Wall clock time and date at job start Wed Apr 1 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28472 * 124.87895 * 2 1 4 4 C 1.31810 * 110.07101 * 180.15930 * 3 2 1 5 5 C 1.47710 * 126.51935 * 179.81982 * 4 3 2 6 6 O 1.21570 * 120.00264 * 179.69307 * 5 4 3 7 7 N 1.34781 * 119.99959 * 359.68867 * 5 4 3 8 8 C 1.46500 * 120.00005 * 180.02562 * 7 5 4 9 9 C 1.53936 * 113.83039 * 106.32600 * 8 7 5 10 10 N 1.47963 * 86.18081 * 90.64735 * 9 8 7 11 11 C 1.46905 * 110.99442 * 137.58205 * 10 9 8 12 12 C 1.50701 * 109.47159 * 70.64116 * 11 10 9 13 13 O 1.21289 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99976 * 179.97438 * 12 11 10 15 15 C 1.37091 * 120.00115 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 12 17 17 C 1.38953 * 120.00229 * 180.02562 * 15 14 12 18 18 N 1.31405 * 120.00266 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47173 * 90.00244 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00808 * 19 17 15 22 22 H 1.48507 * 109.47259 * 330.00314 * 19 17 15 23 23 C 1.47962 * 90.76258 * 24.69072 * 10 9 8 24 24 C 1.41504 * 106.96245 * 359.55671 * 4 3 2 25 25 C 1.35027 * 124.89066 * 179.66125 * 2 1 3 26 26 C 1.50708 * 126.38449 * 359.97438 * 25 2 1 27 27 C 1.52997 * 117.49947 * 213.74700 * 26 25 2 28 28 C 1.52999 * 117.49788 * 145.08586 * 26 25 2 29 29 H 1.09000 * 109.47266 * 270.33769 * 1 2 3 30 30 H 1.08996 * 109.47463 * 30.34132 * 1 2 3 31 31 H 1.09003 * 109.46694 * 150.33722 * 1 2 3 32 32 H 0.97002 * 120.00027 * 359.97438 * 7 5 4 33 33 H 1.09002 * 112.93917 * 334.66429 * 8 7 5 34 34 H 1.09003 * 113.75649 * 204.96870 * 9 8 7 35 35 H 1.09007 * 113.75829 * 336.32990 * 9 8 7 36 36 H 1.08998 * 109.46445 * 190.64141 * 11 10 9 37 37 H 1.09000 * 109.47062 * 310.63837 * 11 10 9 38 38 H 0.97005 * 119.99820 * 0.02562 * 14 12 11 39 39 H 0.97002 * 120.00299 * 179.97438 * 18 17 15 40 40 H 1.08991 * 113.75516 * 220.99362 * 23 10 9 41 41 H 1.08998 * 113.86153 * 89.63735 * 23 10 9 42 42 H 1.07996 * 127.24940 * 180.25869 * 24 4 3 43 43 H 1.08996 * 115.54633 * 359.42124 * 26 25 2 44 44 H 1.08996 * 117.50082 * 0.02562 * 27 26 25 45 45 H 1.09005 * 117.49551 * 145.02138 * 27 26 25 46 46 H 1.08998 * 117.49871 * 214.97894 * 28 26 25 47 47 H 1.09003 * 117.49899 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1996 1.0539 0.0000 4 6 3.4740 0.7171 -0.0034 5 6 4.6272 1.6401 -0.0083 6 8 5.7596 1.1980 -0.0056 7 7 4.4239 2.9724 -0.0160 8 6 5.5676 3.8879 -0.0214 9 6 5.8057 4.5777 -1.3768 10 7 4.9183 5.6501 -0.8749 11 6 5.4517 6.9763 -1.2138 12 6 5.3225 7.2055 -2.6976 13 8 4.8346 6.3483 -3.4034 14 7 5.7490 8.3631 -3.2403 15 6 5.6311 8.5718 -4.5901 16 1 5.1959 7.8089 -5.2185 17 6 6.0714 9.7650 -5.1497 18 7 5.9578 9.9653 -6.4435 19 14 6.8234 11.0850 -4.0627 20 1 8.2906 10.8745 -3.9717 21 1 6.5504 12.4225 -4.6473 22 1 6.2270 11.0072 -2.7049 23 6 5.2414 5.2901 0.5235 24 6 3.5272 -0.6970 0.0047 25 6 2.2373 -1.1075 0.0065 26 6 1.7535 -2.5348 0.0155 27 6 2.5957 -3.5615 0.7755 28 6 2.5804 -3.5659 -0.7552 29 1 -0.3634 0.0061 1.0276 30 1 -0.3634 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5086 32 1 3.5203 3.3252 -0.0187 33 1 6.4663 3.4475 0.4106 34 1 6.8363 4.8971 -1.5319 35 1 5.3963 4.0305 -2.2260 36 1 4.8902 7.7414 -0.6776 37 1 6.5022 7.0293 -0.9280 38 1 6.1396 9.0485 -2.6758 39 1 6.2648 10.7985 -6.8341 40 1 4.3812 5.3121 1.1924 41 1 6.1065 5.8171 0.9258 42 1 4.4108 -1.3178 0.0084 43 1 0.6714 -2.6642 0.0267 44 1 3.4995 -3.2046 1.2693 45 1 2.0675 -4.3666 1.2863 46 1 2.0423 -4.3739 -1.2507 47 1 3.4742 -3.2118 -1.2691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753378453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:50 Heat of formation + Delta-G solvation = 55.144067 kcal Electronic energy + Delta-G solvation = -29272.148856 eV Core-core repulsion = 25072.152959 eV Total energy + Delta-G solvation = -4199.995897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.77729 -41.63200 -40.27001 -39.34065 -38.13080 -36.02435 -35.07149 -34.41265 -33.76840 -31.57846 -31.09706 -28.56752 -27.35064 -27.08878 -25.34646 -24.48759 -23.87173 -23.23365 -21.69640 -21.35023 -20.86253 -20.67697 -20.16962 -18.62288 -17.84688 -17.74053 -17.34947 -17.19886 -16.87448 -16.53710 -16.37560 -15.95967 -15.77500 -15.43751 -15.27751 -15.17563 -14.83543 -14.76276 -14.46944 -14.30707 -13.76253 -13.67767 -13.50047 -13.44762 -13.07007 -12.84427 -12.70516 -12.44164 -12.40564 -12.36631 -12.06864 -12.01861 -11.98279 -11.91830 -11.51724 -11.39646 -11.30710 -10.43438 -10.31927 -10.25877 -10.02669 -9.77836 -9.69125 -8.42455 -6.03638 0.43477 0.95744 1.29305 1.35079 1.44131 1.48544 1.95102 2.03674 2.22351 2.26747 2.67383 3.02877 3.09288 3.14079 3.21534 3.45145 3.51882 3.76231 3.81188 3.98277 4.08139 4.11458 4.13366 4.23274 4.35477 4.39709 4.40861 4.44841 4.50284 4.53139 4.64011 4.64352 4.70546 4.78363 4.82384 4.86727 5.02725 5.18323 5.26466 5.27305 5.32446 5.44812 5.52148 5.78304 5.87706 5.98486 6.37592 6.58385 6.83777 6.87152 7.08273 7.38386 7.96505 8.75446 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.001807 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.288312 B =15489.267675 C =15885.266266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.273 5.273 3 N -0.271 5.271 4 C -0.042 4.042 5 C 0.605 3.395 6 O -0.569 6.569 7 N -0.684 5.684 8 C 0.119 3.881 9 C 0.002 3.998 10 N -0.480 5.480 11 C 0.019 3.981 12 C 0.448 3.552 13 O -0.613 6.613 14 N -0.591 5.591 15 C -0.329 4.329 16 H 0.051 0.949 17 C -0.017 4.017 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.229 1.229 23 C 0.014 3.986 24 C -0.200 4.200 25 C 0.056 3.944 26 C -0.106 4.106 27 C -0.155 4.155 28 C -0.163 4.163 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.415 0.585 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.158 0.842 43 H 0.145 0.855 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 -22.345 23.904 34.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.062 5.062 3 N -0.108 5.108 4 C -0.200 4.200 5 C 0.391 3.609 6 O -0.447 6.447 7 N -0.334 5.334 8 C 0.013 3.987 9 C -0.129 4.129 10 N -0.204 5.204 11 C -0.113 4.113 12 C 0.236 3.764 13 O -0.497 6.497 14 N -0.233 5.233 15 C -0.458 4.458 16 H 0.069 0.931 17 C -0.215 4.215 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.153 1.153 23 C -0.115 4.115 24 C -0.228 4.228 25 C -0.068 4.068 26 C -0.125 4.125 27 C -0.192 4.192 28 C -0.201 4.201 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.252 0.748 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.175 0.825 43 H 0.163 0.837 44 H 0.108 0.892 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.423 -22.072 23.036 33.563 hybrid contribution 1.403 0.740 -0.519 1.668 sum -9.020 -21.333 22.516 32.302 Atomic orbital electron populations 1.22650 0.70537 1.07171 1.06357 1.45711 1.09172 1.01867 1.49430 1.73513 1.02715 1.14794 1.19817 1.21724 0.90894 0.94536 1.12879 1.17135 0.86659 0.81903 0.75216 1.90745 1.23850 1.77740 1.52359 1.45406 1.10587 1.04473 1.72902 1.22400 0.90352 0.90267 0.95723 1.24249 0.96689 0.93776 0.98165 1.68444 1.44907 1.00628 1.06398 1.22493 1.01949 0.95487 0.91357 1.20956 0.81782 0.82282 0.91358 1.90557 1.48909 1.45659 1.64530 1.42026 1.57216 1.16788 1.07276 1.18980 1.40430 1.03101 0.83336 0.93082 1.26161 0.97576 1.00150 0.97641 1.69810 1.47578 1.27413 1.12827 0.85328 0.79451 0.77089 0.79398 1.18113 1.19989 1.15258 1.24484 1.03689 0.91921 0.91368 1.21508 0.97738 0.92848 1.10741 1.20860 0.89774 0.90610 1.05589 1.20518 0.99834 0.82909 1.09257 1.23180 1.01452 0.99950 0.94641 1.23185 1.01710 1.00164 0.94995 0.87523 0.88153 0.85763 0.74792 0.86986 0.90001 0.92841 0.85777 0.88805 0.77408 0.91140 0.86893 0.86518 0.82462 0.83692 0.89155 0.85674 0.85888 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 11.05 127.77 1.41 1.94 16 2 N -0.27 -4.98 3.70 -355.93 -1.32 -6.29 16 3 N -0.27 -6.81 11.67 -48.17 -0.56 -7.37 16 4 C -0.04 -1.19 7.13 42.46 0.30 -0.89 16 5 C 0.60 18.95 7.83 86.75 0.68 19.63 16 6 O -0.57 -20.76 16.55 -3.93 -0.07 -20.82 16 7 N -0.68 -18.96 5.37 -449.12 -2.41 -21.37 16 8 C 0.12 3.06 4.40 46.56 0.20 3.26 16 9 C 0.00 0.05 6.56 86.41 0.57 0.62 16 10 N -0.48 -14.71 5.95 -912.82 -5.43 -20.14 16 11 C 0.02 0.57 5.31 85.56 0.45 1.02 16 12 C 0.45 20.88 7.59 87.66 0.67 21.54 16 13 O -0.61 -35.45 15.12 -3.06 -0.05 -35.50 16 14 N -0.59 -28.47 5.09 -306.99 -1.56 -30.03 16 15 C -0.33 -19.77 10.16 84.04 0.85 -18.92 16 16 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 17 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 18 N -0.94 -57.47 13.96 21.66 0.30 -57.16 16 19 Si 0.97 39.24 27.74 68.60 1.90 41.14 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 23 C 0.01 0.27 7.71 86.41 0.67 0.94 16 24 C -0.20 -4.82 9.86 22.41 0.22 -4.60 16 25 C 0.06 1.01 6.60 41.41 0.27 1.28 16 26 C -0.11 -1.02 5.93 -11.54 -0.07 -1.09 16 27 C -0.15 -1.25 10.05 30.62 0.31 -0.95 16 28 C -0.16 -1.47 10.06 30.62 0.31 -1.16 16 29 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.19 7.13 -2.39 -0.02 0.17 16 32 H 0.42 11.00 8.46 -92.71 -0.78 10.22 16 33 H 0.11 2.78 7.51 -2.39 -0.02 2.76 16 34 H 0.08 2.54 7.78 -2.39 -0.02 2.52 16 35 H 0.05 2.21 8.09 -2.38 -0.02 2.19 16 36 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.09 2.25 7.69 -2.39 -0.02 2.23 16 38 H 0.39 15.38 5.76 -92.70 -0.53 14.85 16 39 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.12 1.61 7.80 -2.39 -0.02 1.59 16 42 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.15 0.54 7.18 -2.39 -0.02 0.53 16 44 H 0.09 0.97 7.94 -2.39 -0.02 0.96 16 45 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 1.09 7.97 -2.39 -0.02 1.07 16 Total: -1.00 -91.50 397.53 -2.23 -93.73 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.35 Total: 41.68 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 7.31 Total: 22.14 kcal Atomic # 7 Polarization: -131.39 SS G_CDS: -10.98 Total: -142.37 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -0.11 Total: -56.32 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.14 kcal Total: -91.50 -2.23 -93.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753378453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.875 kcal (2) G-P(sol) polarization free energy of solvation -91.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds