Wall clock time and date at job start Wed Apr 1 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00186 * 2 1 4 4 H 1.07996 * 120.00562 * 206.47107 * 3 2 1 5 5 C 1.38818 * 119.99914 * 26.47168 * 3 2 1 6 6 N 1.31627 * 119.99759 * 8.52475 * 5 3 2 7 7 Si 1.86798 * 120.00286 * 188.52061 * 5 3 2 8 8 H 1.48503 * 109.47032 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47150 * 120.00057 * 7 5 3 10 10 H 1.48497 * 109.47181 * 240.00598 * 7 5 3 11 11 C 1.46493 * 119.99999 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47377 * 90.00206 * 11 2 1 13 13 C 1.52995 * 109.47320 * 179.97438 * 12 11 2 14 14 N 1.46494 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00325 * 269.99903 * 14 13 12 16 16 C 1.34775 * 120.00093 * 90.00433 * 14 13 12 17 17 O 1.21674 * 119.99682 * 4.62386 * 16 14 13 18 18 C 1.46915 * 120.00322 * 184.63409 * 16 14 13 19 19 C 1.42477 * 128.39420 * 314.75687 * 18 16 14 20 20 N 1.29873 * 106.41886 * 180.28929 * 19 18 16 21 21 O 1.20739 * 112.81360 * 359.73898 * 20 19 18 22 22 C 1.34255 * 111.94956 * 0.02562 * 21 20 19 23 23 C 1.47361 * 127.19368 * 179.97438 * 22 21 20 24 24 C 1.41306 * 126.40907 * 174.29731 * 23 22 21 25 25 N 1.30475 * 108.05659 * 179.74597 * 24 23 22 26 26 N 1.39945 * 108.90809 * 0.23133 * 25 24 23 27 27 C 1.46501 * 125.76893 * 179.97438 * 26 25 24 28 28 C 1.34453 * 108.46481 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.47233 * 274.04131 * 1 2 3 30 30 H 1.09006 * 109.46604 * 34.03623 * 1 2 3 31 31 H 1.08994 * 109.47040 * 154.03088 * 1 2 3 32 32 H 0.97000 * 119.99487 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47358 * 330.00045 * 11 2 1 34 34 H 1.09007 * 109.47267 * 210.00327 * 11 2 1 35 35 H 1.08998 * 109.46582 * 59.99861 * 12 11 2 36 36 H 1.08998 * 109.46829 * 300.00467 * 12 11 2 37 37 H 1.09001 * 109.46992 * 59.99730 * 13 12 11 38 38 H 1.09007 * 109.47341 * 300.00131 * 13 12 11 39 39 H 1.08999 * 109.47865 * 265.70595 * 15 14 13 40 40 H 1.09003 * 109.46925 * 25.70203 * 15 14 13 41 41 H 1.08999 * 109.47705 * 145.70034 * 15 14 13 42 42 H 1.08002 * 126.78718 * 0.02968 * 19 18 16 43 43 H 1.08004 * 125.96982 * 0.02562 * 24 23 22 44 44 H 1.09003 * 109.46803 * 90.02171 * 27 26 25 45 45 H 1.08996 * 109.47073 * 210.02118 * 27 26 25 46 46 H 1.09002 * 109.46868 * 330.02941 * 27 26 25 47 47 H 1.08000 * 126.30840 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1448 1.2350 -0.4169 5 6 1.5648 2.3251 0.5359 6 7 0.4276 2.2342 1.1925 7 14 2.3916 3.9868 0.3254 8 1 3.6494 3.8197 -0.4462 9 1 1.4809 4.9037 -0.4061 10 1 2.7016 4.5582 1.6605 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 6 3.2181 -3.0357 -1.4412 14 7 3.4618 -3.4595 -2.8221 15 6 2.4852 -4.3062 -3.5117 16 6 4.5845 -3.0705 -3.4583 17 8 5.4347 -2.4384 -2.8600 18 6 4.7816 -3.4095 -4.8741 19 6 4.5594 -4.6576 -5.5244 20 7 4.8753 -4.4829 -6.7719 21 8 5.2451 -3.3581 -7.0081 22 6 5.2312 -2.5845 -5.9110 23 6 5.6151 -1.1648 -5.8171 24 6 5.4887 -0.3353 -4.6802 25 7 5.9409 0.8485 -4.9910 26 7 6.3673 0.8354 -6.3238 27 6 6.9392 1.9714 -7.0511 28 6 6.1635 -0.3958 -6.8241 29 1 -0.3633 0.0724 1.0251 30 1 -0.3633 0.8517 -0.5752 31 1 -0.3633 -0.9238 -0.4500 32 1 0.0191 3.0302 1.5672 33 1 1.6085 -2.0281 0.5147 34 1 3.1499 -1.1381 0.5144 35 1 3.0416 -0.9516 -1.9558 36 1 1.5002 -1.8415 -1.9556 37 1 2.6294 -3.7953 -0.9268 38 1 4.1706 -2.9047 -0.9274 39 1 2.7709 -5.3525 -3.4036 40 1 1.4984 -4.1522 -3.0751 41 1 2.4595 -4.0440 -4.5693 42 1 4.2031 -5.5698 -5.0689 43 1 5.0917 -0.6308 -3.7202 44 1 8.0222 1.9735 -6.9279 45 1 6.6941 1.8856 -8.1097 46 1 6.5268 2.9001 -6.6566 47 1 6.3906 -0.7239 -7.8277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755041146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:48 Heat of formation + Delta-G solvation = 142.163326 kcal Electronic energy + Delta-G solvation = -30743.705692 eV Core-core repulsion = 26547.483233 eV Total energy + Delta-G solvation = -4196.222459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.04069 -41.37090 -39.76152 -36.28746 -35.32641 -34.28244 -33.87340 -32.50943 -32.13149 -30.23574 -29.65104 -27.14977 -27.05483 -26.15715 -25.66773 -24.08409 -23.20772 -22.08368 -21.12909 -20.93130 -20.17827 -19.37840 -18.14368 -17.86322 -17.35451 -16.61809 -16.23951 -16.05040 -15.74683 -15.59082 -14.83082 -14.60344 -14.56815 -14.14404 -13.72984 -13.60693 -13.33724 -13.23896 -13.12429 -13.08988 -12.83942 -12.59268 -12.44980 -12.33042 -11.79291 -11.66573 -11.25035 -10.91928 -10.90102 -10.77712 -10.68529 -10.65292 -10.42352 -10.38134 -10.09800 -9.95832 -9.80729 -9.73359 -9.66520 -8.68563 -8.43383 -8.28411 -6.59783 -5.63920 -3.13468 0.60429 1.72893 1.74471 2.10626 2.63697 2.64811 2.87219 3.17710 3.43821 3.50967 3.55523 3.98769 4.05695 4.40452 4.51476 4.57064 4.58282 4.75008 4.81356 5.00285 5.04133 5.10925 5.18528 5.21583 5.35301 5.45740 5.48280 5.52681 5.54314 5.57958 5.67724 5.83376 6.05766 6.12271 6.19042 6.37006 6.51984 6.55765 6.64582 6.81550 6.88219 7.08374 7.33071 7.42898 7.44806 7.80772 7.91470 7.97182 8.13227 8.51686 9.34220 9.96521 10.46628 11.40872 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.003513 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.708669 B = 7969.255149 C =10551.788483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.250 4.250 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.901 3.099 8 H -0.276 1.276 9 H -0.291 1.291 10 H -0.290 1.290 11 C 0.156 3.844 12 C -0.151 4.151 13 C 0.115 3.885 14 N -0.603 5.603 15 C 0.076 3.924 16 C 0.596 3.404 17 O -0.523 6.523 18 C -0.261 4.261 19 C 0.034 3.966 20 N -0.370 5.370 21 O 0.097 5.903 22 C 0.136 3.864 23 C -0.205 4.205 24 C 0.112 3.888 25 N -0.288 5.288 26 N -0.364 5.364 27 C 0.096 3.904 28 C 0.102 3.898 29 H 0.029 0.971 30 H 0.039 0.961 31 H -0.006 1.006 32 H 0.250 0.750 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.197 0.803 43 H 0.204 0.796 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -12.131 -18.893 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.380 4.380 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.556 5.556 7 Si 0.731 3.269 8 H -0.201 1.201 9 H -0.218 1.218 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.007 4.007 14 N -0.336 5.336 15 C -0.068 4.068 16 C 0.383 3.617 17 O -0.401 6.401 18 C -0.270 4.270 19 C -0.146 4.146 20 N -0.077 5.077 21 O 0.037 5.963 22 C 0.069 3.931 23 C -0.218 4.218 24 C -0.076 4.076 25 N -0.106 5.106 26 N -0.141 5.141 27 C -0.044 4.044 28 C -0.050 4.050 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.214 0.786 43 H 0.220 0.780 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.791 -11.080 -19.216 24.246 hybrid contribution -0.034 0.258 0.238 0.352 sum 9.757 -10.823 -18.978 23.927 Atomic orbital electron populations 1.20767 0.82892 0.95255 0.99148 1.43851 1.01717 1.00735 1.86232 1.19247 1.00150 0.86367 1.32239 0.91458 1.25104 0.97758 0.98709 0.97975 1.70058 1.19111 1.27565 1.38851 0.86219 0.79002 0.84329 0.77344 1.20084 1.21754 1.21692 1.20627 0.96162 0.88393 0.92080 1.22634 0.99304 0.95186 1.02162 1.21680 1.01712 0.97142 0.80126 1.47771 1.19987 1.50729 1.15069 1.21905 0.93062 0.93821 0.97985 1.16789 0.81668 0.79199 0.84025 1.90817 1.42560 1.39977 1.66705 1.21181 1.14919 0.94762 0.96092 1.24958 1.00891 0.99376 0.89332 1.73500 1.17457 0.97869 1.18892 1.84805 1.63245 1.15432 1.32781 1.21951 0.94928 0.91227 0.84948 1.17828 1.18167 0.89588 0.96223 1.24608 0.95262 0.88465 0.99262 1.77484 1.19567 1.21543 0.92051 1.48508 1.46710 1.09196 1.09706 1.22012 0.99278 0.87412 0.95733 1.23031 0.97266 0.85289 0.99380 0.95235 0.94208 0.98708 0.93938 0.94762 0.93329 0.91878 0.92821 0.90627 0.89548 0.92566 0.90306 0.91260 0.78608 0.77990 0.90121 0.89046 0.88566 0.79480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 8.97 59.85 0.54 4.67 16 2 N -0.60 -15.56 2.92 -181.12 -0.53 -16.09 16 3 C -0.25 -7.13 9.63 -15.06 -0.15 -7.27 16 4 H 0.07 1.92 7.84 -52.49 -0.41 1.50 16 5 C 0.00 0.07 5.18 -17.42 -0.09 -0.02 16 6 N -0.91 -27.25 10.69 55.49 0.59 -26.65 16 7 Si 0.90 22.69 29.56 -169.99 -5.03 17.67 16 8 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 12 C -0.15 -2.65 5.86 -26.73 -0.16 -2.81 16 13 C 0.12 1.59 5.42 -4.05 -0.02 1.57 16 14 N -0.60 -7.59 2.87 -183.04 -0.53 -8.12 16 15 C 0.08 0.67 9.29 59.85 0.56 1.22 16 16 C 0.60 8.58 6.77 -12.75 -0.09 8.50 16 17 O -0.52 -9.21 13.82 5.21 0.07 -9.14 16 18 C -0.26 -3.29 5.27 -104.12 -0.55 -3.83 16 19 C 0.03 0.35 10.13 -16.75 -0.17 0.18 16 20 N -0.37 -4.25 11.97 30.85 0.37 -3.89 16 21 O 0.10 1.11 11.17 16.65 0.19 1.29 16 22 C 0.14 1.69 7.45 -35.24 -0.26 1.43 16 23 C -0.20 -2.62 6.12 -105.08 -0.64 -3.27 16 24 C 0.11 1.74 10.89 -16.96 -0.18 1.56 16 25 N -0.29 -4.44 12.50 30.87 0.39 -4.06 16 26 N -0.36 -3.94 3.99 -67.54 -0.27 -4.21 16 27 C 0.10 0.57 11.45 59.85 0.68 1.25 16 28 C 0.10 0.98 11.51 -16.46 -0.19 0.80 16 29 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 30 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 31 H -0.01 -0.12 8.04 -51.93 -0.42 -0.54 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.09 1.30 7.36 -51.93 -0.38 0.91 16 39 H 0.06 0.36 7.68 -51.93 -0.40 -0.03 16 40 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 41 H 0.07 0.60 6.14 -51.93 -0.32 0.28 16 42 H 0.20 1.36 7.24 -52.49 -0.38 0.98 16 43 H 0.20 3.53 5.31 -52.48 -0.28 3.25 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -36.41 394.05 -6.24 -42.66 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.70 Total: -2.55 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.74 Total: 7.14 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.03 Total: -63.01 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.26 Total: -7.85 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.41 -6.24 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755041146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.821 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds