0.21 -5.34 14.04 44.97 0.63 -4.71 16 29 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.10 0.24 6.44 -2.39 -0.02 0.22 16 31 H 0.08 0.50 8.07 -2.39 -0.02 0.48 16 32 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 33 H 0.06 1.82 7.42 -2.39 -0.02 1.80 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.35 11.43 8.43 -89.70 -0.76 10.68 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.39 16.07 5.76 -92.71 -0.53 15.54 16 40 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 41 H 0.12 0.85 6.92 -2.39 -0.02 0.84 16 42 H 0.14 0.52 8.11 -2.39 -0.02 0.50 16 43 H 0.10 -0.04 7.85 -2.39 -0.02 -0.06 16 44 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 45 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 48 H 0.09 1.06 8.11 -2.38 -0.02 1.04 16 Total: -1.00 -93.11 394.29 2.15 -90.97 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.36 Total: 35.86 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 6.18 Total: 24.33 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -6.87 Total: -127.27 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.09 Total: -55.34 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 1.38 Total: -10.48 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 1.90 Total: 41.93 kcal Total: -93.11 2.15 -90.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753228187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.083 kcal (2) G-P(sol) polarization free energy of solvation -93.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds