Wall clock time and date at job start Wed Apr 1 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99946 * 2 1 4 4 C 1.50700 * 109.47095 * 66.04450 * 3 2 1 5 5 O 1.21296 * 120.00003 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.37094 * 119.99709 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00736 * 359.97438 * 7 6 4 9 9 C 1.38958 * 119.99418 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99591 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00130 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46846 * 90.00244 * 11 9 7 13 13 H 1.48498 * 109.46886 * 210.00098 * 11 9 7 14 14 H 1.48494 * 109.47269 * 330.00309 * 11 9 7 15 15 C 1.46902 * 110.99898 * 236.04306 * 2 1 3 16 16 C 1.53036 * 109.46435 * 298.95588 * 15 2 1 17 17 C 1.53188 * 109.31372 * 181.37212 * 16 15 2 18 18 N 1.46918 * 108.77621 * 305.36525 * 17 16 15 19 19 C 1.34779 * 120.63221 * 233.58421 * 18 17 16 20 20 O 1.21484 * 119.99720 * 7.47521 * 19 18 17 21 21 C 1.48456 * 120.00252 * 187.46881 * 19 18 17 22 22 C 1.39535 * 120.54831 * 188.92988 * 21 19 18 23 23 C 1.38758 * 118.26315 * 180.02562 * 22 21 19 24 24 N 1.32209 * 119.14520 * 0.02562 * 23 22 21 25 25 C 1.31877 * 121.03861 * 0.02562 * 24 23 22 26 26 N 1.31583 * 121.91798 * 359.97438 * 25 24 23 27 27 C 1.46926 * 118.74052 * 53.85732 * 18 17 16 28 28 C 1.53042 * 109.44607 * 59.01868 * 15 2 1 29 29 H 1.09005 * 109.46535 * 183.95302 * 1 2 3 30 30 H 1.08995 * 109.46769 * 303.95070 * 1 2 3 31 31 H 1.08993 * 109.46955 * 63.95813 * 1 2 3 32 32 H 1.08996 * 109.46877 * 186.04588 * 3 2 1 33 33 H 1.08993 * 109.46769 * 306.04432 * 3 2 1 34 34 H 0.97001 * 119.99636 * 0.02562 * 6 4 3 35 35 H 0.96997 * 119.99778 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.45696 * 178.97974 * 15 2 1 37 37 H 1.08998 * 109.50086 * 61.41553 * 16 15 2 38 38 H 1.09001 * 109.49649 * 301.32119 * 16 15 2 39 39 H 1.09000 * 109.58558 * 185.57192 * 17 16 15 40 40 H 1.09007 * 109.70509 * 65.22537 * 17 16 15 41 41 H 1.07995 * 120.87181 * 0.05489 * 22 21 19 42 42 H 1.08000 * 120.42930 * 179.73229 * 23 22 21 43 43 H 1.08004 * 119.04182 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.58588 * 65.92966 * 27 18 17 45 45 H 1.09006 * 109.58820 * 186.35192 * 27 18 17 46 46 H 1.09004 * 109.49763 * 298.56766 * 28 15 2 47 47 H 1.09000 * 109.49664 * 58.66700 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4452 2.1411 6 7 2.0189 3.3199 1.5237 7 6 1.6931 3.9343 2.7052 8 1 1.1301 3.3988 3.4552 9 6 2.0864 5.2467 2.9372 10 7 1.7738 5.8359 4.0694 11 14 3.0596 6.1733 1.6397 12 1 2.1230 6.8774 0.7274 13 1 3.9463 7.1646 2.3001 14 1 3.8831 5.2147 0.8600 15 6 1.9955 -0.7661 -1.1376 16 6 1.5261 -2.2190 -1.0349 17 6 2.1049 -3.0223 -2.2038 18 7 1.7388 -2.3574 -3.4617 19 6 1.1178 -3.0401 -4.4439 20 8 0.7340 -4.1755 -4.2455 21 6 0.9027 -2.4047 -5.7683 22 6 0.1032 -3.0232 -6.7302 23 6 -0.0652 -2.3875 -7.9521 24 7 0.5330 -1.2274 -8.1622 25 6 1.2831 -0.6707 -7.2313 26 7 1.4709 -1.2369 -6.0584 27 6 2.0679 -0.9355 -3.6311 28 6 1.4845 -0.1542 -2.4440 29 1 -0.3632 -1.0253 0.0709 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4511 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5612 1.9272 -0.8309 34 1 2.5242 3.8010 0.8499 35 1 2.0486 6.7519 4.2315 36 1 3.0849 -0.7345 -1.1235 37 1 0.4373 -2.2532 -1.0737 38 1 1.8706 -2.6470 -0.0935 39 1 1.6951 -4.0323 -2.1915 40 1 3.1906 -3.0675 -2.1168 41 1 -0.3726 -3.9715 -6.5288 42 1 -0.6732 -2.8370 -8.7233 43 1 1.7571 0.2777 -7.4375 44 1 3.1506 -0.8116 -3.6570 45 1 1.6337 -0.5681 -4.5610 46 1 0.3961 -0.2078 -2.4696 47 1 1.7995 0.8875 -2.5055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755534774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:39 Heat of formation + Delta-G solvation = 24.391455 kcal Electronic energy + Delta-G solvation = -30443.676564 eV Core-core repulsion = 26242.347134 eV Total energy + Delta-G solvation = -4201.329431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90260 -40.30119 -39.07852 -37.89733 -35.89051 -34.59165 -33.91027 -32.69194 -31.75080 -31.57799 -31.09948 -28.13116 -26.77950 -25.60330 -25.06292 -24.41355 -23.53090 -22.79608 -21.04522 -19.58858 -19.31416 -18.42096 -18.21908 -17.88797 -16.70021 -16.22960 -16.17471 -15.98744 -15.83414 -15.19713 -15.05930 -14.96612 -14.81278 -14.45854 -14.34108 -14.11892 -14.00338 -13.56857 -13.30218 -13.11602 -12.78338 -12.53269 -12.37676 -12.19398 -11.91727 -11.56501 -11.50997 -11.44476 -11.27863 -11.14537 -10.96168 -10.89636 -10.80219 -10.60229 -10.50097 -10.35173 -9.97488 -9.53536 -9.45713 -9.01340 -8.54575 -8.17656 -7.87284 -6.30887 -3.82125 -0.07795 0.28951 2.26433 2.41889 3.02036 3.05909 3.14488 3.20715 3.31567 3.54164 3.74540 3.83716 3.90823 4.10140 4.21135 4.42328 4.56267 4.71646 4.84356 4.85131 4.91230 4.94066 5.03385 5.07258 5.20627 5.24412 5.36322 5.44445 5.53284 5.59736 5.64833 5.70124 5.74702 5.81802 5.88561 5.92403 5.97692 6.03407 6.13919 6.19272 6.32711 6.53156 6.94110 7.19133 7.30881 7.32973 7.59209 7.62284 8.15207 8.60822 8.95863 9.42941 9.84462 10.82315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002261 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.204369 B =12383.601096 C =13580.152002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.510 5.510 3 C 0.042 3.958 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.119 0.881 9 C 0.040 3.960 10 N -0.882 5.882 11 Si 0.880 3.120 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.083 3.917 16 C -0.124 4.124 17 C 0.110 3.890 18 N -0.584 5.584 19 C 0.567 3.433 20 O -0.529 6.529 21 C 0.136 3.864 22 C -0.169 4.169 23 C 0.154 3.846 24 N -0.506 5.506 25 C 0.291 3.709 26 N -0.487 5.487 27 C 0.076 3.924 28 C -0.173 4.173 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.205 0.795 44 H 0.069 0.931 45 H 0.145 0.855 46 H 0.069 0.931 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 -15.297 -26.204 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.089 4.089 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.026 4.026 16 C -0.163 4.163 17 C -0.012 4.012 18 N -0.315 5.315 19 C 0.352 3.648 20 O -0.404 6.404 21 C -0.011 4.011 22 C -0.192 4.192 23 C -0.013 4.013 24 N -0.220 5.220 25 C 0.004 3.996 26 N -0.204 5.204 27 C -0.047 4.047 28 C -0.213 4.213 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.035 0.965 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.180 0.820 42 H 0.195 0.805 43 H 0.221 0.779 44 H 0.087 0.913 45 H 0.161 0.839 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.799 -15.491 -25.054 29.467 hybrid contribution 0.256 0.765 -1.422 1.635 sum 1.055 -14.726 -26.476 30.314 Atomic orbital electron populations 1.22603 0.86939 1.02157 1.01367 1.61819 1.08759 1.12430 1.40206 1.21898 1.00716 0.89535 0.96772 1.19668 0.85064 0.82386 0.89021 1.90530 1.42625 1.64062 1.46818 1.42217 1.50982 1.12050 1.17925 1.19422 1.33638 0.96194 0.93966 0.86299 1.25043 0.97925 0.96525 0.96752 1.69622 1.45834 1.13551 1.23200 0.86671 0.80483 0.80530 0.81706 1.19703 1.20196 1.19472 1.21809 0.99704 0.93331 0.87782 1.21961 1.01613 0.94496 0.98197 1.21780 1.00085 0.97576 0.81804 1.48029 1.56284 1.11893 1.15278 1.17818 0.78635 0.85364 0.82946 1.90799 1.50399 1.18053 1.81190 1.21710 0.93197 0.90959 0.95281 1.23003 0.98825 1.02891 0.94475 1.23434 0.93160 0.89527 0.95205 1.68394 1.08159 1.11051 1.34409 1.25250 0.91261 0.99315 0.83802 1.68407 1.22377 1.09223 1.20416 1.23075 1.01238 0.78390 1.02003 1.22791 1.01906 1.00389 0.96192 0.91940 0.88699 0.96479 0.89365 0.93297 0.79770 0.91644 0.89886 0.91162 0.89311 0.88664 0.90782 0.82049 0.80452 0.77865 0.91260 0.83874 0.91272 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.46 60.07 0.51 0.77 16 2 N -0.51 -7.85 4.49 -236.29 -1.06 -8.91 16 3 C 0.04 0.69 4.89 -4.98 -0.02 0.66 16 4 C 0.45 10.14 7.47 -10.98 -0.08 10.06 16 5 O -0.56 -14.75 13.91 5.54 0.08 -14.68 16 6 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 7 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 C 0.04 1.10 5.50 -17.46 -0.10 1.00 16 10 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 11 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 14 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 15 C 0.08 0.95 2.19 -67.67 -0.15 0.80 16 16 C -0.12 -1.31 5.11 -26.62 -0.14 -1.45 16 17 C 0.11 1.04 6.44 -3.72 -0.02 1.02 16 18 N -0.58 -5.79 2.97 -173.39 -0.51 -6.30 16 19 C 0.57 6.15 7.67 -12.05 -0.09 6.06 16 20 O -0.53 -6.96 15.89 5.38 0.09 -6.87 16 21 C 0.14 1.20 6.62 -82.63 -0.55 0.65 16 22 C -0.17 -1.15 9.72 -38.91 -0.38 -1.53 16 23 C 0.15 0.84 11.31 -17.20 -0.19 0.65 16 24 N -0.51 -3.52 10.42 -14.60 -0.15 -3.67 16 25 C 0.29 1.87 12.27 -92.26 -1.13 0.73 16 26 N -0.49 -3.83 6.29 -11.14 -0.07 -3.90 16 27 C 0.08 0.66 5.96 -3.49 -0.02 0.64 16 28 C -0.17 -1.74 4.67 -26.39 -0.12 -1.86 16 29 H 0.06 0.89 6.36 -51.93 -0.33 0.56 16 30 H 0.09 1.84 5.82 -51.93 -0.30 1.53 16 31 H 0.02 0.24 6.31 -51.93 -0.33 -0.09 16 32 H 0.09 1.26 8.00 -51.93 -0.42 0.85 16 33 H 0.05 0.70 6.90 -51.93 -0.36 0.35 16 34 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.07 0.81 6.50 -51.93 -0.34 0.47 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.96 7.00 -51.93 -0.36 0.60 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.16 0.93 7.76 -52.49 -0.41 0.52 16 42 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 43 H 0.20 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.15 1.22 3.99 -82.92 -0.33 0.89 16 46 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 47 H 0.08 0.76 6.69 -51.93 -0.35 0.42 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -34.93 371.75 -8.85 -43.78 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.18 Total: 9.87 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.64 Total: 9.53 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.08 Total: -61.73 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.16 Total: -21.55 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.93 -8.85 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755534774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds