Wall clock time and date at job start Wed Apr 1 2020 06:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99946 * 2 1 4 4 C 1.50700 * 109.47095 * 66.04450 * 3 2 1 5 5 O 1.21296 * 120.00003 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.37094 * 119.99709 * 180.02562 * 6 4 3 8 8 H 1.07999 * 120.00736 * 359.97438 * 7 6 4 9 9 C 1.38958 * 119.99418 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99591 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00130 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46846 * 90.00244 * 11 9 7 13 13 H 1.48498 * 109.46886 * 210.00098 * 11 9 7 14 14 H 1.48494 * 109.47269 * 330.00309 * 11 9 7 15 15 C 1.46902 * 110.99898 * 236.04306 * 2 1 3 16 16 C 1.53036 * 109.46435 * 298.95588 * 15 2 1 17 17 C 1.53188 * 109.31372 * 181.37212 * 16 15 2 18 18 N 1.46918 * 108.77621 * 305.36525 * 17 16 15 19 19 C 1.34779 * 120.63221 * 233.58421 * 18 17 16 20 20 O 1.21484 * 119.99720 * 7.47521 * 19 18 17 21 21 C 1.48456 * 120.00252 * 187.46881 * 19 18 17 22 22 C 1.39535 * 120.54831 * 188.92988 * 21 19 18 23 23 C 1.38758 * 118.26315 * 180.02562 * 22 21 19 24 24 N 1.32209 * 119.14520 * 0.02562 * 23 22 21 25 25 C 1.31877 * 121.03861 * 0.02562 * 24 23 22 26 26 N 1.31583 * 121.91798 * 359.97438 * 25 24 23 27 27 C 1.46926 * 118.74052 * 53.85732 * 18 17 16 28 28 C 1.53042 * 109.44607 * 59.01868 * 15 2 1 29 29 H 1.09005 * 109.46535 * 183.95302 * 1 2 3 30 30 H 1.08995 * 109.46769 * 303.95070 * 1 2 3 31 31 H 1.08993 * 109.46955 * 63.95813 * 1 2 3 32 32 H 1.08996 * 109.46877 * 186.04588 * 3 2 1 33 33 H 1.08993 * 109.46769 * 306.04432 * 3 2 1 34 34 H 0.97001 * 119.99636 * 0.02562 * 6 4 3 35 35 H 0.96997 * 119.99778 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.45696 * 178.97974 * 15 2 1 37 37 H 1.08998 * 109.50086 * 61.41553 * 16 15 2 38 38 H 1.09001 * 109.49649 * 301.32119 * 16 15 2 39 39 H 1.09000 * 109.58558 * 185.57192 * 17 16 15 40 40 H 1.09007 * 109.70509 * 65.22537 * 17 16 15 41 41 H 1.07995 * 120.87181 * 0.05489 * 22 21 19 42 42 H 1.08000 * 120.42930 * 179.73229 * 23 22 21 43 43 H 1.08004 * 119.04182 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.58588 * 65.92966 * 27 18 17 45 45 H 1.09006 * 109.58820 * 186.35192 * 27 18 17 46 46 H 1.09004 * 109.49763 * 298.56766 * 28 15 2 47 47 H 1.09000 * 109.49664 * 58.66700 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4452 2.1411 6 7 2.0189 3.3199 1.5237 7 6 1.6931 3.9343 2.7052 8 1 1.1301 3.3988 3.4552 9 6 2.0864 5.2467 2.9372 10 7 1.7738 5.8359 4.0694 11 14 3.0596 6.1733 1.6397 12 1 2.1230 6.8774 0.7274 13 1 3.9463 7.1646 2.3001 14 1 3.8831 5.2147 0.8600 15 6 1.9955 -0.7661 -1.1376 16 6 1.5261 -2.2190 -1.0349 17 6 2.1049 -3.0223 -2.2038 18 7 1.7388 -2.3574 -3.4617 19 6 1.1178 -3.0401 -4.4439 20 8 0.7340 -4.1755 -4.2455 21 6 0.9027 -2.4047 -5.7683 22 6 0.1032 -3.0232 -6.7302 23 6 -0.0652 -2.3875 -7.9521 24 7 0.5330 -1.2274 -8.1622 25 6 1.2831 -0.6707 -7.2313 26 7 1.4709 -1.2369 -6.0584 27 6 2.0679 -0.9355 -3.6311 28 6 1.4845 -0.1542 -2.4440 29 1 -0.3632 -1.0253 0.0709 30 1 -0.3633 0.5739 0.8524 31 1 -0.3633 0.4511 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5612 1.9272 -0.8309 34 1 2.5242 3.8010 0.8499 35 1 2.0486 6.7519 4.2315 36 1 3.0849 -0.7345 -1.1235 37 1 0.4373 -2.2532 -1.0737 38 1 1.8706 -2.6470 -0.0935 39 1 1.6951 -4.0323 -2.1915 40 1 3.1906 -3.0675 -2.1168 41 1 -0.3726 -3.9715 -6.5288 42 1 -0.6732 -2.8370 -8.7233 43 1 1.7571 0.2777 -7.4375 44 1 3.1506 -0.8116 -3.6570 45 1 1.6337 -0.5681 -4.5610 46 1 0.3961 -0.2078 -2.4696 47 1 1.7995 0.8875 -2.5055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755534774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:37 Heat of formation + Delta-G solvation = -1.840852 kcal Electronic energy + Delta-G solvation = -30444.814083 eV Core-core repulsion = 26242.347134 eV Total energy + Delta-G solvation = -4202.466949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.45925 -41.13992 -40.41774 -39.20668 -36.94671 -35.89813 -35.12322 -33.73908 -33.19445 -32.55679 -31.92009 -29.54944 -27.62772 -26.90561 -25.78055 -25.51583 -24.29889 -23.84664 -21.88378 -21.20278 -20.43132 -20.08117 -19.05320 -18.48472 -17.93864 -17.17854 -16.87647 -16.78349 -16.75311 -16.49646 -16.29387 -16.20010 -15.61707 -15.49280 -15.17947 -15.17238 -14.92826 -14.88545 -14.60101 -14.31941 -14.12332 -13.96046 -13.65672 -13.12942 -13.08917 -12.87635 -12.72377 -12.45310 -12.37164 -12.20847 -12.00524 -11.96213 -11.86568 -11.62622 -11.57043 -11.48547 -11.37565 -10.84940 -10.35992 -10.21394 -10.03856 -9.78511 -9.06299 -8.39431 -6.00072 -0.64861 -0.14319 1.31433 1.37038 1.46149 1.55997 1.72398 1.98877 2.24843 2.61455 2.67896 2.76668 3.16854 3.17607 3.26470 3.31925 3.68734 3.75990 3.90690 4.02472 4.04993 4.08948 4.20950 4.27733 4.36022 4.40804 4.45481 4.51235 4.52626 4.59058 4.64407 4.72290 4.81146 4.90328 4.94857 5.03913 5.07785 5.19903 5.31129 5.34597 5.55285 5.62666 5.69245 5.92813 6.04118 6.20188 6.23372 6.62314 6.77117 6.91130 6.92715 7.42588 8.00804 8.78343 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002261 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.204369 B =12383.601096 C =13580.152002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.055 3.945 4 C 0.451 3.549 5 O -0.607 6.607 6 N -0.593 5.593 7 C -0.326 4.326 8 H 0.053 0.947 9 C -0.018 4.018 10 N -0.936 5.936 11 Si 0.966 3.034 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.228 1.228 15 C 0.086 3.914 16 C -0.118 4.118 17 C 0.114 3.886 18 N -0.585 5.585 19 C 0.562 3.438 20 O -0.562 6.562 21 C 0.115 3.885 22 C -0.172 4.172 23 C 0.163 3.837 24 N -0.520 5.520 25 C 0.289 3.711 26 N -0.494 5.494 27 C 0.080 3.920 28 C -0.165 4.165 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.033 0.967 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.389 0.611 35 H 0.278 0.722 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.167 0.833 42 H 0.212 0.788 43 H 0.233 0.767 44 H 0.084 0.916 45 H 0.151 0.849 46 H 0.055 0.945 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -14.695 -30.703 34.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.254 5.254 3 C -0.076 4.076 4 C 0.239 3.761 5 O -0.491 6.491 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.216 4.216 10 N -0.577 5.577 11 Si 0.785 3.215 12 H -0.182 1.182 13 H -0.202 1.202 14 H -0.151 1.151 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.008 4.008 18 N -0.315 5.315 19 C 0.348 3.652 20 O -0.441 6.441 21 C -0.031 4.031 22 C -0.194 4.194 23 C -0.004 4.004 24 N -0.234 5.234 25 C 0.002 3.998 26 N -0.211 5.211 27 C -0.042 4.042 28 C -0.205 4.205 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.184 0.816 42 H 0.229 0.771 43 H 0.249 0.751 44 H 0.103 0.897 45 H 0.167 0.833 46 H 0.073 0.927 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.887 -14.900 -29.574 33.241 hybrid contribution -0.495 0.461 0.030 0.677 sum 2.391 -14.438 -29.544 32.971 Atomic orbital electron populations 1.22399 0.87673 1.01986 1.00111 1.61744 1.08365 1.12384 1.42926 1.21830 1.02784 0.89736 0.93251 1.20963 0.82860 0.81734 0.90592 1.90523 1.44215 1.65149 1.49209 1.42034 1.51821 1.12686 1.16937 1.18979 1.34620 0.96952 0.94941 0.92856 1.26147 0.98761 0.97014 0.99714 1.69813 1.47405 1.14316 1.26198 0.85355 0.78869 0.79036 0.78204 1.18179 1.20182 1.15148 1.21887 1.00404 0.92858 0.87052 1.21880 1.00725 0.94461 0.98592 1.21737 1.00981 0.96813 0.81297 1.48145 1.55822 1.12425 1.15109 1.18168 0.78058 0.85103 0.83821 1.90773 1.51825 1.19489 1.81972 1.21553 0.94763 0.91969 0.94817 1.23157 0.98488 1.03145 0.94648 1.23983 0.92412 0.88820 0.95232 1.68485 1.08571 1.11635 1.34676 1.25838 0.90827 0.99967 0.83143 1.68314 1.22654 1.08925 1.21225 1.23156 1.02072 0.77343 1.01602 1.22721 1.01032 1.01105 0.95654 0.91196 0.93110 0.94833 0.86096 0.90268 0.77499 0.91227 0.88276 0.92606 0.89747 0.89647 0.88917 0.81565 0.77125 0.75096 0.89746 0.83273 0.92658 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.46 127.69 1.08 1.90 16 2 N -0.53 -15.50 4.49 -901.47 -4.05 -19.55 16 3 C 0.05 1.63 4.89 85.56 0.42 2.05 16 4 C 0.45 20.15 7.47 87.66 0.66 20.80 16 5 O -0.61 -33.54 13.91 -3.08 -0.04 -33.58 16 6 N -0.59 -27.66 5.09 -306.97 -1.56 -29.22 16 7 C -0.33 -19.05 10.16 84.04 0.85 -18.19 16 8 H 0.05 3.74 7.39 -2.91 -0.02 3.71 16 9 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 10 N -0.94 -56.60 13.96 21.67 0.30 -56.30 16 11 Si 0.97 38.30 27.74 68.60 1.90 40.21 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.23 -7.49 6.52 99.48 0.65 -6.85 16 15 C 0.09 1.74 2.19 44.94 0.10 1.84 16 16 C -0.12 -2.36 5.11 30.67 0.16 -2.20 16 17 C 0.11 1.99 6.44 86.36 0.56 2.55 16 18 N -0.58 -10.58 2.97 -820.78 -2.43 -13.01 16 19 C 0.56 11.69 7.67 86.97 0.67 12.36 16 20 O -0.56 -14.80 15.89 -3.67 -0.06 -14.86 16 21 C 0.11 1.87 6.62 41.99 0.28 2.14 16 22 C -0.17 -2.06 9.72 22.71 0.22 -1.84 16 23 C 0.16 1.36 11.31 84.76 0.96 2.31 16 24 N -0.52 -5.79 10.42 -200.09 -2.09 -7.88 16 25 C 0.29 2.89 12.27 180.92 2.22 5.11 16 26 N -0.49 -6.57 6.29 -189.15 -1.19 -7.76 16 27 C 0.08 1.16 5.96 86.51 0.52 1.68 16 28 C -0.17 -2.80 4.67 30.82 0.14 -2.65 16 29 H 0.07 2.01 6.36 -2.38 -0.02 2.00 16 30 H 0.05 2.05 5.82 -2.39 -0.01 2.03 16 31 H 0.03 0.91 6.31 -2.39 -0.02 0.90 16 32 H 0.12 2.88 8.00 -2.39 -0.02 2.86 16 33 H 0.08 1.93 6.90 -2.39 -0.02 1.92 16 34 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 35 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.10 1.76 8.03 -2.39 -0.02 1.74 16 37 H 0.06 1.27 6.50 -2.39 -0.02 1.26 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.69 7.00 -2.39 -0.02 1.68 16 40 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.17 1.75 7.76 -2.91 -0.02 1.73 16 42 H 0.21 0.14 8.06 -2.91 -0.02 0.11 16 43 H 0.23 0.70 8.06 -2.91 -0.02 0.68 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.15 2.10 3.99 -63.57 -0.25 1.85 16 46 H 0.05 1.11 6.47 -2.38 -0.02 1.09 16 47 H 0.09 1.34 6.69 -2.39 -0.02 1.32 16 Total: -1.00 -83.14 371.75 0.27 -82.87 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.19 Total: 31.76 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 9.29 Total: 27.33 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -11.02 Total: -133.71 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -0.10 Total: -48.45 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.90 Total: 40.21 kcal Total: -83.14 0.27 -82.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755534774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.030 kcal (2) G-P(sol) polarization free energy of solvation -83.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds