Wall clock time and date at job start Wed Apr 1 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99710 * 2 1 4 4 C 1.38457 * 119.99813 * 180.02562 * 2 1 3 5 5 C 1.39401 * 119.54128 * 4.97426 * 4 2 1 6 6 C 1.36856 * 119.37813 * 180.02562 * 5 4 2 7 7 C 1.40351 * 118.49046 * 0.02562 * 6 5 4 8 8 C 1.47544 * 120.47067 * 180.02562 * 7 6 5 9 9 O 1.21597 * 120.00088 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99934 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00197 * 180.02562 * 10 8 7 12 12 C 1.53933 * 113.73002 * 253.76704 * 11 10 8 13 13 N 1.48188 * 86.10135 * 221.95306 * 12 11 10 14 14 C 1.46901 * 111.07229 * 137.51702 * 13 12 11 15 15 C 1.50706 * 109.46780 * 70.57190 * 14 13 12 16 16 O 1.21290 * 120.00187 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99724 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00046 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99483 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00045 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99819 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 90.00043 * 22 20 18 24 24 H 1.48493 * 109.47283 * 210.00146 * 22 20 18 25 25 H 1.48500 * 109.47200 * 330.00043 * 22 20 18 26 26 C 1.47961 * 90.79621 * 24.60213 * 13 12 11 27 27 C 1.39548 * 119.05428 * 359.97438 * 7 6 5 28 28 N 1.31684 * 120.52015 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.47337 * 269.99855 * 1 2 3 30 30 H 1.08999 * 109.47343 * 29.99762 * 1 2 3 31 31 H 1.08997 * 109.47273 * 149.99890 * 1 2 3 32 32 H 1.08994 * 109.47127 * 269.99558 * 3 2 1 33 33 H 1.08997 * 109.47761 * 30.00216 * 3 2 1 34 34 H 1.09003 * 109.46530 * 150.00365 * 3 2 1 35 35 H 1.07997 * 120.30625 * 0.04906 * 5 4 2 36 36 H 1.08000 * 120.75185 * 179.97438 * 6 5 4 37 37 H 0.97002 * 120.00480 * 0.02562 * 10 8 7 38 38 H 1.09002 * 112.93815 * 25.32861 * 11 10 8 39 39 H 1.08996 * 113.76226 * 336.23418 * 12 11 10 40 40 H 1.08998 * 113.76109 * 107.60220 * 12 11 10 41 41 H 1.08995 * 109.47301 * 190.56692 * 14 13 12 42 42 H 1.08997 * 109.47779 * 310.57220 * 14 13 12 43 43 H 0.97002 * 120.00508 * 359.97438 * 17 15 14 44 44 H 0.97001 * 120.00463 * 180.02562 * 21 20 18 45 45 H 1.09007 * 113.75812 * 221.08707 * 26 13 12 46 46 H 1.08999 * 113.86095 * 89.73543 * 26 13 12 47 47 H 1.08001 * 119.74544 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1573 -1.1991 -0.0005 5 6 1.4545 -2.3984 -0.1062 6 6 2.1421 -3.5817 -0.1059 7 6 3.5409 -3.5432 0.0023 8 6 4.3257 -4.7926 0.0066 9 8 3.7609 -5.8656 -0.0836 10 7 5.6685 -4.7445 0.1105 11 6 6.4479 -5.9851 0.1141 12 6 7.0076 -6.3609 1.4980 13 7 8.2553 -6.7200 0.7837 14 6 9.4378 -6.2471 1.5159 15 6 9.6116 -7.0638 2.7705 16 8 8.8273 -7.9521 3.0294 17 7 10.6380 -6.8065 3.6052 18 6 10.7959 -7.5491 4.7468 19 1 10.0975 -8.3400 4.9773 20 6 11.8543 -7.2841 5.6072 21 7 12.7043 -6.3222 5.3264 22 14 12.0690 -8.2955 7.1630 23 1 12.9246 -9.4742 6.8730 24 1 12.7125 -7.4623 8.2102 25 1 10.7405 -8.7542 7.6424 26 6 7.9124 -5.7981 -0.3215 27 6 4.1789 -2.3063 0.1047 28 7 3.4794 -1.1906 0.1005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.3792 1.5833 -1.0276 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.3777 -2.3936 -0.1880 36 1 1.6201 -4.5237 -0.1862 37 1 6.1191 -3.8886 0.1828 38 1 5.9410 -6.8067 -0.3920 39 1 7.1167 -5.5121 2.1729 40 1 6.5043 -7.2106 1.9593 41 1 10.3215 -6.3546 0.8871 42 1 9.3058 -5.1980 1.7807 43 1 11.2650 -6.0959 3.3984 44 1 13.4434 -6.1374 5.9268 45 1 8.1306 -6.1989 -1.3115 46 1 8.2861 -4.7838 -0.1817 47 1 5.2548 -2.2637 0.1890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753381282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:28 Heat of formation + Delta-G solvation = 27.599354 kcal Electronic energy + Delta-G solvation = -29006.376899 eV Core-core repulsion = 24805.186573 eV Total energy + Delta-G solvation = -4201.190326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.03523 -40.22712 -38.89094 -37.61844 -36.85467 -34.23030 -33.79693 -32.93090 -31.34797 -31.09427 -29.52188 -28.76426 -26.43290 -25.98463 -25.30064 -23.75022 -23.63523 -22.33228 -20.71487 -20.18089 -19.19332 -18.32592 -17.89362 -17.52868 -17.09588 -16.27372 -16.09214 -15.88290 -15.44398 -15.26946 -15.08975 -14.93007 -14.55303 -14.41445 -14.05872 -13.86071 -13.61638 -13.49876 -13.27681 -13.16988 -12.95863 -12.81348 -12.64807 -12.50895 -12.36209 -12.05828 -11.70709 -11.51766 -11.23681 -11.05875 -10.56680 -10.47180 -10.38351 -10.31816 -10.21654 -10.20067 -9.69906 -9.49480 -9.13504 -8.68650 -8.23481 -8.05519 -7.95222 -6.40807 -3.81437 0.55393 0.99188 2.38122 2.74100 2.97544 3.18975 3.27486 3.33657 3.64410 3.90147 3.95096 4.04098 4.21694 4.40060 4.50521 4.54078 4.57202 4.68966 4.70466 4.82556 4.89749 4.90844 5.00146 5.09455 5.14480 5.22045 5.26769 5.31668 5.41404 5.47582 5.54539 5.67376 5.69121 5.78669 5.85296 6.00161 6.05148 6.21119 6.30054 6.34388 6.41485 6.61413 6.79754 7.15644 7.36672 7.56339 7.62395 8.06806 8.10959 8.62452 9.19174 9.55016 10.06947 10.76981 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.001767 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.846781 B =15841.184248 C =16652.588131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.610 5.610 3 C 0.094 3.906 4 C 0.420 3.580 5 C -0.248 4.248 6 C 0.027 3.973 7 C -0.252 4.252 8 C 0.572 3.428 9 O -0.539 6.539 10 N -0.719 5.719 11 C 0.116 3.884 12 C 0.010 3.990 13 N -0.449 5.449 14 C 0.013 3.987 15 C 0.443 3.557 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.009 4.009 27 C 0.191 3.809 28 N -0.546 5.546 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.397 0.603 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.054 0.946 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.936 17.864 -14.495 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.322 5.322 3 C -0.048 4.048 4 C 0.185 3.815 5 C -0.272 4.272 6 C 0.001 3.999 7 C -0.260 4.260 8 C 0.359 3.641 9 O -0.416 6.416 10 N -0.370 5.370 11 C 0.011 3.989 12 C -0.119 4.119 13 N -0.172 5.172 14 C -0.119 4.119 15 C 0.228 3.772 16 O -0.460 6.460 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.139 4.139 27 C 0.030 3.970 28 N -0.263 5.263 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.233 0.767 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.090 0.910 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.233 16.857 -14.328 30.664 hybrid contribution 0.509 0.642 0.948 1.253 sum -20.723 17.499 -13.380 30.244 Atomic orbital electron populations 1.21810 0.78100 1.03391 1.02017 1.46225 1.05493 1.03376 1.77101 1.21652 0.97919 0.83672 1.01604 1.18520 0.88570 0.86034 0.88369 1.21168 1.01422 0.91443 1.13193 1.21165 0.92434 0.98592 0.87727 1.20617 0.95224 0.94335 1.15836 1.17954 0.81961 0.88445 0.75723 1.90789 1.70461 1.30498 1.49890 1.45967 1.06400 1.09669 1.74970 1.23143 0.90278 0.87475 0.97986 1.24346 0.91155 1.01156 0.95288 1.68420 1.01125 1.41848 1.05829 1.22447 0.95802 0.97264 0.96382 1.19680 0.84451 0.87530 0.85539 1.90535 1.45450 1.34268 1.75791 1.41861 1.24975 1.32852 1.20471 1.19706 1.11074 1.14481 0.97524 0.87926 1.25252 0.95738 0.97197 0.99763 1.69607 1.15614 1.30546 1.38632 0.85858 0.78671 0.79150 0.80622 1.20379 1.20958 1.19434 1.24430 0.93809 0.96887 0.98725 1.22624 0.99336 0.86090 0.88905 1.67217 1.05953 1.31285 1.21876 0.92480 0.90707 0.90693 0.93120 0.91618 0.89839 0.84360 0.83652 0.76745 0.85744 0.91272 0.88184 0.88982 0.92810 0.77522 0.91903 0.88515 0.91024 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.33 10.27 59.85 0.61 0.94 16 2 N -0.61 -4.15 3.37 -189.71 -0.64 -4.80 16 3 C 0.09 0.52 10.49 59.85 0.63 1.15 16 4 C 0.42 3.80 7.36 -155.28 -1.14 2.65 16 5 C -0.25 -2.02 9.20 -39.65 -0.36 -2.39 16 6 C 0.03 0.26 9.65 -39.29 -0.38 -0.12 16 7 C -0.25 -2.63 5.89 -104.82 -0.62 -3.25 16 8 C 0.57 7.15 7.77 -12.47 -0.10 7.06 16 9 O -0.54 -8.73 16.03 5.28 0.08 -8.64 16 10 N -0.72 -7.64 5.32 -55.99 -0.30 -7.94 16 11 C 0.12 1.48 4.39 -69.63 -0.31 1.18 16 12 C 0.01 0.17 6.58 -2.63 -0.02 0.15 16 13 N -0.45 -7.46 5.95 -239.69 -1.43 -8.89 16 14 C 0.01 0.23 5.31 -4.97 -0.03 0.21 16 15 C 0.44 10.57 7.59 -10.98 -0.08 10.49 16 16 O -0.58 -15.91 15.13 5.55 0.08 -15.83 16 17 N -0.56 -14.41 5.29 -10.96 -0.06 -14.46 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 22 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.01 -0.10 7.72 -2.76 -0.02 -0.12 16 27 C 0.19 1.74 10.71 -17.13 -0.18 1.56 16 28 N -0.55 -5.42 9.04 -12.14 -0.11 -5.53 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.15 8.07 -51.93 -0.42 -0.27 16 31 H 0.07 0.22 5.95 -51.93 -0.31 -0.09 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.08 0.57 7.28 -51.93 -0.38 0.20 16 35 H 0.14 0.77 5.99 -52.49 -0.31 0.46 16 36 H 0.15 1.34 7.73 -52.49 -0.41 0.94 16 37 H 0.40 3.06 6.76 -40.82 -0.28 2.79 16 38 H 0.12 1.77 7.51 -51.93 -0.39 1.38 16 39 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 40 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.05 0.83 7.70 -51.93 -0.40 0.43 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 46 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 47 H 0.16 1.01 6.41 -52.49 -0.34 0.67 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -36.11 393.22 -9.37 -45.49 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.40 Total: 10.88 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -2.24 Total: 11.45 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -1.81 Total: -65.52 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.17 Total: -24.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.11 -9.37 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.085 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds