Wall clock time and date at job start Wed Apr 1 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00336 * 2 1 4 4 C 1.53007 * 109.47045 * 293.95523 * 3 2 1 5 5 N 1.46505 * 109.46828 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99887 * 269.99861 * 5 4 3 7 7 C 1.34775 * 119.99805 * 89.99942 * 5 4 3 8 8 O 1.21277 * 120.00145 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99857 * 179.97438 * 7 5 4 10 10 H 1.08997 * 110.42847 * 57.46458 * 9 7 5 11 11 C 1.54266 * 110.48525 * 180.02562 * 9 7 5 12 12 C 1.53867 * 106.59916 * 142.29058 * 11 9 7 13 13 C 1.54266 * 106.59914 * 359.97438 * 12 11 9 14 14 F 1.39905 * 110.48641 * 95.06888 * 13 12 11 15 15 F 1.39902 * 110.48987 * 217.57821 * 13 12 11 16 16 C 1.54891 * 104.31470 * 336.32440 * 13 12 11 17 17 C 1.46904 * 110.99891 * 123.95314 * 2 1 3 18 18 C 1.50702 * 109.46840 * 66.04762 * 17 2 1 19 19 O 1.21290 * 120.00260 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99765 * 179.97438 * 18 17 2 21 21 C 1.37098 * 120.00038 * 179.97438 * 20 18 17 22 22 H 1.07996 * 119.99683 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99912 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00266 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99754 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47161 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.46966 * 119.99575 * 25 23 21 28 28 H 1.48503 * 109.47026 * 239.99526 * 25 23 21 29 29 H 1.09002 * 109.46637 * 60.00120 * 1 2 3 30 30 H 1.08996 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46838 * 300.00229 * 1 2 3 32 32 H 1.08995 * 109.47648 * 173.95007 * 3 2 1 33 33 H 1.09006 * 109.47252 * 53.95002 * 3 2 1 34 34 H 1.09004 * 109.46958 * 59.99777 * 4 3 2 35 35 H 1.08997 * 109.46645 * 299.99594 * 4 3 2 36 36 H 1.09006 * 109.46999 * 269.99909 * 6 5 4 37 37 H 1.08993 * 109.47621 * 30.00192 * 6 5 4 38 38 H 1.08998 * 109.46775 * 150.00604 * 6 5 4 39 39 H 1.08999 * 110.03060 * 23.00156 * 11 9 7 40 40 H 1.09000 * 110.07079 * 261.59911 * 11 9 7 41 41 H 1.09001 * 110.03344 * 240.71511 * 12 11 9 42 42 H 1.08996 * 110.07527 * 119.30580 * 12 11 9 43 43 H 1.08990 * 110.75966 * 156.31853 * 16 13 12 44 44 H 1.09005 * 110.75413 * 279.69462 * 16 13 12 45 45 H 1.08997 * 109.47147 * 186.04666 * 17 2 1 46 46 H 1.08998 * 109.46901 * 306.04578 * 17 2 1 47 47 H 0.96997 * 120.00198 * 0.02562 * 20 18 17 48 48 H 0.97006 * 120.00177 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1561 3.4253 -1.3180 6 6 1.3357 4.5243 -0.8029 7 6 3.3935 3.6726 -1.7916 8 8 4.0724 2.7629 -2.2185 9 6 3.9329 5.0798 -1.7918 10 1 3.9265 5.4899 -0.7820 11 6 5.3592 5.1111 -2.3788 12 6 5.4664 6.4050 -3.2046 13 6 4.1012 7.1145 -3.0913 14 9 4.1273 8.0654 -2.0654 15 9 3.7600 7.7168 -4.3070 16 6 3.1058 5.9775 -2.7513 17 6 1.9955 -0.7660 1.1376 18 6 1.6369 -2.2204 0.9728 19 8 1.0047 -2.5831 0.0034 20 7 2.0188 -3.1181 1.9027 21 6 1.6923 -4.4412 1.7531 22 1 1.1293 -4.7641 0.8899 23 6 2.0856 -5.3666 2.7120 24 7 2.7710 -4.9737 3.7621 25 14 1.6411 -7.1695 2.5078 26 1 0.8730 -7.3505 1.2499 27 1 2.8829 -7.9821 2.4513 28 1 0.8139 -7.6090 3.6601 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.0798 1.3444 0.1083 33 1 1.5612 1.9274 0.8309 34 1 0.5472 2.0845 -1.4265 35 1 2.0659 1.5015 -2.1491 36 1 0.7429 4.9465 -1.6145 37 1 0.6713 4.1482 -0.0251 38 1 1.9827 5.2962 -0.3861 39 1 5.5181 4.2444 -3.0203 40 1 6.0946 5.1196 -1.5743 41 1 5.6772 6.1662 -4.2470 42 1 6.2533 7.0422 -2.8012 43 1 2.2236 6.3739 -2.2488 44 1 2.8256 5.4279 -3.6500 45 1 3.0797 -0.6611 1.1757 46 1 1.5611 -0.3872 2.0628 47 1 2.5242 -2.8280 2.6782 48 1 3.0459 -5.6199 4.4314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753854506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:55 Heat of formation + Delta-G solvation = -187.451103 kcal Electronic energy + Delta-G solvation = -30680.388517 eV Core-core repulsion = 26019.183718 eV Total energy + Delta-G solvation = -4661.204800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -49.90002 -48.03441 -41.37296 -40.37118 -38.37150 -37.51062 -36.53193 -35.82429 -33.29028 -31.74712 -30.05723 -29.25213 -29.00934 -27.61130 -26.97061 -25.57351 -23.22029 -22.21175 -21.83115 -21.01228 -20.09003 -19.84946 -18.90755 -17.96410 -17.89844 -17.81685 -17.23961 -17.06803 -16.63507 -16.51673 -16.20322 -16.03447 -15.75790 -15.48983 -15.19609 -15.11476 -14.93550 -14.59864 -14.37097 -14.18569 -14.07796 -14.01572 -13.77478 -13.47324 -13.35310 -13.21729 -13.09535 -12.98524 -12.96867 -12.60332 -12.57205 -12.52669 -12.40150 -12.36425 -12.11606 -11.85687 -11.72282 -11.66957 -11.46937 -10.87074 -10.33719 -10.00530 -9.73617 -9.21227 -8.46811 -5.95432 1.36214 1.41298 1.50492 1.55746 1.84920 2.04505 2.29009 2.67682 2.81763 2.84749 3.10895 3.19799 3.33798 3.42275 3.66546 3.89065 3.96614 4.05525 4.09780 4.14978 4.20879 4.21694 4.33012 4.35351 4.37715 4.44592 4.49348 4.56726 4.60547 4.64709 4.69622 4.80293 4.85946 4.88040 4.97590 4.98628 5.09369 5.18118 5.22396 5.41094 5.46021 5.85148 6.05664 6.18725 6.34979 6.60381 7.11279 7.12887 7.55946 8.11831 8.70890 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.001685 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.427954 B =16615.580241 C =16971.439038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.124 3.876 5 N -0.609 5.609 6 C 0.063 3.937 7 C 0.515 3.485 8 O -0.575 6.575 9 C -0.105 4.105 10 H 0.135 0.865 11 C -0.111 4.111 12 C -0.156 4.156 13 C 0.276 3.724 14 F -0.198 7.198 15 F -0.207 7.207 16 C -0.143 4.143 17 C 0.060 3.940 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 29.773 -7.526 30.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.076 4.076 4 C 0.001 3.999 5 N -0.342 5.342 6 C -0.078 4.078 7 C 0.304 3.696 8 O -0.454 6.454 9 C -0.126 4.126 10 H 0.152 0.848 11 C -0.149 4.149 12 C -0.194 4.194 13 C 0.240 3.760 14 F -0.179 7.179 15 F -0.188 7.188 16 C -0.181 4.181 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.142 0.858 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.089 0.911 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.009 28.778 -8.668 30.072 hybrid contribution -0.081 -0.554 1.111 1.244 sum 0.928 28.224 -7.557 29.233 Atomic orbital electron populations 1.22486 0.86205 1.02522 1.00989 1.61382 1.09361 1.13111 1.42676 1.22380 0.99867 0.87317 0.98049 1.21298 0.99858 0.81621 0.97124 1.47905 1.15650 1.08727 1.61873 1.22277 0.96044 0.89015 1.00487 1.20862 0.81057 0.91232 0.76445 1.90739 1.58541 1.47996 1.48125 1.22163 0.96297 0.91181 1.02926 0.84771 1.22031 0.95132 0.97251 1.00456 1.23141 0.94806 0.97249 1.04190 1.22039 0.98492 0.83569 0.71890 1.93015 1.97523 1.67802 1.59574 1.93001 1.93757 1.85997 1.46006 1.23563 0.98458 0.94236 1.01874 1.21698 1.01635 0.90396 0.93370 1.20730 0.83750 0.88701 0.83913 1.90459 1.45127 1.81417 1.32879 1.41942 1.50046 1.07094 1.22174 1.19696 1.34303 0.84012 1.08043 0.90286 1.26055 0.96296 1.04388 0.94697 1.69682 1.38152 1.37119 1.11285 0.84859 0.78227 0.76866 0.78298 1.19799 1.19723 1.19476 0.89738 0.92687 0.94618 0.92098 0.92767 0.88264 0.91869 0.90398 0.89664 0.88826 0.90560 0.89167 0.87950 0.87622 0.85828 0.88013 0.88212 0.91108 0.77082 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.96 127.69 1.14 1.92 16 2 N -0.54 -17.76 4.50 -927.04 -4.17 -21.93 16 3 C 0.05 1.29 5.28 86.31 0.46 1.75 16 4 C 0.12 2.65 5.33 86.38 0.46 3.11 16 5 N -0.61 -9.63 2.87 -846.74 -2.43 -12.06 16 6 C 0.06 0.41 8.98 127.77 1.15 1.56 16 7 C 0.52 9.94 7.04 87.66 0.62 10.56 16 8 O -0.57 -17.03 15.00 -3.02 -0.05 -17.07 16 9 C -0.10 -1.19 2.32 -10.33 -0.02 -1.22 16 10 H 0.13 0.94 7.30 -2.39 -0.02 0.92 16 11 C -0.11 -1.39 6.19 31.32 0.19 -1.20 16 12 C -0.16 -1.56 6.41 31.32 0.20 -1.36 16 13 C 0.28 3.22 2.48 31.67 0.08 3.30 16 14 F -0.20 -2.65 17.17 44.97 0.77 -1.88 16 15 F -0.21 -3.20 17.16 44.97 0.77 -2.43 16 16 C -0.14 -1.28 5.17 32.02 0.17 -1.12 16 17 C 0.06 2.17 5.45 85.56 0.47 2.64 16 18 C 0.44 21.54 7.47 87.66 0.66 22.20 16 19 O -0.61 -34.35 13.91 -3.06 -0.04 -34.39 16 20 N -0.58 -30.13 5.29 -306.99 -1.62 -31.75 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 25 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.08 2.08 6.47 -2.39 -0.02 2.07 16 30 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.69 7.93 -2.39 -0.02 1.67 16 33 H 0.05 1.08 8.12 -2.38 -0.02 1.06 16 34 H 0.10 1.70 6.48 -2.39 -0.02 1.69 16 35 H 0.06 1.80 7.42 -2.39 -0.02 1.78 16 36 H 0.08 0.28 7.66 -2.38 -0.02 0.26 16 37 H 0.08 0.45 8.07 -2.39 -0.02 0.43 16 38 H 0.09 0.26 6.02 -2.39 -0.01 0.25 16 39 H 0.08 1.35 6.85 -2.39 -0.02 1.33 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.97 8.11 -2.39 -0.02 0.95 16 42 H 0.11 0.82 8.12 -2.39 -0.02 0.80 16 43 H 0.12 0.55 6.46 -2.39 -0.02 0.53 16 44 H 0.10 1.05 8.06 -2.38 -0.02 1.03 16 45 H 0.10 3.35 7.93 -2.39 -0.02 3.33 16 46 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 47 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 48 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -76.32 390.68 2.64 -73.68 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.26 Total: 28.81 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.84 Total: 23.53 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -7.94 Total: -115.75 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.09 Total: -51.47 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 1.54 Total: -4.31 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.32 2.64 -73.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753854506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.775 kcal (2) G-P(sol) polarization free energy of solvation -76.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds