Wall clock time and date at job start Wed Apr 1 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00336 * 2 1 4 4 C 1.53007 * 109.47045 * 293.95523 * 3 2 1 5 5 N 1.46505 * 109.46828 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99887 * 269.99861 * 5 4 3 7 7 C 1.34775 * 119.99805 * 89.99942 * 5 4 3 8 8 O 1.21277 * 120.00145 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99857 * 179.97438 * 7 5 4 10 10 H 1.08997 * 110.42847 * 57.46458 * 9 7 5 11 11 C 1.54266 * 110.48525 * 180.02562 * 9 7 5 12 12 C 1.53867 * 106.59916 * 142.29058 * 11 9 7 13 13 C 1.54266 * 106.59914 * 359.97438 * 12 11 9 14 14 F 1.39905 * 110.48641 * 95.06888 * 13 12 11 15 15 F 1.39902 * 110.48987 * 217.57821 * 13 12 11 16 16 C 1.54891 * 104.31470 * 336.32440 * 13 12 11 17 17 C 1.46904 * 110.99891 * 123.95314 * 2 1 3 18 18 C 1.50702 * 109.46840 * 66.04762 * 17 2 1 19 19 O 1.21290 * 120.00260 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99765 * 179.97438 * 18 17 2 21 21 C 1.37098 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99683 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99912 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00266 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99754 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47161 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46966 * 119.99575 * 25 23 21 28 28 H 1.48503 * 109.47026 * 239.99526 * 25 23 21 29 29 H 1.09002 * 109.46637 * 60.00120 * 1 2 3 30 30 H 1.08996 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46838 * 300.00229 * 1 2 3 32 32 H 1.08995 * 109.47648 * 173.95007 * 3 2 1 33 33 H 1.09006 * 109.47252 * 53.95002 * 3 2 1 34 34 H 1.09004 * 109.46958 * 59.99777 * 4 3 2 35 35 H 1.08997 * 109.46645 * 299.99594 * 4 3 2 36 36 H 1.09006 * 109.46999 * 269.99909 * 6 5 4 37 37 H 1.08993 * 109.47621 * 30.00192 * 6 5 4 38 38 H 1.08998 * 109.46775 * 150.00604 * 6 5 4 39 39 H 1.08999 * 110.03060 * 23.00156 * 11 9 7 40 40 H 1.09000 * 110.07079 * 261.59911 * 11 9 7 41 41 H 1.09001 * 110.03344 * 240.71511 * 12 11 9 42 42 H 1.08996 * 110.07527 * 119.30580 * 12 11 9 43 43 H 1.08990 * 110.75966 * 156.31853 * 16 13 12 44 44 H 1.09005 * 110.75413 * 279.69462 * 16 13 12 45 45 H 1.08997 * 109.47147 * 186.04666 * 17 2 1 46 46 H 1.08998 * 109.46901 * 306.04578 * 17 2 1 47 47 H 0.96997 * 120.00198 * 0.02562 * 20 18 17 48 48 H 0.97006 * 120.00177 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1561 3.4253 -1.3180 6 6 1.3357 4.5243 -0.8029 7 6 3.3935 3.6726 -1.7916 8 8 4.0724 2.7629 -2.2185 9 6 3.9329 5.0798 -1.7918 10 1 3.9265 5.4899 -0.7820 11 6 5.3592 5.1111 -2.3788 12 6 5.4664 6.4050 -3.2046 13 6 4.1012 7.1145 -3.0913 14 9 4.1273 8.0654 -2.0654 15 9 3.7600 7.7168 -4.3070 16 6 3.1058 5.9775 -2.7513 17 6 1.9955 -0.7660 1.1376 18 6 1.6369 -2.2204 0.9728 19 8 1.0047 -2.5831 0.0034 20 7 2.0188 -3.1181 1.9027 21 6 1.6923 -4.4412 1.7531 22 1 1.1293 -4.7641 0.8899 23 6 2.0856 -5.3666 2.7120 24 7 2.7710 -4.9737 3.7621 25 14 1.6411 -7.1695 2.5078 26 1 0.8730 -7.3505 1.2499 27 1 2.8829 -7.9821 2.4513 28 1 0.8139 -7.6090 3.6601 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0798 1.3444 0.1083 33 1 1.5612 1.9274 0.8309 34 1 0.5472 2.0845 -1.4265 35 1 2.0659 1.5015 -2.1491 36 1 0.7429 4.9465 -1.6145 37 1 0.6713 4.1482 -0.0251 38 1 1.9827 5.2962 -0.3861 39 1 5.5181 4.2444 -3.0203 40 1 6.0946 5.1196 -1.5743 41 1 5.6772 6.1662 -4.2470 42 1 6.2533 7.0422 -2.8012 43 1 2.2236 6.3739 -2.2488 44 1 2.8256 5.4279 -3.6500 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5242 -2.8280 2.6782 48 1 3.0459 -5.6199 4.4314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753854506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:56 Heat of formation + Delta-G solvation = -163.740048 kcal Electronic energy + Delta-G solvation = -30679.360329 eV Core-core repulsion = 26019.183718 eV Total energy + Delta-G solvation = -4660.176611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.33611 -47.45953 -40.62479 -38.65289 -37.35495 -36.58754 -35.55128 -33.83394 -31.25663 -30.88021 -29.29260 -28.58531 -27.76990 -26.94989 -25.41127 -24.15030 -22.35973 -21.59843 -20.92368 -19.44850 -19.11545 -18.31352 -17.82965 -17.36215 -17.20308 -16.61318 -16.37604 -16.03268 -15.55624 -15.20551 -15.04642 -14.79284 -14.59772 -14.52698 -14.03731 -13.92034 -13.79155 -13.68420 -13.51192 -13.40628 -13.37257 -12.97689 -12.74996 -12.62276 -12.49358 -12.11481 -12.08392 -12.02172 -11.88829 -11.50467 -11.30393 -11.27991 -11.20374 -11.16849 -10.94099 -10.83255 -10.33064 -10.21256 -10.06236 -9.47389 -9.04397 -8.42042 -7.96649 -7.85496 -6.40313 -3.80962 2.25057 2.57198 3.17325 3.19499 3.27789 3.31109 3.35155 3.61524 3.83560 3.92135 4.05899 4.22438 4.29426 4.41998 4.56351 4.57626 4.68799 4.77097 4.82195 4.88241 4.96048 4.97991 5.09506 5.16021 5.23051 5.26633 5.32186 5.35645 5.43213 5.57001 5.62932 5.66689 5.72692 5.80259 5.88130 5.95851 6.02116 6.21680 6.30137 6.52707 7.02222 7.24374 7.38233 7.56915 7.85399 8.08247 8.63499 9.19801 9.56202 10.08045 10.77557 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.001685 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.427954 B =16615.580241 C =16971.439038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.043 3.957 4 C 0.118 3.882 5 N -0.614 5.614 6 C 0.073 3.927 7 C 0.520 3.480 8 O -0.522 6.522 9 C -0.113 4.113 10 H 0.111 0.889 11 C -0.111 4.111 12 C -0.161 4.161 13 C 0.280 3.720 14 F -0.193 7.193 15 F -0.196 7.196 16 C -0.150 4.150 17 C 0.048 3.952 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 27.724 -8.455 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.240 5.240 3 C -0.086 4.086 4 C -0.004 4.004 5 N -0.347 5.347 6 C -0.071 4.071 7 C 0.307 3.693 8 O -0.397 6.397 9 C -0.134 4.134 10 H 0.129 0.871 11 C -0.148 4.148 12 C -0.199 4.199 13 C 0.243 3.757 14 F -0.174 7.174 15 F -0.177 7.177 16 C -0.188 4.188 17 C -0.084 4.084 18 C 0.230 3.770 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.584 26.671 -9.622 28.398 hybrid contribution -0.242 0.019 1.434 1.454 sum 1.342 26.691 -8.188 27.950 Atomic orbital electron populations 1.22601 0.86826 1.04650 0.98737 1.61455 1.08564 1.10896 1.43066 1.22428 1.00845 0.89080 0.96248 1.21516 0.99038 0.80548 0.99344 1.47829 1.15627 1.08805 1.62463 1.21952 0.95777 0.89826 0.99508 1.20258 0.81171 0.90413 0.77458 1.90756 1.57039 1.46168 1.45771 1.22166 0.96550 0.93281 1.01422 0.87081 1.22067 0.94626 0.97686 1.00452 1.23165 0.94840 0.97799 1.04072 1.21890 0.97717 0.83625 0.72434 1.93024 1.97462 1.67504 1.59449 1.93022 1.93630 1.85763 1.45267 1.23572 0.98111 0.95060 1.02076 1.21855 1.00731 0.94154 0.91618 1.19715 0.85415 0.86613 0.85217 1.90481 1.43892 1.80133 1.31581 1.41872 1.49445 1.07381 1.21480 1.19750 1.32774 0.82275 1.07877 0.87837 1.25265 0.96869 1.00576 0.95338 1.69623 1.38136 1.35641 1.10980 0.85800 0.78199 0.81949 0.78389 1.19216 1.20757 1.20819 0.92153 0.88443 0.96809 0.90604 0.95264 0.90218 0.88541 0.92188 0.90627 0.90860 0.88263 0.89900 0.88208 0.88766 0.88059 0.87582 0.89402 0.93515 0.77513 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.07 0.54 0.85 16 2 N -0.52 -8.68 4.50 -244.37 -1.10 -9.78 16 3 C 0.04 0.57 5.28 -3.82 -0.02 0.55 16 4 C 0.12 1.34 5.33 -4.04 -0.02 1.31 16 5 N -0.61 -5.49 2.87 -181.56 -0.52 -6.01 16 6 C 0.07 0.38 8.98 59.85 0.54 0.91 16 7 C 0.52 5.26 7.04 -10.98 -0.08 5.19 16 8 O -0.52 -7.52 15.00 5.56 0.08 -7.43 16 9 C -0.11 -0.75 2.32 -89.91 -0.21 -0.96 16 10 H 0.11 0.58 7.30 -51.93 -0.38 0.20 16 11 C -0.11 -0.74 6.19 -25.62 -0.16 -0.90 16 12 C -0.16 -0.91 6.41 -25.62 -0.16 -1.07 16 13 C 0.28 1.90 2.48 -25.07 -0.06 1.84 16 14 F -0.19 -1.53 17.17 2.25 0.04 -1.49 16 15 F -0.20 -1.66 17.16 2.25 0.04 -1.62 16 16 C -0.15 -0.85 5.17 -24.53 -0.13 -0.98 16 17 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 18 C 0.45 10.62 7.47 -10.99 -0.08 10.54 16 19 O -0.58 -15.60 13.91 5.55 0.08 -15.52 16 20 N -0.57 -14.46 5.29 -10.97 -0.06 -14.52 16 21 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 25 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 30 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.78 6.48 -51.93 -0.34 0.45 16 35 H 0.10 1.35 7.42 -51.93 -0.39 0.96 16 36 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 37 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.07 0.27 6.02 -51.93 -0.31 -0.04 16 39 H 0.10 0.84 6.85 -51.93 -0.36 0.49 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 42 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.10 0.42 6.46 -51.93 -0.34 0.08 16 44 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 46 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -33.84 390.68 -7.13 -40.97 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.17 Total: 7.23 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.11 Total: 10.11 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.96 Total: -54.29 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.16 Total: -22.95 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.84 -7.13 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753854506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.770 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds