Wall clock time and date at job start Wed Apr 1 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00186 * 2 1 4 4 H 1.07996 * 120.00562 * 206.47107 * 3 2 1 5 5 C 1.38818 * 119.99914 * 26.47168 * 3 2 1 6 6 N 1.31627 * 119.99759 * 8.52475 * 5 3 2 7 7 Si 1.86798 * 120.00286 * 188.52061 * 5 3 2 8 8 H 1.48503 * 109.47032 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.47150 * 120.00057 * 7 5 3 10 10 H 1.48497 * 109.47181 * 240.00598 * 7 5 3 11 11 C 1.46493 * 119.99999 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47377 * 90.00206 * 11 2 1 13 13 C 1.52995 * 109.47320 * 179.97438 * 12 11 2 14 14 N 1.46494 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00325 * 269.99903 * 14 13 12 16 16 C 1.34775 * 120.00093 * 90.00433 * 14 13 12 17 17 O 1.21674 * 119.99682 * 4.62386 * 16 14 13 18 18 C 1.46915 * 120.00322 * 184.63409 * 16 14 13 19 19 C 1.42477 * 128.39420 * 314.75687 * 18 16 14 20 20 N 1.29873 * 106.41886 * 180.28929 * 19 18 16 21 21 O 1.20739 * 112.81360 * 359.73898 * 20 19 18 22 22 C 1.34255 * 111.94956 * 0.02562 * 21 20 19 23 23 C 1.47361 * 127.19368 * 179.97438 * 22 21 20 24 24 C 1.41306 * 126.40907 * 174.29731 * 23 22 21 25 25 N 1.30475 * 108.05659 * 179.74597 * 24 23 22 26 26 N 1.39945 * 108.90809 * 0.23133 * 25 24 23 27 27 C 1.46501 * 125.76893 * 179.97438 * 26 25 24 28 28 C 1.34453 * 108.46481 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.47233 * 274.04131 * 1 2 3 30 30 H 1.09006 * 109.46604 * 34.03623 * 1 2 3 31 31 H 1.08994 * 109.47040 * 154.03088 * 1 2 3 32 32 H 0.97000 * 119.99487 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47358 * 330.00045 * 11 2 1 34 34 H 1.09007 * 109.47267 * 210.00327 * 11 2 1 35 35 H 1.08998 * 109.46582 * 59.99861 * 12 11 2 36 36 H 1.08998 * 109.46829 * 300.00467 * 12 11 2 37 37 H 1.09001 * 109.46992 * 59.99730 * 13 12 11 38 38 H 1.09007 * 109.47341 * 300.00131 * 13 12 11 39 39 H 1.08999 * 109.47865 * 265.70595 * 15 14 13 40 40 H 1.09003 * 109.46925 * 25.70203 * 15 14 13 41 41 H 1.08999 * 109.47705 * 145.70034 * 15 14 13 42 42 H 1.08002 * 126.78718 * 0.02968 * 19 18 16 43 43 H 1.08004 * 125.96982 * 0.02562 * 24 23 22 44 44 H 1.09003 * 109.46803 * 90.02171 * 27 26 25 45 45 H 1.08996 * 109.47073 * 210.02118 * 27 26 25 46 46 H 1.09002 * 109.46868 * 330.02941 * 27 26 25 47 47 H 1.08000 * 126.30840 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1448 1.2350 -0.4169 5 6 1.5648 2.3251 0.5359 6 7 0.4276 2.2342 1.1925 7 14 2.3916 3.9868 0.3254 8 1 3.6494 3.8197 -0.4462 9 1 1.4809 4.9037 -0.4061 10 1 2.7016 4.5582 1.6605 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 6 3.2181 -3.0357 -1.4412 14 7 3.4618 -3.4595 -2.8221 15 6 2.4852 -4.3062 -3.5117 16 6 4.5845 -3.0705 -3.4583 17 8 5.4347 -2.4384 -2.8600 18 6 4.7816 -3.4095 -4.8741 19 6 4.5594 -4.6576 -5.5244 20 7 4.8753 -4.4829 -6.7719 21 8 5.2451 -3.3581 -7.0081 22 6 5.2312 -2.5845 -5.9110 23 6 5.6151 -1.1648 -5.8171 24 6 5.4887 -0.3353 -4.6802 25 7 5.9409 0.8485 -4.9910 26 7 6.3673 0.8354 -6.3238 27 6 6.9392 1.9714 -7.0511 28 6 6.1635 -0.3958 -6.8241 29 1 -0.3633 0.0724 1.0251 30 1 -0.3633 0.8517 -0.5752 31 1 -0.3633 -0.9238 -0.4500 32 1 0.0191 3.0302 1.5672 33 1 1.6085 -2.0281 0.5147 34 1 3.1499 -1.1381 0.5144 35 1 3.0416 -0.9516 -1.9558 36 1 1.5002 -1.8415 -1.9556 37 1 2.6294 -3.7953 -0.9268 38 1 4.1706 -2.9047 -0.9274 39 1 2.7709 -5.3525 -3.4036 40 1 1.4984 -4.1522 -3.0751 41 1 2.4595 -4.0440 -4.5693 42 1 4.2031 -5.5698 -5.0689 43 1 5.0917 -0.6308 -3.7202 44 1 8.0222 1.9735 -6.9279 45 1 6.6941 1.8856 -8.1097 46 1 6.5268 2.9001 -6.6566 47 1 6.3906 -0.7239 -7.8277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755041146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:47 Heat of formation + Delta-G solvation = 117.882804 kcal Electronic energy + Delta-G solvation = -30744.758574 eV Core-core repulsion = 26547.483233 eV Total energy + Delta-G solvation = -4197.275341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.89285 -42.28844 -40.84244 -37.92291 -36.72781 -35.22157 -34.72873 -33.94630 -33.34003 -31.95255 -30.57717 -28.16143 -27.88618 -27.85263 -27.25026 -25.34188 -24.13608 -23.49784 -22.19198 -21.93890 -21.75096 -20.36595 -19.05881 -18.75184 -18.70488 -18.23753 -17.33494 -17.03187 -16.75792 -16.61402 -16.52147 -15.86706 -15.56435 -15.47956 -15.24498 -14.69074 -14.58549 -14.44905 -14.36763 -14.10801 -13.78073 -13.73132 -13.34390 -13.23165 -13.17565 -12.94514 -12.78522 -12.68765 -12.52264 -12.47783 -12.24683 -12.09302 -11.89069 -11.87079 -11.52866 -11.39915 -11.35154 -11.07623 -10.66987 -10.65477 -9.70917 -9.19178 -8.70202 -7.84163 -5.35981 -0.27993 0.80113 0.89068 1.34556 1.40810 1.42047 1.53831 1.59546 1.72140 1.89617 2.21295 2.48637 3.16504 3.23084 3.29031 3.61608 3.72011 3.78820 3.81688 3.94724 4.09988 4.20651 4.28633 4.38628 4.40625 4.42185 4.56588 4.60019 4.61281 4.67037 4.70161 4.71959 4.78901 4.86212 4.88602 4.94212 4.97380 5.24510 5.28262 5.31270 5.51501 5.59083 5.63981 5.72246 5.85946 6.32546 6.35230 6.45021 7.06081 7.12732 7.16679 7.88895 8.31377 9.18145 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.003513 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.708669 B = 7969.255149 C =10551.788483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.622 5.622 3 C -0.260 4.260 4 H 0.057 0.943 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.961 3.039 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.286 1.286 11 C 0.153 3.847 12 C -0.131 4.131 13 C 0.125 3.875 14 N -0.601 5.601 15 C 0.068 3.932 16 C 0.591 3.409 17 O -0.567 6.567 18 C -0.281 4.281 19 C 0.054 3.946 20 N -0.381 5.381 21 O 0.100 5.900 22 C 0.136 3.864 23 C -0.231 4.231 24 C 0.090 3.910 25 N -0.336 5.336 26 N -0.359 5.359 27 C 0.085 3.915 28 C 0.131 3.869 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.034 0.966 32 H 0.249 0.751 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.024 0.976 36 H 0.058 0.942 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.231 0.769 43 H 0.173 0.827 44 H 0.096 0.904 45 H 0.133 0.867 46 H 0.088 0.912 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.457 -13.967 -21.446 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.345 5.345 3 C -0.391 4.391 4 H 0.074 0.926 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.790 3.210 8 H -0.200 1.200 9 H -0.214 1.214 10 H -0.212 1.212 11 C 0.026 3.974 12 C -0.172 4.172 13 C 0.003 3.997 14 N -0.332 5.332 15 C -0.074 4.074 16 C 0.380 3.620 17 O -0.448 6.448 18 C -0.290 4.290 19 C -0.126 4.126 20 N -0.090 5.090 21 O 0.043 5.957 22 C 0.070 3.930 23 C -0.244 4.244 24 C -0.097 4.097 25 N -0.156 5.156 26 N -0.136 5.136 27 C -0.054 4.054 28 C -0.022 4.022 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.247 0.753 43 H 0.189 0.811 44 H 0.115 0.885 45 H 0.151 0.849 46 H 0.107 0.893 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 10.078 -12.943 -21.794 27.277 hybrid contribution -0.085 0.822 0.958 1.265 sum 9.993 -12.121 -20.836 26.094 Atomic orbital electron populations 1.20532 0.82682 0.95941 0.97551 1.44116 1.02210 1.01717 1.86497 1.19414 0.99936 0.87994 1.31716 0.92570 1.25782 0.98534 1.01780 0.98203 1.70198 1.20173 1.28141 1.39787 0.85288 0.78032 0.80468 0.77256 1.20008 1.21372 1.21219 1.20803 0.95451 0.87027 0.94077 1.22309 0.99350 0.96230 0.99320 1.21479 1.00825 0.96068 0.81368 1.47815 1.20158 1.50617 1.14628 1.22209 0.92539 0.94842 0.97765 1.17105 0.81656 0.78503 0.84733 1.90796 1.44318 1.41875 1.67777 1.21122 1.16415 0.96195 0.95226 1.25375 0.99282 0.99419 0.88478 1.73480 1.18212 0.97836 1.19431 1.84805 1.63433 1.15368 1.32108 1.21981 0.94406 0.91236 0.85384 1.17951 1.19995 0.90163 0.96271 1.24260 0.96436 0.89664 0.99353 1.77348 1.21160 1.21880 0.95203 1.48893 1.45567 1.10866 1.08269 1.22478 1.00014 0.85598 0.97309 1.23776 0.94139 0.83928 1.00356 0.97559 0.97084 0.94729 0.94188 0.91982 0.94588 0.95750 0.92296 0.86903 0.91237 0.89207 0.89323 0.91043 0.75256 0.81070 0.88510 0.84856 0.89312 0.74280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 8.97 127.77 1.15 10.17 16 2 N -0.62 -32.72 2.92 -726.94 -2.12 -34.84 16 3 C -0.26 -15.30 9.63 84.04 0.81 -14.49 16 4 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 5 C -0.05 -2.83 5.18 84.86 0.44 -2.39 16 6 N -0.94 -57.31 10.69 21.65 0.23 -57.08 16 7 Si 0.96 47.93 29.56 68.60 2.03 49.96 16 8 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 10 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 11 C 0.15 6.32 5.65 86.38 0.49 6.81 16 12 C -0.13 -4.62 5.86 30.59 0.18 -4.44 16 13 C 0.13 3.36 5.42 86.38 0.47 3.83 16 14 N -0.60 -14.53 2.87 -851.26 -2.45 -16.97 16 15 C 0.07 1.00 9.29 127.77 1.19 2.19 16 16 C 0.59 17.33 6.77 86.52 0.59 17.91 16 17 O -0.57 -21.32 13.82 -4.27 -0.06 -21.38 16 18 C -0.28 -6.90 5.27 -19.54 -0.10 -7.00 16 19 C 0.05 0.98 10.13 86.04 0.87 1.85 16 20 N -0.38 -7.87 11.97 -56.82 -0.68 -8.55 16 21 O 0.10 2.10 11.17 69.81 0.78 2.88 16 22 C 0.14 3.31 7.45 25.08 0.19 3.50 16 23 C -0.23 -5.93 6.12 -20.16 -0.12 -6.06 16 24 C 0.09 3.01 10.89 85.65 0.93 3.94 16 25 N -0.34 -10.89 12.50 -56.25 -0.70 -11.59 16 26 N -0.36 -7.39 3.99 -367.60 -1.47 -8.85 16 27 C 0.08 0.80 11.45 127.77 1.46 2.26 16 28 C 0.13 2.26 11.51 84.25 0.97 3.23 16 29 H 0.01 0.34 7.34 -2.39 -0.02 0.32 16 30 H 0.01 0.58 7.38 -2.38 -0.02 0.56 16 31 H 0.03 1.44 8.04 -2.39 -0.02 1.43 16 32 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.04 1.56 8.04 -2.38 -0.02 1.54 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 2.22 8.07 -2.39 -0.02 2.20 16 38 H 0.07 2.13 7.36 -2.38 -0.02 2.11 16 39 H 0.09 0.76 7.68 -2.39 -0.02 0.74 16 40 H 0.09 1.16 8.04 -2.39 -0.02 1.15 16 41 H 0.07 1.05 6.14 -2.39 -0.01 1.03 16 42 H 0.23 2.26 7.24 -2.91 -0.02 2.24 16 43 H 0.17 6.74 5.31 -2.91 -0.02 6.73 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -85.02 394.05 6.06 -78.97 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 0.99 Total: 6.17 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 9.50 Total: 21.29 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -7.18 Total: -137.88 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.72 Total: -18.50 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -85.02 6.06 -78.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755041146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.849 kcal (2) G-P(sol) polarization free energy of solvation -85.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds