Wall clock time and date at job start Wed Apr 1 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99710 * 2 1 4 4 C 1.38457 * 119.99813 * 180.02562 * 2 1 3 5 5 C 1.39401 * 119.54128 * 4.97426 * 4 2 1 6 6 C 1.36856 * 119.37813 * 180.02562 * 5 4 2 7 7 C 1.40351 * 118.49046 * 0.02562 * 6 5 4 8 8 C 1.47544 * 120.47067 * 180.02562 * 7 6 5 9 9 O 1.21597 * 120.00088 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99934 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00197 * 180.02562 * 10 8 7 12 12 C 1.53933 * 113.73002 * 253.76704 * 11 10 8 13 13 N 1.48188 * 86.10135 * 221.95306 * 12 11 10 14 14 C 1.46901 * 111.07229 * 137.51702 * 13 12 11 15 15 C 1.50706 * 109.46780 * 70.57190 * 14 13 12 16 16 O 1.21290 * 120.00187 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99724 * 180.02562 * 15 14 13 18 18 C 1.37101 * 120.00046 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99483 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00045 * 179.97438 * 18 17 15 21 21 N 1.31404 * 120.00255 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99819 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 90.00043 * 22 20 18 24 24 H 1.48493 * 109.47283 * 210.00146 * 22 20 18 25 25 H 1.48500 * 109.47200 * 330.00043 * 22 20 18 26 26 C 1.47961 * 90.79621 * 24.60213 * 13 12 11 27 27 C 1.39548 * 119.05428 * 359.97438 * 7 6 5 28 28 N 1.31684 * 120.52015 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.47337 * 269.99855 * 1 2 3 30 30 H 1.08999 * 109.47343 * 29.99762 * 1 2 3 31 31 H 1.08997 * 109.47273 * 149.99890 * 1 2 3 32 32 H 1.08994 * 109.47127 * 269.99558 * 3 2 1 33 33 H 1.08997 * 109.47761 * 30.00216 * 3 2 1 34 34 H 1.09003 * 109.46530 * 150.00365 * 3 2 1 35 35 H 1.07997 * 120.30625 * 0.04906 * 5 4 2 36 36 H 1.08000 * 120.75185 * 179.97438 * 6 5 4 37 37 H 0.97002 * 120.00480 * 0.02562 * 10 8 7 38 38 H 1.09002 * 112.93815 * 25.32861 * 11 10 8 39 39 H 1.08996 * 113.76226 * 336.23418 * 12 11 10 40 40 H 1.08998 * 113.76109 * 107.60220 * 12 11 10 41 41 H 1.08995 * 109.47301 * 190.56692 * 14 13 12 42 42 H 1.08997 * 109.47779 * 310.57220 * 14 13 12 43 43 H 0.97002 * 120.00508 * 359.97438 * 17 15 14 44 44 H 0.97001 * 120.00463 * 180.02562 * 21 20 18 45 45 H 1.09007 * 113.75812 * 221.08707 * 26 13 12 46 46 H 1.08999 * 113.86095 * 89.73543 * 26 13 12 47 47 H 1.08001 * 119.74544 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1573 -1.1991 -0.0005 5 6 1.4545 -2.3984 -0.1062 6 6 2.1421 -3.5817 -0.1059 7 6 3.5409 -3.5432 0.0023 8 6 4.3257 -4.7926 0.0066 9 8 3.7609 -5.8656 -0.0836 10 7 5.6685 -4.7445 0.1105 11 6 6.4479 -5.9851 0.1141 12 6 7.0076 -6.3609 1.4980 13 7 8.2553 -6.7200 0.7837 14 6 9.4378 -6.2471 1.5159 15 6 9.6116 -7.0638 2.7705 16 8 8.8273 -7.9521 3.0294 17 7 10.6380 -6.8065 3.6052 18 6 10.7959 -7.5491 4.7468 19 1 10.0975 -8.3400 4.9773 20 6 11.8543 -7.2841 5.6072 21 7 12.7043 -6.3222 5.3264 22 14 12.0690 -8.2955 7.1630 23 1 12.9246 -9.4742 6.8730 24 1 12.7125 -7.4623 8.2102 25 1 10.7405 -8.7542 7.6424 26 6 7.9124 -5.7981 -0.3215 27 6 4.1789 -2.3063 0.1047 28 7 3.4794 -1.1906 0.1005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.3792 1.5833 -1.0276 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.3777 -2.3936 -0.1880 36 1 1.6201 -4.5237 -0.1862 37 1 6.1191 -3.8886 0.1828 38 1 5.9410 -6.8067 -0.3920 39 1 7.1167 -5.5121 2.1729 40 1 6.5043 -7.2106 1.9593 41 1 10.3215 -6.3546 0.8871 42 1 9.3058 -5.1980 1.7807 43 1 11.2650 -6.0959 3.3984 44 1 13.4434 -6.1374 5.9268 45 1 8.1306 -6.1989 -1.3115 46 1 8.2861 -4.7838 -0.1817 47 1 5.2548 -2.2637 0.1890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753381282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:27 Heat of formation + Delta-G solvation = -1.332607 kcal Electronic energy + Delta-G solvation = -29007.631483 eV Core-core repulsion = 24805.186573 eV Total energy + Delta-G solvation = -4202.444910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.86777 -41.26494 -40.09988 -39.25926 -37.43915 -35.97902 -35.14832 -33.61841 -33.30432 -32.01588 -30.73698 -29.14265 -27.51727 -27.10298 -26.70444 -25.00346 -24.38661 -23.13110 -21.60622 -21.31769 -20.92572 -19.89534 -19.07426 -18.25841 -17.97178 -17.79713 -17.16995 -16.62838 -16.56305 -16.42917 -16.18118 -16.07371 -15.76421 -15.54150 -15.44552 -15.03938 -14.85504 -14.35721 -14.27264 -14.04073 -13.76543 -13.66191 -13.52934 -13.49128 -13.37618 -13.12965 -13.05013 -12.85562 -12.76237 -12.44517 -12.36766 -12.13984 -11.78578 -11.50620 -11.27947 -11.12396 -10.86103 -10.45931 -10.34139 -10.16123 -10.01636 -9.72708 -8.62506 -8.47368 -5.95762 -0.17610 0.31998 1.36923 1.40676 1.53170 1.85448 1.90260 2.03215 2.05713 2.29179 2.86494 2.90786 3.19184 3.23206 3.38000 3.58651 3.74071 3.82923 3.87138 3.94063 4.09680 4.14575 4.29027 4.30543 4.38892 4.44851 4.45536 4.50775 4.55560 4.63998 4.71698 4.78439 4.85064 4.87295 4.92710 4.98560 4.99026 5.20467 5.34550 5.38889 5.40897 5.45061 5.87088 5.87553 6.06062 6.22410 6.50478 6.60234 6.97740 7.12688 7.19925 7.55857 8.12551 8.69947 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.001767 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.846781 B =15841.184248 C =16652.588131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.092 3.908 4 C 0.410 3.590 5 C -0.245 4.245 6 C 0.016 3.984 7 C -0.271 4.271 8 C 0.571 3.429 9 O -0.585 6.585 10 N -0.703 5.703 11 C 0.131 3.869 12 C 0.004 3.996 13 N -0.480 5.480 14 C 0.026 3.974 15 C 0.437 3.563 16 O -0.621 6.621 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.276 1.276 26 C 0.011 3.989 27 C 0.197 3.803 28 N -0.563 5.563 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.950 20.520 -15.337 33.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.320 5.320 3 C -0.051 4.051 4 C 0.174 3.826 5 C -0.269 4.269 6 C -0.010 4.010 7 C -0.279 4.279 8 C 0.361 3.639 9 O -0.466 6.466 10 N -0.355 5.355 11 C 0.025 3.975 12 C -0.126 4.126 13 N -0.204 5.204 14 C -0.105 4.105 15 C 0.225 3.775 16 O -0.507 6.507 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.093 0.907 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.193 1.193 25 H -0.201 1.201 26 C -0.118 4.118 27 C 0.036 3.964 28 N -0.281 5.281 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.181 0.819 36 H 0.159 0.841 37 H 0.253 0.747 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.103 0.897 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.124 0.876 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.238 19.597 -15.193 32.649 hybrid contribution 0.411 -0.087 1.186 1.258 sum -20.828 19.510 -14.007 31.791 Atomic orbital electron populations 1.22055 0.76236 1.04819 1.02878 1.46574 1.06783 1.03016 1.75637 1.21736 0.97673 0.83672 1.02006 1.18866 0.88670 0.87151 0.87954 1.21358 1.02583 0.90573 1.12388 1.21268 0.92484 0.99149 0.88121 1.20494 0.95451 0.93786 1.18210 1.18302 0.82348 0.88555 0.74713 1.90764 1.71362 1.32251 1.52208 1.45761 1.05850 1.09781 1.74140 1.22776 0.91371 0.87920 0.95482 1.24277 0.91699 0.99711 0.96908 1.68383 1.00555 1.44325 1.07109 1.22359 0.97354 0.97328 0.93472 1.20851 0.82818 0.87120 0.86753 1.90510 1.46715 1.36359 1.77157 1.41917 1.25788 1.32970 1.20370 1.19631 1.11803 1.15332 0.99618 0.90664 1.25995 0.94914 0.98039 1.02166 1.69656 1.15709 1.30979 1.39574 0.84959 0.78305 0.78021 0.77234 1.19651 1.19333 1.20055 1.24495 0.91714 0.97825 0.97752 1.22943 1.00434 0.85316 0.87669 1.67300 1.06597 1.31409 1.22807 0.91821 0.88709 0.89930 0.92654 0.89407 0.91349 0.81945 0.84054 0.74685 0.87512 0.90941 0.92320 0.86691 0.89743 0.76881 0.91265 0.86593 0.87563 0.80064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 10.27 127.77 1.31 1.69 16 2 N -0.61 -7.01 3.37 -754.11 -2.55 -9.56 16 3 C 0.09 0.83 10.49 127.77 1.34 2.17 16 4 C 0.41 6.79 7.36 133.25 0.98 7.77 16 5 C -0.24 -3.70 9.20 22.23 0.20 -3.50 16 6 C 0.02 0.30 9.65 22.46 0.22 0.52 16 7 C -0.27 -5.57 5.89 -19.99 -0.12 -5.69 16 8 C 0.57 14.38 7.77 86.70 0.67 15.05 16 9 O -0.58 -19.76 16.03 -4.02 -0.06 -19.83 16 10 N -0.70 -14.16 5.32 -449.30 -2.39 -16.56 16 11 C 0.13 3.26 4.39 46.55 0.20 3.46 16 12 C 0.00 0.14 6.58 86.37 0.57 0.71 16 13 N -0.48 -15.48 5.95 -912.24 -5.42 -20.90 16 14 C 0.03 0.89 5.31 85.56 0.45 1.34 16 15 C 0.44 21.15 7.59 87.66 0.67 21.81 16 16 O -0.62 -35.64 15.13 -3.06 -0.05 -35.69 16 17 N -0.57 -29.63 5.29 -306.98 -1.62 -31.25 16 18 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 22 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 26 C 0.01 0.22 7.72 86.41 0.67 0.89 16 27 C 0.20 3.33 10.71 85.03 0.91 4.24 16 28 N -0.56 -10.41 9.04 -192.33 -1.74 -12.14 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.09 0.08 8.07 -2.39 -0.02 0.06 16 31 H 0.08 0.26 5.95 -2.39 -0.01 0.25 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 34 H 0.07 0.85 7.28 -2.39 -0.02 0.83 16 35 H 0.16 1.50 5.99 -2.91 -0.02 1.49 16 36 H 0.14 2.73 7.73 -2.91 -0.02 2.71 16 37 H 0.41 5.35 6.76 -92.71 -0.63 4.73 16 38 H 0.11 3.11 7.51 -2.39 -0.02 3.09 16 39 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 40 H 0.06 2.38 8.10 -2.39 -0.02 2.36 16 41 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.08 2.33 7.70 -2.39 -0.02 2.31 16 43 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 44 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.11 1.50 7.77 -2.39 -0.02 1.48 16 47 H 0.18 1.90 6.41 -2.91 -0.02 1.88 16 Total: -1.00 -81.87 393.22 -2.49 -84.36 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.33 Total: 33.41 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 9.36 Total: 31.85 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -13.44 Total: -139.69 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.11 Total: -55.52 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -81.87 -2.49 -84.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.024 kcal (2) G-P(sol) polarization free energy of solvation -81.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds