Wall clock time and date at job start Wed Apr 1 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00089 * 2 1 4 4 C 1.52996 * 109.47152 * 66.04904 * 3 2 1 5 5 C 1.52998 * 109.47099 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46931 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99880 * 269.99325 * 6 5 4 8 8 C 1.34777 * 120.00266 * 90.00065 * 6 5 4 9 9 O 1.21274 * 120.00135 * 0.27234 * 8 6 5 10 10 C 1.50706 * 119.99766 * 179.97438 * 8 6 5 11 11 C 1.53781 * 113.61383 * 279.13403 * 10 8 6 12 12 C 1.53957 * 87.01759 * 220.05254 * 11 10 8 13 13 F 1.39905 * 113.53506 * 270.81037 * 12 11 10 14 14 F 1.39895 * 113.67069 * 139.93589 * 12 11 10 15 15 C 1.53783 * 87.11454 * 25.36149 * 12 11 10 16 16 C 1.46903 * 111.00014 * 236.04267 * 2 1 3 17 17 C 1.50696 * 109.47483 * 293.95752 * 16 2 1 18 18 O 1.21300 * 119.99986 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00174 * 179.97438 * 17 16 2 20 20 C 1.37098 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00050 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00283 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46758 * 90.00727 * 24 22 20 26 26 H 1.48499 * 109.47181 * 210.00199 * 24 22 20 27 27 H 1.48496 * 109.47286 * 330.00704 * 24 22 20 28 28 H 1.08996 * 109.47310 * 60.00066 * 1 2 3 29 29 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46913 * 299.99760 * 1 2 3 31 31 H 1.08997 * 109.46839 * 306.04562 * 3 2 1 32 32 H 1.08999 * 109.46668 * 186.04920 * 3 2 1 33 33 H 1.09002 * 109.47436 * 59.99599 * 4 3 2 34 34 H 1.09001 * 109.46761 * 300.00079 * 4 3 2 35 35 H 1.08997 * 109.47106 * 59.99527 * 5 4 3 36 36 H 1.09004 * 109.46895 * 300.00013 * 5 4 3 37 37 H 1.09002 * 109.47335 * 270.00735 * 7 6 5 38 38 H 1.09001 * 109.47076 * 30.00140 * 7 6 5 39 39 H 1.08996 * 109.47068 * 150.00167 * 7 6 5 40 40 H 1.09001 * 112.84823 * 50.33357 * 10 8 6 41 41 H 1.08998 * 113.61545 * 334.56772 * 11 10 8 42 42 H 1.08993 * 113.61303 * 105.47229 * 11 10 8 43 43 H 1.08997 * 113.61737 * 220.09125 * 15 12 11 44 44 H 1.08998 * 113.68520 * 89.19645 * 15 12 11 45 45 H 1.09001 * 109.46543 * 53.95130 * 16 2 1 46 46 H 1.09000 * 109.47326 * 173.95232 * 16 2 1 47 47 H 0.96993 * 119.99968 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00432 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3180 6 7 1.8314 4.1426 2.5805 7 6 0.5745 4.8862 2.6973 8 6 2.6676 4.0627 3.6345 9 8 3.7104 3.4515 3.5362 10 6 2.3098 4.7387 4.9330 11 6 2.6182 6.2452 4.9486 12 6 3.1005 6.0497 6.3976 13 9 2.0859 6.1993 7.3492 14 9 4.2518 6.7806 6.7097 15 6 3.3832 4.5851 6.0236 16 6 1.9955 -0.7661 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0053 -2.5833 -0.0029 19 7 2.0180 -3.1180 -1.9033 20 6 1.6923 -4.4413 -1.7531 21 1 1.1299 -4.7644 -0.8895 22 6 2.0846 -5.3666 -2.7126 23 7 2.7684 -4.9734 -3.7636 24 14 1.6414 -7.1696 -2.5076 25 1 0.3284 -7.4326 -3.1496 26 1 2.6833 -8.0115 -3.1487 27 1 1.5601 -7.4982 -1.0617 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0659 1.5015 2.1492 34 1 0.5473 2.0844 1.4265 35 1 1.7447 4.0416 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7394 5.9254 2.4130 38 1 -0.1722 4.4433 2.0383 39 1 0.2213 4.8430 3.7276 40 1 1.3034 4.4954 5.2736 41 1 3.4114 6.5357 4.2599 42 1 1.7314 6.8732 4.8637 43 1 3.1131 3.8749 6.8051 44 1 4.3857 4.4195 5.6292 45 1 1.5610 -0.3873 -2.0627 46 1 3.0797 -0.6612 -1.1756 47 1 2.5227 -2.8278 -2.6790 48 1 3.0427 -5.6193 -4.4332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755036445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:07 Heat of formation + Delta-G solvation = -137.572708 kcal Electronic energy + Delta-G solvation = -30068.441389 eV Core-core repulsion = 25409.399479 eV Total energy + Delta-G solvation = -4659.041910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.28730 -47.61740 -40.74729 -38.67051 -37.69849 -36.75031 -35.89330 -33.87239 -32.19985 -31.20841 -28.13761 -27.42682 -27.32594 -26.83634 -25.65178 -24.57579 -22.94780 -21.18684 -20.71805 -19.58227 -19.11346 -18.33111 -17.81445 -17.31893 -17.15449 -16.73882 -16.41219 -15.87427 -15.85767 -15.41211 -15.07105 -14.65030 -14.56163 -14.48482 -14.32497 -14.09182 -13.89028 -13.65597 -13.47559 -13.37223 -13.29334 -13.18815 -12.86314 -12.43871 -12.31131 -12.12434 -12.02868 -11.91430 -11.84104 -11.62033 -11.45722 -11.23036 -11.20231 -11.00528 -10.90534 -10.57600 -10.37585 -10.20112 -10.14674 -9.45725 -9.07486 -8.41791 -7.95341 -7.81613 -6.39693 -3.80349 2.13695 2.50939 2.90691 3.19010 3.22782 3.27551 3.33776 3.68088 3.71443 3.79712 3.93157 4.02343 4.24691 4.28078 4.57143 4.72101 4.79019 4.82725 4.87736 4.89218 4.95263 5.05541 5.12291 5.18504 5.19426 5.24533 5.26734 5.33215 5.45225 5.54783 5.60929 5.73235 5.74405 5.94625 5.98905 6.03575 6.08109 6.28058 6.32387 6.57591 6.92973 7.30856 7.43692 7.57197 7.75713 8.08834 8.64442 9.20427 9.57025 10.09184 10.78130 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.001540 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.558030 B =18182.316794 C =18528.619466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.115 3.885 6 N -0.612 5.612 7 C 0.075 3.925 8 C 0.527 3.473 9 O -0.525 6.525 10 C -0.133 4.133 11 C -0.147 4.147 12 C 0.255 3.745 13 F -0.178 7.178 14 F -0.187 7.187 15 C -0.143 4.143 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.012 0.988 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 27.227 12.871 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.345 5.345 7 C -0.068 4.068 8 C 0.314 3.686 9 O -0.401 6.401 10 C -0.155 4.155 11 C -0.186 4.186 12 C 0.219 3.781 13 F -0.159 7.159 14 F -0.168 7.168 15 C -0.181 4.181 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.145 0.855 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.150 26.328 13.767 29.788 hybrid contribution -0.325 -0.184 -1.115 1.176 sum -2.476 26.145 12.652 29.150 Atomic orbital electron populations 1.22553 0.86962 1.04361 0.98700 1.61522 1.08575 1.11402 1.42769 1.22028 1.00344 0.88876 0.95778 1.21914 1.01269 0.94516 0.99117 1.21519 1.02070 0.92963 0.84179 1.47818 1.21022 1.52920 1.12737 1.21874 0.85616 0.96171 1.03172 1.20040 0.83700 0.80360 0.84547 1.90753 1.24379 1.41972 1.82991 1.22572 1.02025 0.96118 0.94758 1.24051 1.04430 0.95867 0.94222 1.22004 0.75619 0.93649 0.86828 1.93036 1.59431 1.96498 1.66904 1.93031 1.49671 1.79671 1.94387 1.24015 1.02407 0.93508 0.98191 1.21862 1.00703 0.94146 0.91811 1.19754 0.85389 0.86686 0.85192 1.90482 1.43920 1.80161 1.31603 1.41868 1.49519 1.07358 1.21447 1.19698 1.32901 0.82317 1.07851 0.87934 1.25256 0.96854 1.00547 0.95334 1.69611 1.38136 1.35749 1.10892 0.85858 0.77970 0.81790 0.78672 1.20473 1.20940 1.19421 0.96922 0.88696 0.92236 0.95231 0.90732 0.90445 0.91739 0.90459 0.89526 0.92293 0.90543 0.90889 0.85455 0.86514 0.87925 0.88054 0.85498 0.93546 0.89394 0.77505 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.06 0.54 0.90 16 2 N -0.52 -8.80 4.50 -244.38 -1.10 -9.89 16 3 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 4 C -0.13 -1.42 5.46 -26.73 -0.15 -1.57 16 5 C 0.12 0.99 5.41 -4.04 -0.02 0.97 16 6 N -0.61 -4.63 2.87 -181.57 -0.52 -5.15 16 7 C 0.07 0.30 10.19 59.85 0.61 0.91 16 8 C 0.53 4.84 7.20 -10.98 -0.08 4.76 16 9 O -0.53 -7.03 15.48 5.56 0.09 -6.94 16 10 C -0.13 -0.80 2.91 -90.95 -0.26 -1.07 16 11 C -0.15 -0.70 7.34 -25.83 -0.19 -0.89 16 12 C 0.26 1.76 3.28 -25.82 -0.08 1.67 16 13 F -0.18 -1.39 17.38 2.25 0.04 -1.35 16 14 F -0.19 -1.64 17.41 2.25 0.04 -1.60 16 15 C -0.14 -0.98 7.19 -25.92 -0.19 -1.17 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.64 7.47 -10.99 -0.08 10.56 16 18 O -0.58 -15.74 13.91 5.54 0.08 -15.66 16 19 N -0.57 -14.48 5.29 -10.96 -0.06 -14.54 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.70 13.05 55.50 0.72 -23.97 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 1.89 5.83 -51.93 -0.30 1.59 16 30 H 0.06 0.84 6.47 -51.93 -0.34 0.50 16 31 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 32 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.68 6.55 -51.93 -0.34 0.34 16 35 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 37 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 38 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 39 H 0.07 0.20 6.25 -51.93 -0.32 -0.13 16 40 H 0.13 0.54 7.02 -51.93 -0.36 0.18 16 41 H 0.12 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.13 1.01 7.45 -51.93 -0.39 0.62 16 45 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.47 7.93 -51.93 -0.41 1.05 16 47 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -34.41 399.17 -7.23 -41.63 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.31 Total: 6.73 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.19 Total: 8.56 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.95 Total: -53.56 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.60 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.41 -7.23 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.940 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds