Wall clock time and date at job start Wed Apr 1 2020 05:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28472 * 124.87895 * 2 1 4 4 C 1.31810 * 110.07101 * 180.15930 * 3 2 1 5 5 C 1.47710 * 126.51935 * 179.81982 * 4 3 2 6 6 O 1.21570 * 120.00264 * 179.69307 * 5 4 3 7 7 N 1.34781 * 119.99959 * 359.68867 * 5 4 3 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00266 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47173 * 90.00244 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00808 * 19 17 15 22 22 H 1.48507 * 109.47259 * 330.00314 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 C 1.41504 * 106.96245 * 359.55671 * 4 3 2 25 25 C 1.35027 * 124.89066 * 179.66125 * 2 1 3 26 26 C 1.50708 * 126.38449 * 359.97438 * 25 2 1 27 27 C 1.52997 * 117.49947 * 213.74700 * 26 25 2 28 28 C 1.52999 * 117.49788 * 145.08586 * 26 25 2 29 29 H 1.09000 * 109.47266 * 270.33769 * 1 2 3 30 30 H 1.08996 * 109.47463 * 30.34132 * 1 2 3 31 31 H 1.09003 * 109.46694 * 150.33722 * 1 2 3 32 32 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 33 33 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 34 34 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 35 35 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 36 36 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 37 37 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 38 38 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 39 39 H 0.97002 * 120.00299 * 179.97438 * 18 17 15 40 40 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 41 41 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 42 42 H 1.07996 * 127.24940 * 180.25869 * 24 4 3 43 43 H 1.08996 * 115.54633 * 359.42124 * 26 25 2 44 44 H 1.08996 * 117.50082 * 0.02562 * 27 26 25 45 45 H 1.09005 * 117.49551 * 145.02138 * 27 26 25 46 46 H 1.08998 * 117.49871 * 214.97894 * 28 26 25 47 47 H 1.09003 * 117.49899 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4740 0.7171 -0.0034 5 6 4.6272 1.6401 -0.0083 6 8 5.7596 1.1980 -0.0056 7 7 4.4239 2.9724 -0.0160 8 6 5.5676 3.8879 -0.0214 9 6 5.8057 4.5777 -1.3768 10 7 4.9183 5.6501 -0.8749 11 6 5.4517 6.9763 -1.2138 12 6 5.3225 7.2055 -2.6976 13 8 4.8346 6.3483 -3.4034 14 7 5.7490 8.3631 -3.2403 15 6 5.6311 8.5718 -4.5901 16 1 5.1959 7.8089 -5.2185 17 6 6.0714 9.7650 -5.1497 18 7 5.9578 9.9653 -6.4435 19 14 6.8234 11.0850 -4.0627 20 1 8.2906 10.8745 -3.9717 21 1 6.5504 12.4225 -4.6473 22 1 6.2270 11.0072 -2.7049 23 6 5.2414 5.2901 0.5235 24 6 3.5272 -0.6970 0.0047 25 6 2.2373 -1.1075 0.0065 26 6 1.7535 -2.5348 0.0155 27 6 2.5957 -3.5615 0.7755 28 6 2.5804 -3.5659 -0.7552 29 1 -0.3634 0.0061 1.0276 30 1 -0.3634 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5086 32 1 3.5203 3.3252 -0.0187 33 1 6.4663 3.4475 0.4106 34 1 6.8363 4.8971 -1.5319 35 1 5.3963 4.0305 -2.2260 36 1 4.8902 7.7414 -0.6776 37 1 6.5022 7.0293 -0.9280 38 1 6.1396 9.0485 -2.6758 39 1 6.2648 10.7985 -6.8341 40 1 4.3812 5.3121 1.1924 41 1 6.1065 5.8171 0.9258 42 1 4.4108 -1.3178 0.0084 43 1 0.6714 -2.6642 0.0267 44 1 3.4995 -3.2046 1.2693 45 1 2.0675 -4.3666 1.2863 46 1 2.0423 -4.3739 -1.2507 47 1 3.4742 -3.2118 -1.2691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753378453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:53 Heat of formation + Delta-G solvation = 86.867994 kcal Electronic energy + Delta-G solvation = -29270.773204 eV Core-core repulsion = 25072.152959 eV Total energy + Delta-G solvation = -4198.620245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.97755 -40.42349 -38.84352 -37.74949 -37.64833 -34.10497 -33.87062 -33.55956 -31.66144 -30.72219 -29.85227 -27.79255 -26.02145 -25.64305 -24.17350 -23.54483 -22.85509 -22.83457 -20.82281 -19.86421 -19.75883 -19.29280 -18.30649 -17.88870 -16.77342 -16.58836 -16.20532 -16.04031 -15.51745 -15.31756 -15.06239 -14.85990 -14.70921 -14.54078 -14.25501 -13.95016 -13.59850 -13.18669 -13.12939 -13.02726 -12.96745 -12.52720 -12.39072 -12.25655 -12.03482 -11.94316 -11.57506 -11.49734 -11.32595 -11.19673 -11.12341 -10.84909 -10.74686 -10.58230 -10.18343 -9.95493 -9.54609 -9.36764 -9.04830 -9.00473 -8.71759 -8.31750 -8.15306 -6.28953 -3.80213 1.37553 1.76365 2.13013 3.03932 3.05196 3.07881 3.16109 3.31879 3.47816 3.76003 3.88212 3.99199 4.07768 4.11943 4.36278 4.44582 4.48051 4.48871 4.62111 4.67509 4.79408 4.91261 4.95639 5.06314 5.17492 5.20185 5.21088 5.36599 5.41184 5.45743 5.47883 5.58053 5.62280 5.64593 5.70163 5.73506 5.81180 5.95161 6.14307 6.19352 6.43809 6.48923 6.61438 7.09239 7.43281 7.60092 7.73856 8.16479 8.18875 8.62280 8.97513 9.44669 9.85813 10.84276 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.001807 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.288312 B =15489.267675 C =15885.266266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.278 5.278 3 N -0.255 5.255 4 C -0.011 4.011 5 C 0.608 3.392 6 O -0.536 6.536 7 N -0.689 5.689 8 C 0.114 3.886 9 C 0.009 3.991 10 N -0.453 5.453 11 C 0.007 3.993 12 C 0.453 3.547 13 O -0.559 6.559 14 N -0.592 5.592 15 C -0.304 4.304 16 H 0.119 0.881 17 C 0.041 3.959 18 N -0.882 5.882 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.008 4.008 24 C -0.176 4.176 25 C 0.044 3.956 26 C -0.099 4.099 27 C -0.161 4.161 28 C -0.162 4.162 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.413 0.587 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.160 0.840 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 -22.825 19.947 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.066 5.066 3 N -0.091 5.091 4 C -0.171 4.171 5 C 0.393 3.607 6 O -0.411 6.411 7 N -0.339 5.339 8 C 0.007 3.993 9 C -0.121 4.121 10 N -0.176 5.176 11 C -0.126 4.126 12 C 0.238 3.762 13 O -0.440 6.440 14 N -0.232 5.232 15 C -0.432 4.432 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.522 5.522 19 Si 0.706 3.294 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.138 4.138 24 C -0.204 4.204 25 C -0.079 4.079 26 C -0.119 4.119 27 C -0.199 4.199 28 C -0.199 4.199 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.249 0.751 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.202 0.798 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.178 0.822 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.832 -22.561 19.043 31.118 hybrid contribution 1.362 1.054 0.819 1.907 sum -8.471 -21.507 19.863 30.477 Atomic orbital electron populations 1.22187 0.73308 1.05625 1.04468 1.45226 1.07659 1.02450 1.51297 1.73585 1.02955 1.13417 1.19096 1.21793 0.90718 0.93949 1.10644 1.16851 0.86544 0.81406 0.75928 1.90786 1.22532 1.77157 1.50578 1.45393 1.10282 1.04667 1.73577 1.22400 0.90120 0.89237 0.97504 1.24309 0.96734 0.92868 0.98163 1.68467 1.44395 1.01228 1.03478 1.22504 0.98993 0.94157 0.96904 1.19600 0.84315 0.83770 0.88507 1.90572 1.47187 1.44050 1.62238 1.42212 1.56468 1.15571 1.08932 1.19424 1.38816 1.03616 0.81388 0.86335 1.25036 0.97852 0.97497 0.95827 1.69620 1.46473 1.26136 1.09999 0.86667 0.80073 0.82273 0.80341 1.19671 1.20190 1.19506 1.24404 1.01546 0.94138 0.93693 1.21370 0.96401 0.93448 1.09205 1.20417 0.90563 0.89094 1.07872 1.20280 0.98184 0.85074 1.08354 1.23110 1.01960 1.00016 0.94805 1.23128 1.02208 0.99991 0.94602 0.89652 0.88152 0.88713 0.75059 0.87639 0.90528 0.88337 0.89009 0.92526 0.79751 0.91648 0.88872 0.89994 0.82240 0.86636 0.87924 0.87981 0.87933 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 11.05 59.85 0.66 1.07 16 2 N -0.28 -2.65 3.70 -63.85 -0.24 -2.89 16 3 N -0.25 -3.15 11.67 33.42 0.39 -2.76 16 4 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 5 C 0.61 9.03 7.83 -12.39 -0.10 8.94 16 6 O -0.54 -9.24 16.55 5.30 0.09 -9.16 16 7 N -0.69 -9.33 5.37 -55.93 -0.30 -9.63 16 8 C 0.11 1.50 4.40 -69.62 -0.31 1.19 16 9 C 0.01 0.15 6.56 -2.76 -0.02 0.13 16 10 N -0.45 -7.28 5.95 -239.87 -1.43 -8.71 16 11 C 0.01 0.11 5.31 -4.97 -0.03 0.08 16 12 C 0.45 10.50 7.59 -10.99 -0.08 10.42 16 13 O -0.56 -15.36 15.12 5.55 0.08 -15.28 16 14 N -0.59 -14.35 5.09 -10.97 -0.06 -14.41 16 15 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 16 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 17 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 18 N -0.88 -26.11 13.96 55.50 0.77 -25.33 16 19 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.47 6.52 56.52 0.37 -5.11 16 23 C -0.01 -0.09 7.71 -2.76 -0.02 -0.12 16 24 C -0.18 -2.02 9.86 -39.36 -0.39 -2.41 16 25 C 0.04 0.41 6.60 -82.21 -0.54 -0.13 16 26 C -0.10 -0.58 5.93 -91.77 -0.54 -1.13 16 27 C -0.16 -0.80 10.05 -26.69 -0.27 -1.07 16 28 C -0.16 -0.85 10.06 -26.69 -0.27 -1.12 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.23 7.13 -51.93 -0.37 -0.14 16 32 H 0.41 5.37 8.46 -40.82 -0.35 5.03 16 33 H 0.11 1.35 7.51 -51.93 -0.39 0.96 16 34 H 0.08 1.19 7.78 -51.93 -0.40 0.78 16 35 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 38 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 39 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 42 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.12 0.44 7.18 -51.93 -0.37 0.07 16 44 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 45 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 0.64 7.97 -51.93 -0.41 0.23 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -37.44 397.53 -8.83 -46.28 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.68 Total: 13.73 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.74 Total: 7.27 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.85 Total: -63.72 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.17 Total: -24.43 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.44 -8.83 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.144 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds