Wall clock time and date at job start Wed Apr 1 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36931 * 120.00301 * 2 1 4 4 H 1.07995 * 120.00470 * 209.15498 * 3 2 1 5 5 C 1.38821 * 119.99884 * 29.15521 * 3 2 1 6 6 N 1.31615 * 119.99595 * 7.70674 * 5 3 2 7 7 Si 1.86800 * 120.00190 * 187.71209 * 5 3 2 8 8 H 1.48501 * 109.47101 * 89.99575 * 7 5 3 9 9 H 1.48493 * 109.46959 * 209.99967 * 7 5 3 10 10 H 1.48501 * 109.46904 * 329.99765 * 7 5 3 11 11 C 1.46507 * 119.99924 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47062 * 89.99438 * 11 2 1 13 13 H 1.08999 * 109.47231 * 60.00438 * 12 11 2 14 14 O 1.42890 * 109.47437 * 299.99943 * 12 11 2 15 15 C 1.53007 * 109.46775 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46987 * 185.00169 * 15 12 11 17 17 C 1.46494 * 119.99798 * 270.00336 * 16 15 12 18 18 C 1.34775 * 119.99892 * 90.00568 * 16 15 12 19 19 O 1.21588 * 119.99577 * 355.32842 * 18 16 15 20 20 C 1.47537 * 119.99891 * 175.33341 * 18 16 15 21 21 C 1.39407 * 120.75670 * 56.42164 * 20 18 16 22 22 N 1.31912 * 121.01986 * 179.72561 * 21 20 18 23 23 C 1.31802 * 122.59326 * 0.54524 * 22 21 20 24 24 C 1.39433 * 120.63522 * 359.74988 * 23 22 21 25 25 N 1.35708 * 134.43111 * 179.97438 * 24 23 22 26 26 C 1.30125 * 109.49687 * 179.97438 * 25 24 23 27 27 N 1.36258 * 110.06552 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.29706 * 179.97438 * 27 26 25 29 29 C 1.36922 * 107.39937 * 359.97438 * 27 26 25 30 30 H 1.09005 * 109.47054 * 265.57391 * 1 2 3 31 31 H 1.09004 * 109.47639 * 25.57089 * 1 2 3 32 32 H 1.09002 * 109.47827 * 145.57239 * 1 2 3 33 33 H 0.96998 * 119.99916 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46740 * 329.99575 * 11 2 1 35 35 H 1.08994 * 109.46802 * 209.99906 * 11 2 1 36 36 H 0.96703 * 114.00358 * 299.99762 * 14 12 11 37 37 H 1.08996 * 109.47355 * 305.00081 * 15 12 11 38 38 H 1.09006 * 109.46885 * 65.00453 * 15 12 11 39 39 H 1.09003 * 109.47622 * 94.86625 * 17 16 15 40 40 H 1.09008 * 109.47336 * 214.86880 * 17 16 15 41 41 H 1.08999 * 109.47623 * 334.87031 * 17 16 15 42 42 H 1.08002 * 119.48767 * 359.97438 * 21 20 18 43 43 H 1.08005 * 119.67867 * 179.72337 * 23 22 21 44 44 H 1.08004 * 124.96659 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47139 * 273.01874 * 28 27 26 46 46 H 1.09001 * 109.47197 * 33.02278 * 28 27 26 47 47 H 1.09004 * 109.47000 * 153.01808 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1270 1.2451 -0.4556 5 6 1.5875 2.3119 0.5857 6 7 0.4692 2.2079 1.2719 7 14 2.4180 3.9747 0.3997 8 1 1.9004 4.6534 -0.8155 9 1 2.1287 4.8088 1.5938 10 1 3.8852 3.7837 0.2730 11 6 2.1974 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 1 3.0414 -0.9501 -1.9568 14 8 1.2037 -1.8805 -2.1169 15 6 3.2179 -3.0346 -1.4438 16 7 3.5662 -3.3968 -2.8199 17 6 2.6460 -4.2101 -3.6185 18 6 4.7332 -2.9817 -3.3511 19 8 5.4578 -2.2370 -2.7196 20 6 5.1314 -3.4308 -4.6989 21 6 4.3020 -3.2109 -5.7976 22 7 4.6553 -3.6055 -7.0058 23 6 5.7904 -4.2313 -7.2447 24 6 6.6839 -4.5024 -6.2092 25 7 7.8947 -5.1106 -6.1340 26 6 8.3103 -5.0997 -4.9009 27 7 7.3933 -4.4829 -4.1039 28 6 7.5011 -4.2755 -2.6577 29 6 6.3525 -4.0927 -4.9034 30 1 -0.3633 -0.0793 1.0246 31 1 -0.3634 0.9270 -0.4436 32 1 -0.3635 -0.8476 -0.5810 33 1 0.0762 2.9947 1.6809 34 1 1.6083 -2.0286 0.5130 35 1 3.1498 -1.1386 0.5133 36 1 0.6266 -2.5434 -1.7136 37 1 4.1286 -2.9282 -0.8545 38 1 2.5932 -3.8154 -1.0096 39 1 2.0160 -3.5580 -4.2234 40 1 3.2174 -4.8705 -4.2709 41 1 2.0198 -4.8072 -2.9556 42 1 3.3575 -2.7061 -5.6581 43 1 6.0304 -4.5375 -8.2522 44 1 9.2458 -5.5177 -4.5594 45 1 7.1125 -5.1497 -2.1353 46 1 8.5470 -4.1268 -2.3889 47 1 6.9242 -3.3957 -2.3728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755802100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:51 Heat of formation + Delta-G solvation = 17.878259 kcal Electronic energy + Delta-G solvation = -31147.307399 eV Core-core repulsion = 26945.695535 eV Total energy + Delta-G solvation = -4201.611864 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.59590 -41.19608 -39.56198 -38.89166 -36.89806 -36.04289 -35.32838 -33.36496 -32.98536 -31.42519 -30.85748 -28.36294 -28.08154 -27.79863 -27.19333 -25.34624 -24.11895 -23.88396 -22.52435 -22.23646 -20.44472 -19.08052 -18.77794 -18.67987 -18.15533 -17.67746 -17.33222 -16.96473 -16.78195 -16.66018 -16.24468 -16.16899 -15.67084 -15.42126 -15.23362 -14.96894 -14.76350 -14.62551 -14.54609 -14.22375 -13.75233 -13.69154 -13.58868 -13.32909 -13.04807 -12.96838 -12.86045 -12.65839 -12.51059 -12.23698 -12.09716 -11.99662 -11.85290 -11.76029 -11.61455 -11.39695 -11.25138 -10.66442 -10.59228 -10.11796 -9.71260 -9.44916 -8.60083 -7.86801 -5.38990 -0.63787 0.19579 1.27338 1.40905 1.42345 1.47258 1.51124 1.61598 1.85699 2.46837 2.64936 2.98741 3.16487 3.26805 3.35886 3.54261 3.56139 3.70107 3.74190 3.90172 4.02191 4.06184 4.16626 4.24669 4.27408 4.32591 4.48942 4.52113 4.55835 4.63778 4.66701 4.75581 4.90933 4.92255 4.96568 5.01922 5.12697 5.22744 5.30353 5.40275 5.44780 5.59090 5.70425 5.92128 6.17348 6.34979 6.50878 6.80140 6.91110 7.04042 7.15527 7.87431 8.30859 9.15738 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.002625 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.913145 B =10663.843473 C =11060.364536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.265 4.265 4 H 0.053 0.947 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.963 3.037 8 H -0.287 1.287 9 H -0.288 1.288 10 H -0.273 1.273 11 C 0.123 3.877 12 C 0.092 3.908 13 H 0.049 0.951 14 O -0.559 6.559 15 C 0.095 3.905 16 N -0.590 5.590 17 C 0.077 3.923 18 C 0.559 3.441 19 O -0.566 6.566 20 C -0.176 4.176 21 C 0.135 3.865 22 N -0.496 5.496 23 C 0.190 3.810 24 C -0.027 4.027 25 N -0.504 5.504 26 C 0.277 3.723 27 N -0.482 5.482 28 C 0.049 3.951 29 C 0.093 3.907 30 H -0.007 1.007 31 H 0.014 0.986 32 H 0.038 0.962 33 H 0.250 0.750 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.379 0.621 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.175 0.825 43 H 0.194 0.806 44 H 0.268 0.732 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.500 -23.157 -10.904 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.333 5.333 3 C -0.395 4.395 4 H 0.071 0.929 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.791 3.209 8 H -0.214 1.214 9 H -0.214 1.214 10 H -0.198 1.198 11 C -0.004 4.004 12 C 0.029 3.971 13 H 0.067 0.933 14 O -0.366 6.366 15 C -0.028 4.028 16 N -0.319 5.319 17 C -0.065 4.065 18 C 0.347 3.653 19 O -0.447 6.447 20 C -0.185 4.185 21 C -0.017 4.017 22 N -0.205 5.205 23 C 0.024 3.976 24 C -0.147 4.147 25 N -0.223 5.223 26 C -0.008 4.008 27 N -0.170 5.170 28 C -0.091 4.091 29 C -0.027 4.027 30 H 0.011 0.989 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.227 0.773 37 H 0.100 0.900 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.192 0.808 43 H 0.211 0.789 44 H 0.284 0.716 45 H 0.110 0.890 46 H 0.139 0.861 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.811 -22.339 -12.028 27.986 hybrid contribution 0.211 1.315 1.929 2.344 sum 12.021 -21.024 -10.099 26.240 Atomic orbital electron populations 1.20476 0.82592 0.97088 0.95976 1.43857 1.02122 1.01209 1.86096 1.19353 1.01658 0.88848 1.29681 0.92883 1.25834 0.98690 1.02043 0.97627 1.70167 1.21563 1.28883 1.37427 0.85339 0.78471 0.80221 0.76865 1.21381 1.21356 1.19782 1.21495 0.96393 0.88092 0.94401 1.22698 0.84626 0.95216 0.94579 0.93304 1.86607 1.29215 1.64403 1.56337 1.22291 1.01199 0.97435 0.81904 1.47765 1.18155 1.51351 1.14665 1.22104 0.93032 0.94761 0.96601 1.18273 0.81559 0.79954 0.85478 1.90716 1.54150 1.36658 1.63190 1.19736 0.95175 1.07783 0.95788 1.22909 0.98310 0.94499 0.85936 1.67785 1.17482 1.12641 1.22639 1.22716 0.85997 0.89847 0.98990 1.20377 0.96174 1.04943 0.93237 1.70498 1.09761 1.22221 1.19825 1.26590 0.96375 0.93538 0.84296 1.45459 1.15275 1.45969 1.10257 1.22721 1.07064 1.04832 0.74481 1.18880 0.90978 0.99966 0.92892 0.98858 0.96728 0.94348 0.94119 0.91291 0.93688 0.77294 0.90019 0.86032 0.91516 0.91241 0.87911 0.80828 0.78945 0.71632 0.89040 0.86098 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 8.77 127.77 1.12 10.18 16 2 N -0.61 -30.90 2.83 -726.94 -2.06 -32.96 16 3 C -0.26 -15.23 9.60 84.04 0.81 -14.43 16 4 H 0.05 3.09 7.84 -2.91 -0.02 3.07 16 5 C -0.05 -2.70 5.13 84.86 0.44 -2.26 16 6 N -0.93 -56.49 10.87 21.65 0.24 -56.26 16 7 Si 0.96 47.08 29.56 68.60 2.03 49.10 16 8 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 11 C 0.12 4.71 5.38 86.38 0.46 5.17 16 12 C 0.09 3.00 3.48 30.60 0.11 3.10 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.56 -17.03 11.55 -148.98 -1.72 -18.75 16 15 C 0.09 2.18 5.07 86.38 0.44 2.62 16 16 N -0.59 -13.20 2.84 -850.52 -2.41 -15.61 16 17 C 0.08 1.18 8.87 127.77 1.13 2.31 16 18 C 0.56 15.47 6.43 86.70 0.56 16.03 16 19 O -0.57 -19.71 13.89 -3.99 -0.06 -19.76 16 20 C -0.18 -4.41 4.63 -20.02 -0.09 -4.51 16 21 C 0.14 3.14 9.21 84.96 0.78 3.92 16 22 N -0.50 -11.31 10.30 -193.92 -2.00 -13.31 16 23 C 0.19 3.92 11.25 84.99 0.96 4.87 16 24 C -0.03 -0.61 7.27 39.46 0.29 -0.32 16 25 N -0.50 -10.29 11.28 -191.90 -2.17 -12.45 16 26 C 0.28 3.92 12.51 179.98 2.25 6.17 16 27 N -0.48 -8.85 3.18 -542.65 -1.73 -10.58 16 28 C 0.05 0.72 10.83 127.77 1.38 2.10 16 29 C 0.09 2.22 6.83 39.50 0.27 2.49 16 30 H -0.01 -0.36 7.77 -2.38 -0.02 -0.38 16 31 H 0.01 0.78 6.98 -2.39 -0.02 0.77 16 32 H 0.04 1.56 6.81 -2.39 -0.02 1.54 16 33 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 35 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 36 H 0.38 8.04 8.81 -74.05 -0.65 7.38 16 37 H 0.08 2.06 7.49 -2.39 -0.02 2.04 16 38 H 0.12 1.81 7.86 -2.38 -0.02 1.79 16 39 H 0.07 1.09 7.47 -2.39 -0.02 1.07 16 40 H 0.07 1.03 6.51 -2.38 -0.02 1.01 16 41 H 0.10 1.02 7.84 -2.39 -0.02 1.00 16 42 H 0.17 3.67 7.08 -2.91 -0.02 3.65 16 43 H 0.19 2.80 8.06 -2.91 -0.02 2.77 16 44 H 0.27 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 1.98 4.42 -2.38 -0.01 1.97 16 Total: -1.00 -82.88 384.74 1.39 -81.49 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.36 Total: 11.62 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 10.90 Total: 37.46 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -10.12 Total: -141.16 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.78 Total: -38.51 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -82.88 1.39 -81.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755802100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.367 kcal (2) G-P(sol) polarization free energy of solvation -82.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds