Wall clock time and date at job start Wed Apr 1 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00089 * 2 1 4 4 C 1.52996 * 109.47152 * 66.04904 * 3 2 1 5 5 C 1.52998 * 109.47099 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46931 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99880 * 269.99325 * 6 5 4 8 8 C 1.34777 * 120.00266 * 90.00065 * 6 5 4 9 9 O 1.21274 * 120.00135 * 0.27234 * 8 6 5 10 10 C 1.50706 * 119.99766 * 179.97438 * 8 6 5 11 11 C 1.53781 * 113.61383 * 279.13403 * 10 8 6 12 12 C 1.53957 * 87.01759 * 220.05254 * 11 10 8 13 13 F 1.39905 * 113.53506 * 270.81037 * 12 11 10 14 14 F 1.39895 * 113.67069 * 139.93589 * 12 11 10 15 15 C 1.53783 * 87.11454 * 25.36149 * 12 11 10 16 16 C 1.46903 * 111.00014 * 236.04267 * 2 1 3 17 17 C 1.50696 * 109.47483 * 293.95752 * 16 2 1 18 18 O 1.21300 * 119.99986 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00174 * 179.97438 * 17 16 2 20 20 C 1.37098 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00050 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00283 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00173 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46758 * 90.00727 * 24 22 20 26 26 H 1.48499 * 109.47181 * 210.00199 * 24 22 20 27 27 H 1.48496 * 109.47286 * 330.00704 * 24 22 20 28 28 H 1.08996 * 109.47310 * 60.00066 * 1 2 3 29 29 H 1.08998 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46913 * 299.99760 * 1 2 3 31 31 H 1.08997 * 109.46839 * 306.04562 * 3 2 1 32 32 H 1.08999 * 109.46668 * 186.04920 * 3 2 1 33 33 H 1.09002 * 109.47436 * 59.99599 * 4 3 2 34 34 H 1.09001 * 109.46761 * 300.00079 * 4 3 2 35 35 H 1.08997 * 109.47106 * 59.99527 * 5 4 3 36 36 H 1.09004 * 109.46895 * 300.00013 * 5 4 3 37 37 H 1.09002 * 109.47335 * 270.00735 * 7 6 5 38 38 H 1.09001 * 109.47076 * 30.00140 * 7 6 5 39 39 H 1.08996 * 109.47068 * 150.00167 * 7 6 5 40 40 H 1.09001 * 112.84823 * 50.33357 * 10 8 6 41 41 H 1.08998 * 113.61545 * 334.56772 * 11 10 8 42 42 H 1.08993 * 113.61303 * 105.47229 * 11 10 8 43 43 H 1.08997 * 113.61737 * 220.09125 * 15 12 11 44 44 H 1.08998 * 113.68520 * 89.19645 * 15 12 11 45 45 H 1.09001 * 109.46543 * 53.95130 * 16 2 1 46 46 H 1.09000 * 109.47326 * 173.95232 * 16 2 1 47 47 H 0.96993 * 119.99968 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00432 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1793 3.4860 1.3180 6 7 1.8314 4.1426 2.5805 7 6 0.5745 4.8862 2.6973 8 6 2.6676 4.0627 3.6345 9 8 3.7104 3.4515 3.5362 10 6 2.3098 4.7387 4.9330 11 6 2.6182 6.2452 4.9486 12 6 3.1005 6.0497 6.3976 13 9 2.0859 6.1993 7.3492 14 9 4.2518 6.7806 6.7097 15 6 3.3832 4.5851 6.0236 16 6 1.9955 -0.7661 -1.1376 17 6 1.6369 -2.2204 -0.9729 18 8 1.0053 -2.5833 -0.0029 19 7 2.0180 -3.1180 -1.9033 20 6 1.6923 -4.4413 -1.7531 21 1 1.1299 -4.7644 -0.8895 22 6 2.0846 -5.3666 -2.7126 23 7 2.7684 -4.9734 -3.7636 24 14 1.6414 -7.1696 -2.5076 25 1 0.3284 -7.4326 -3.1496 26 1 2.6833 -8.0115 -3.1487 27 1 1.5601 -7.4982 -1.0617 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0659 1.5015 2.1492 34 1 0.5473 2.0844 1.4265 35 1 1.7447 4.0416 0.4871 36 1 3.2636 3.4593 1.2095 37 1 0.7394 5.9254 2.4130 38 1 -0.1722 4.4433 2.0383 39 1 0.2213 4.8430 3.7276 40 1 1.3034 4.4954 5.2736 41 1 3.4114 6.5357 4.2599 42 1 1.7314 6.8732 4.8637 43 1 3.1131 3.8749 6.8051 44 1 4.3857 4.4195 5.6292 45 1 1.5610 -0.3873 -2.0627 46 1 3.0797 -0.6612 -1.1756 47 1 2.5227 -2.8278 -2.6790 48 1 3.0427 -5.6193 -4.4332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755036445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:05 Heat of formation + Delta-G solvation = -161.646133 kcal Electronic energy + Delta-G solvation = -30069.485291 eV Core-core repulsion = 25409.399479 eV Total energy + Delta-G solvation = -4660.085812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.86765 -48.21553 -41.38416 -40.37967 -38.51449 -37.84366 -36.73221 -35.87383 -33.33212 -33.07225 -29.50448 -28.36396 -27.79059 -27.28958 -26.98624 -25.95554 -24.02023 -22.01096 -21.56374 -20.97502 -20.14079 -19.84768 -18.90769 -17.97667 -17.81227 -17.64971 -17.29878 -16.94208 -16.73121 -16.56322 -16.44570 -16.15590 -15.77826 -15.34788 -15.26796 -15.08189 -14.99689 -14.68545 -14.55183 -14.48906 -13.98297 -13.75528 -13.67450 -13.48675 -13.27450 -13.09881 -13.05850 -12.92600 -12.82801 -12.75260 -12.53417 -12.48964 -12.41697 -12.37036 -12.25960 -12.12197 -11.51392 -11.48291 -11.45187 -10.86790 -10.28530 -9.99853 -9.68102 -9.16532 -8.46317 -5.94978 1.37606 1.41167 1.48327 1.54133 1.93889 2.05758 2.28754 2.40918 2.72384 2.81626 3.16594 3.20386 3.22190 3.32138 3.43627 3.76360 3.97703 4.12699 4.17350 4.18518 4.34243 4.36294 4.41219 4.42551 4.43923 4.47937 4.53964 4.60024 4.61885 4.64016 4.69152 4.71938 4.74664 4.84810 5.00066 5.06853 5.12227 5.18295 5.30826 5.41280 5.56228 5.89958 6.09213 6.26355 6.35542 6.61393 7.11499 7.13426 7.56947 8.13208 8.71100 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025071 B = 0.001540 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.558030 B =18182.316794 C =18528.619466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.117 4.117 5 C 0.120 3.880 6 N -0.609 5.609 7 C 0.065 3.935 8 C 0.520 3.480 9 O -0.579 6.579 10 C -0.125 4.125 11 C -0.130 4.130 12 C 0.250 3.750 13 F -0.182 7.182 14 F -0.201 7.201 15 C -0.151 4.151 16 C 0.058 3.942 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.152 0.848 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 29.211 12.202 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.270 5.270 3 C -0.067 4.067 4 C -0.156 4.156 5 C -0.004 4.004 6 N -0.341 5.341 7 C -0.076 4.076 8 C 0.308 3.692 9 O -0.458 6.458 10 C -0.146 4.146 11 C -0.168 4.168 12 C 0.214 3.786 13 F -0.163 7.163 14 F -0.182 7.182 15 C -0.189 4.189 16 C -0.073 4.073 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.199 1.199 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.169 0.831 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.444 28.362 13.078 31.421 hybrid contribution 0.055 -0.761 -0.865 1.153 sum -3.389 27.602 12.213 30.372 Atomic orbital electron populations 1.22412 0.86753 1.02074 1.00666 1.61468 1.09065 1.13995 1.42497 1.22093 1.00380 0.86759 0.97473 1.21787 1.01529 0.95428 0.96902 1.21428 1.01122 0.92008 0.85804 1.47940 1.21908 1.52337 1.11871 1.22188 0.83920 0.96865 1.04623 1.20582 0.83128 0.79779 0.85688 1.90731 1.26728 1.44432 1.83957 1.22595 1.02623 0.96743 0.92646 1.24014 1.05505 0.95203 0.92120 1.22195 0.75231 0.93386 0.87830 1.93024 1.59454 1.96496 1.67327 1.93002 1.50624 1.79954 1.94588 1.24025 1.02100 0.93983 0.98827 1.21726 1.01907 0.90177 0.93467 1.20825 0.83696 0.88872 0.83857 1.90460 1.45235 1.81487 1.32988 1.41939 1.50108 1.07050 1.22146 1.19653 1.34469 0.84098 1.08023 0.90406 1.26036 0.96266 1.04330 0.94686 1.69671 1.38114 1.37193 1.11168 0.84926 0.78288 0.76790 0.78311 1.19504 1.19536 1.19949 0.94801 0.93040 0.90316 0.92500 0.90735 0.94112 0.90825 0.87316 0.91397 0.90148 0.89747 0.89293 0.83064 0.86549 0.84900 0.87712 0.87183 0.91167 0.87675 0.77030 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.96 127.69 1.14 2.05 16 2 N -0.55 -17.95 4.50 -927.07 -4.17 -22.12 16 3 C 0.06 1.40 4.96 86.30 0.43 1.83 16 4 C -0.12 -2.41 5.46 30.59 0.17 -2.25 16 5 C 0.12 1.81 5.41 86.38 0.47 2.28 16 6 N -0.61 -7.88 2.87 -846.76 -2.43 -10.31 16 7 C 0.07 0.27 10.19 127.77 1.30 1.57 16 8 C 0.52 9.11 7.20 87.66 0.63 9.74 16 9 O -0.58 -16.01 15.48 -3.01 -0.05 -16.06 16 10 C -0.13 -1.30 2.91 -11.01 -0.03 -1.33 16 11 C -0.13 -0.93 7.34 31.18 0.23 -0.71 16 12 C 0.25 3.17 3.28 31.18 0.10 3.27 16 13 F -0.18 -2.57 17.38 44.97 0.78 -1.78 16 14 F -0.20 -3.47 17.41 44.97 0.78 -2.68 16 15 C -0.15 -2.05 7.19 31.12 0.22 -1.83 16 16 C 0.06 2.07 5.45 85.56 0.47 2.54 16 17 C 0.44 21.48 7.47 87.66 0.66 22.13 16 18 O -0.62 -34.77 13.91 -3.09 -0.04 -34.81 16 19 N -0.57 -30.09 5.29 -306.98 -1.62 -31.72 16 20 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 24 Si 0.99 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 2.08 5.83 -2.39 -0.01 2.07 16 30 H 0.08 2.10 6.47 -2.39 -0.02 2.09 16 31 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.07 1.73 7.93 -2.39 -0.02 1.71 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.36 6.55 -2.39 -0.02 1.35 16 35 H 0.11 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.07 1.32 7.42 -2.38 -0.02 1.30 16 37 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 0.27 8.07 -2.39 -0.02 0.25 16 39 H 0.09 0.11 6.25 -2.39 -0.01 0.09 16 40 H 0.15 0.83 7.02 -2.39 -0.02 0.82 16 41 H 0.12 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 1.90 7.45 -2.39 -0.02 1.88 16 45 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 46 H 0.11 3.37 7.93 -2.39 -0.02 3.35 16 47 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -78.29 399.17 2.88 -75.41 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.25 Total: 27.79 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 7.06 Total: 20.63 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -7.94 Total: -114.02 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.56 Total: -4.47 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -78.29 2.88 -75.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.235 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds