Wall clock time and date at job start Wed Apr 1 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36931 * 120.00301 * 2 1 4 4 H 1.07995 * 120.00470 * 209.15498 * 3 2 1 5 5 C 1.38821 * 119.99884 * 29.15521 * 3 2 1 6 6 N 1.31615 * 119.99595 * 7.70674 * 5 3 2 7 7 Si 1.86800 * 120.00190 * 187.71209 * 5 3 2 8 8 H 1.48501 * 109.47101 * 89.99575 * 7 5 3 9 9 H 1.48493 * 109.46959 * 209.99967 * 7 5 3 10 10 H 1.48501 * 109.46904 * 329.99765 * 7 5 3 11 11 C 1.46507 * 119.99924 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47062 * 89.99438 * 11 2 1 13 13 H 1.08999 * 109.47231 * 60.00438 * 12 11 2 14 14 O 1.42890 * 109.47437 * 299.99943 * 12 11 2 15 15 C 1.53007 * 109.46775 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46987 * 185.00169 * 15 12 11 17 17 C 1.46494 * 119.99798 * 270.00336 * 16 15 12 18 18 C 1.34775 * 119.99892 * 90.00568 * 16 15 12 19 19 O 1.21588 * 119.99577 * 355.32842 * 18 16 15 20 20 C 1.47537 * 119.99891 * 175.33341 * 18 16 15 21 21 C 1.39407 * 120.75670 * 56.42164 * 20 18 16 22 22 N 1.31912 * 121.01986 * 179.72561 * 21 20 18 23 23 C 1.31802 * 122.59326 * 0.54524 * 22 21 20 24 24 C 1.39433 * 120.63522 * 359.74988 * 23 22 21 25 25 N 1.35708 * 134.43111 * 179.97438 * 24 23 22 26 26 C 1.30125 * 109.49687 * 179.97438 * 25 24 23 27 27 N 1.36258 * 110.06552 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.29706 * 179.97438 * 27 26 25 29 29 C 1.36922 * 107.39937 * 359.97438 * 27 26 25 30 30 H 1.09005 * 109.47054 * 265.57391 * 1 2 3 31 31 H 1.09004 * 109.47639 * 25.57089 * 1 2 3 32 32 H 1.09002 * 109.47827 * 145.57239 * 1 2 3 33 33 H 0.96998 * 119.99916 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46740 * 329.99575 * 11 2 1 35 35 H 1.08994 * 109.46802 * 209.99906 * 11 2 1 36 36 H 0.96703 * 114.00358 * 299.99762 * 14 12 11 37 37 H 1.08996 * 109.47355 * 305.00081 * 15 12 11 38 38 H 1.09006 * 109.46885 * 65.00453 * 15 12 11 39 39 H 1.09003 * 109.47622 * 94.86625 * 17 16 15 40 40 H 1.09008 * 109.47336 * 214.86880 * 17 16 15 41 41 H 1.08999 * 109.47623 * 334.87031 * 17 16 15 42 42 H 1.08002 * 119.48767 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.67867 * 179.72337 * 23 22 21 44 44 H 1.08004 * 124.96659 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47139 * 273.01874 * 28 27 26 46 46 H 1.09001 * 109.47197 * 33.02278 * 28 27 26 47 47 H 1.09004 * 109.47000 * 153.01808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1270 1.2451 -0.4556 5 6 1.5875 2.3119 0.5857 6 7 0.4692 2.2079 1.2719 7 14 2.4180 3.9747 0.3997 8 1 1.9004 4.6534 -0.8155 9 1 2.1287 4.8088 1.5938 10 1 3.8852 3.7837 0.2730 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 3.0414 -0.9501 -1.9568 14 8 1.2037 -1.8805 -2.1169 15 6 3.2179 -3.0346 -1.4438 16 7 3.5662 -3.3968 -2.8199 17 6 2.6460 -4.2101 -3.6185 18 6 4.7332 -2.9817 -3.3511 19 8 5.4578 -2.2370 -2.7196 20 6 5.1314 -3.4308 -4.6989 21 6 4.3020 -3.2109 -5.7976 22 7 4.6553 -3.6055 -7.0058 23 6 5.7904 -4.2313 -7.2447 24 6 6.6839 -4.5024 -6.2092 25 7 7.8947 -5.1106 -6.1340 26 6 8.3103 -5.0997 -4.9009 27 7 7.3933 -4.4829 -4.1039 28 6 7.5011 -4.2755 -2.6577 29 6 6.3525 -4.0927 -4.9034 30 1 -0.3633 -0.0793 1.0246 31 1 -0.3634 0.9270 -0.4436 32 1 -0.3635 -0.8476 -0.5810 33 1 0.0762 2.9947 1.6809 34 1 1.6083 -2.0286 0.5130 35 1 3.1498 -1.1386 0.5133 36 1 0.6266 -2.5434 -1.7136 37 1 4.1286 -2.9282 -0.8545 38 1 2.5932 -3.8154 -1.0096 39 1 2.0160 -3.5580 -4.2234 40 1 3.2174 -4.8705 -4.2709 41 1 2.0198 -4.8072 -2.9556 42 1 3.3575 -2.7061 -5.6581 43 1 6.0304 -4.5375 -8.2522 44 1 9.2458 -5.5177 -4.5594 45 1 7.1125 -5.1497 -2.1353 46 1 8.5470 -4.1268 -2.3889 47 1 6.9242 -3.3957 -2.3728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755802100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:52 Heat of formation + Delta-G solvation = 44.471581 kcal Electronic energy + Delta-G solvation = -31146.154226 eV Core-core repulsion = 26945.695535 eV Total energy + Delta-G solvation = -4200.458691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.82354 -40.19570 -38.68818 -37.51723 -35.49081 -34.60046 -34.52715 -32.17759 -31.35679 -30.44732 -29.64366 -27.59078 -27.05657 -26.13598 -25.63728 -24.38171 -23.28982 -22.50853 -21.46846 -20.63034 -19.51633 -18.21393 -17.90112 -17.31999 -16.83885 -16.53162 -16.22736 -16.11713 -15.68832 -15.19584 -14.98613 -14.81462 -14.60726 -14.32363 -14.17852 -13.82633 -13.68673 -13.35261 -13.17741 -12.98611 -12.92252 -12.85405 -12.54353 -12.18601 -11.88692 -11.55201 -11.15334 -10.92492 -10.89894 -10.79975 -10.67666 -10.56070 -10.49649 -10.37376 -10.07711 -9.90975 -9.80238 -9.65472 -9.30792 -8.73119 -8.61752 -8.41236 -6.58450 -5.72031 -3.22053 0.18387 1.04868 2.12806 2.18389 2.47037 2.79263 3.40514 3.46420 3.48464 3.50142 3.73086 3.95101 4.11609 4.36469 4.38907 4.50772 4.63360 4.69782 4.81807 4.84693 4.88123 5.05392 5.08357 5.21560 5.29563 5.33420 5.39436 5.44997 5.59763 5.66391 5.72572 5.85130 5.88878 5.91562 6.00523 6.11277 6.37071 6.57421 6.59967 6.73047 6.90403 7.13247 7.25899 7.43467 7.63988 7.72490 7.84644 7.90696 8.14062 8.47428 9.27728 9.88414 10.40115 11.33750 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.002625 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.913145 B =10663.843473 C =11060.364536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.590 5.590 3 C -0.256 4.256 4 H 0.063 0.937 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.127 3.873 12 C 0.070 3.930 13 H 0.098 0.902 14 O -0.548 6.548 15 C 0.084 3.916 16 N -0.594 5.594 17 C 0.079 3.921 18 C 0.562 3.438 19 O -0.527 6.527 20 C -0.165 4.165 21 C 0.137 3.863 22 N -0.485 5.485 23 C 0.191 3.809 24 C -0.014 4.014 25 N -0.478 5.478 26 C 0.262 3.738 27 N -0.478 5.478 28 C 0.049 3.951 29 C 0.114 3.886 30 H 0.013 0.987 31 H 0.050 0.950 32 H -0.001 1.001 33 H 0.252 0.748 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.358 0.642 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.220 0.780 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.577 -20.759 -10.505 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.311 5.311 3 C -0.386 4.386 4 H 0.081 0.919 5 C -0.192 4.192 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.007 3.993 13 H 0.116 0.884 14 O -0.351 6.351 15 C -0.039 4.039 16 N -0.325 5.325 17 C -0.064 4.064 18 C 0.349 3.651 19 O -0.405 6.405 20 C -0.174 4.174 21 C -0.015 4.015 22 N -0.194 5.194 23 C 0.025 3.975 24 C -0.135 4.135 25 N -0.197 5.197 26 C -0.024 4.024 27 N -0.166 5.166 28 C -0.092 4.092 29 C -0.006 4.006 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.203 0.797 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.187 0.813 43 H 0.187 0.813 44 H 0.237 0.763 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.894 -19.879 -11.614 25.470 hybrid contribution 0.450 0.674 1.843 2.014 sum 11.344 -19.205 -9.771 24.351 Atomic orbital electron populations 1.20727 0.82585 0.97418 0.96953 1.43628 1.01764 1.00099 1.85655 1.19153 1.01897 0.87127 1.30433 0.91885 1.25146 0.97865 0.98915 0.97314 1.70033 1.20402 1.28379 1.36343 0.86262 0.79185 0.84052 0.77108 1.21390 1.21667 1.20389 1.21276 0.96994 0.89641 0.92348 1.23289 0.84229 0.94099 0.97682 0.88392 1.86646 1.29060 1.63243 1.56175 1.22477 1.01498 0.98719 0.81239 1.47725 1.18325 1.51752 1.14714 1.21923 0.93338 0.94916 0.96222 1.18026 0.81367 0.80492 0.85237 1.90730 1.52823 1.34866 1.62126 1.19802 0.94432 1.06774 0.96359 1.22835 0.98140 0.94531 0.85946 1.67741 1.16861 1.12027 1.22804 1.22308 0.86549 0.90667 0.98010 1.20127 0.95560 1.04692 0.93130 1.70485 1.09859 1.21009 1.18302 1.25602 0.95877 0.95640 0.85296 1.45205 1.15633 1.46175 1.09584 1.22668 1.05598 1.05608 0.75338 1.18640 0.90431 0.99468 0.92015 0.96839 0.93098 0.98267 0.93742 0.94473 0.92648 0.79691 0.89231 0.90265 0.91267 0.91778 0.90684 0.81279 0.81328 0.76324 0.90687 0.89073 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.14 8.77 59.84 0.52 4.67 16 2 N -0.59 -14.86 2.83 -181.12 -0.51 -15.37 16 3 C -0.26 -7.22 9.60 -15.06 -0.14 -7.37 16 4 H 0.06 1.78 7.84 -52.49 -0.41 1.37 16 5 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 6 N -0.91 -26.88 10.87 55.49 0.60 -26.28 16 7 Si 0.90 22.48 29.56 -169.99 -5.03 17.45 16 8 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.13 2.47 5.38 -4.04 -0.02 2.45 16 12 C 0.07 1.17 3.48 -26.73 -0.09 1.08 16 13 H 0.10 2.05 8.14 -51.93 -0.42 1.62 16 14 O -0.55 -8.88 11.55 -35.23 -0.41 -9.28 16 15 C 0.08 1.04 5.07 -4.04 -0.02 1.02 16 16 N -0.59 -7.02 2.84 -182.80 -0.52 -7.54 16 17 C 0.08 0.70 8.87 59.84 0.53 1.23 16 18 C 0.56 7.74 6.43 -12.47 -0.08 7.66 16 19 O -0.53 -8.87 13.89 5.29 0.07 -8.80 16 20 C -0.16 -2.07 4.63 -104.86 -0.49 -2.56 16 21 C 0.14 1.60 9.21 -17.08 -0.16 1.44 16 22 N -0.48 -5.64 10.30 -12.64 -0.13 -5.77 16 23 C 0.19 2.04 11.25 -17.12 -0.19 1.85 16 24 C -0.01 -0.17 7.27 -84.74 -0.62 -0.79 16 25 N -0.48 -5.28 11.28 -12.01 -0.14 -5.42 16 26 C 0.26 2.19 12.51 -89.56 -1.12 1.07 16 27 N -0.48 -4.76 3.18 -122.87 -0.39 -5.16 16 28 C 0.05 0.39 10.83 59.85 0.65 1.04 16 29 C 0.11 1.39 6.83 -83.81 -0.57 0.82 16 30 H 0.01 0.35 7.77 -51.93 -0.40 -0.05 16 31 H 0.05 1.39 6.98 -51.93 -0.36 1.03 16 32 H 0.00 -0.02 6.81 -51.93 -0.35 -0.38 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 35 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 36 H 0.36 4.46 8.81 45.56 0.40 4.86 16 37 H 0.09 1.17 7.49 -51.93 -0.39 0.78 16 38 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 39 H 0.07 0.63 7.47 -51.93 -0.39 0.24 16 40 H 0.06 0.53 6.51 -51.92 -0.34 0.19 16 41 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 42 H 0.17 1.78 7.08 -52.49 -0.37 1.41 16 43 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.22 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.12 1.36 4.42 -51.93 -0.23 1.13 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -36.50 384.74 -8.28 -44.78 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.75 Total: 1.89 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -1.89 Total: 13.69 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.08 Total: -65.52 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.33 Total: -18.08 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.50 -8.28 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds