Wall clock time and date at job start Wed Apr 1 2020 05:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99823 * 2 1 4 4 C 1.52995 * 109.47221 * 269.99661 * 3 2 1 5 5 O 1.42899 * 109.47073 * 65.00142 * 4 3 2 6 6 C 1.42904 * 114.00283 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47000 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47293 * 64.99926 * 7 6 5 9 9 C 1.36938 * 120.00118 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00315 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00118 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46979 * 59.99617 * 13 11 9 15 15 H 1.48498 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46977 * 299.99913 * 13 11 9 17 17 C 1.34779 * 120.00216 * 179.97438 * 2 1 3 18 18 O 1.21538 * 120.00362 * 181.99322 * 17 2 1 19 19 C 1.47975 * 119.99609 * 2.00103 * 17 2 1 20 20 C 1.39736 * 119.42742 * 172.74393 * 19 17 2 21 21 C 1.36980 * 119.59858 * 179.97438 * 20 19 17 22 22 C 1.39897 * 118.36248 * 359.97438 * 21 20 19 23 23 N 1.35439 * 133.81168 * 179.97438 * 22 21 20 24 24 C 1.30210 * 109.57367 * 180.02562 * 23 22 21 25 25 N 1.35994 * 110.18398 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.29456 * 179.97438 * 25 24 23 27 27 C 1.37942 * 107.41194 * 359.97438 * 25 24 23 28 28 N 1.31882 * 133.83029 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47032 * 263.74739 * 1 2 3 30 30 H 1.09001 * 109.46709 * 23.74959 * 1 2 3 31 31 H 1.08994 * 109.47081 * 143.74769 * 1 2 3 32 32 H 1.09002 * 109.47671 * 29.99882 * 3 2 1 33 33 H 1.09005 * 109.47158 * 149.99948 * 3 2 1 34 34 H 1.08999 * 109.47365 * 185.00404 * 4 3 2 35 35 H 1.09002 * 109.47433 * 305.00640 * 4 3 2 36 36 H 1.09006 * 109.46843 * 299.99954 * 6 5 4 37 37 H 1.08992 * 109.47124 * 59.99947 * 6 5 4 38 38 H 1.08997 * 109.46792 * 184.99920 * 7 6 5 39 39 H 1.08998 * 109.47100 * 304.99709 * 7 6 5 40 40 H 0.97003 * 120.00278 * 0.02562 * 8 7 6 41 41 H 0.96993 * 120.00212 * 180.02562 * 12 11 9 42 42 H 1.07997 * 120.19765 * 359.97438 * 20 19 17 43 43 H 1.08004 * 120.81998 * 180.02562 * 21 20 19 44 44 H 1.08003 * 124.90940 * 179.73712 * 24 23 22 45 45 H 1.08998 * 109.47359 * 90.02488 * 26 25 24 46 46 H 1.09001 * 109.46763 * 210.02705 * 26 25 24 47 47 H 1.08999 * 109.47208 * 330.02059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2061 1.9935 -2.0814 6 6 1.3324 2.4164 -3.4406 7 6 -0.0566 2.6907 -4.0205 8 7 -0.6646 3.8229 -3.3173 9 6 -1.9164 4.2539 -3.6670 10 1 -2.4554 3.7593 -4.4616 11 6 -2.4923 5.3270 -3.0010 12 7 -1.8353 5.9301 -2.0330 13 14 -4.2003 5.9144 -3.4776 14 1 -5.1745 4.8098 -3.2879 15 1 -4.5847 7.0654 -2.6216 16 1 -4.1997 6.3347 -4.9020 17 6 2.1389 -1.1672 0.0005 18 8 3.3538 -1.1675 0.0371 19 6 1.3997 -2.4483 -0.0437 20 6 2.1066 -3.6439 -0.1964 21 6 1.4259 -4.8319 -0.2372 22 6 0.0319 -4.8034 -0.1225 23 7 -0.9286 -5.7582 -0.1224 24 6 -2.0974 -5.2013 0.0164 25 7 -1.9651 -3.8514 0.1152 26 6 -3.0522 -2.8833 0.2803 27 6 -0.6192 -3.5613 0.0315 28 7 0.0778 -2.4422 0.0663 29 1 -0.3633 -0.1119 1.0215 30 1 -0.3633 0.9407 -0.4139 31 1 -0.3633 -0.8287 -0.6077 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1384 0.5139 34 1 3.0733 2.6064 -1.4438 35 1 2.9642 0.9131 -1.9815 36 1 1.9301 3.3270 -3.4837 37 1 1.8207 1.6335 -4.0207 38 1 0.0327 2.9270 -5.0808 39 1 -0.6829 1.8073 -3.8967 40 1 -0.1801 4.2679 -2.6043 41 1 -2.2379 6.6797 -1.5674 42 1 3.1831 -3.6314 -0.2818 43 1 1.9524 -5.7676 -0.3542 44 1 -3.0365 -5.7340 0.0447 45 1 -3.2402 -2.7256 1.3423 46 1 -2.7702 -1.9379 -0.1831 47 1 -3.9550 -3.2661 -0.1956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755876820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:38 Heat of formation + Delta-G solvation = 51.636553 kcal Electronic energy + Delta-G solvation = -30397.915310 eV Core-core repulsion = 26197.767315 eV Total energy + Delta-G solvation = -4200.147994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.72632 -40.28995 -38.30605 -37.57352 -35.68761 -34.88440 -34.33231 -32.29860 -31.53523 -30.69255 -29.45412 -27.62423 -27.50001 -26.48868 -24.98409 -23.67497 -23.48267 -22.52699 -21.23539 -21.11806 -19.98078 -18.20860 -17.90301 -17.14766 -17.12515 -16.58489 -16.44163 -16.16537 -15.66263 -15.29595 -15.10302 -14.91726 -14.46919 -14.14064 -13.94906 -13.81452 -13.69826 -13.28940 -13.05685 -13.02027 -12.90183 -12.84523 -12.65402 -12.42197 -12.16638 -11.75045 -11.64406 -11.38776 -11.19526 -11.01032 -10.88361 -10.78747 -10.49144 -10.31279 -10.03633 -9.69482 -9.27353 -9.16378 -9.07957 -8.87009 -8.85685 -8.55245 -6.87307 -5.72518 -3.00520 0.14572 0.90822 1.91928 2.17165 2.76661 2.91314 3.44280 3.48517 3.49854 3.58263 3.63347 3.85862 4.04928 4.18131 4.34521 4.59448 4.61665 4.66186 4.79858 4.85591 5.16470 5.18057 5.21433 5.23818 5.47673 5.50234 5.54794 5.58501 5.61122 5.69910 5.75665 5.76462 5.81397 5.84146 5.92688 5.99590 6.14136 6.36768 6.42126 6.45744 6.58345 6.62927 6.77094 7.25640 7.30352 7.39560 7.62567 7.71308 8.04904 8.46172 9.57478 10.16602 10.52898 11.50262 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.002770 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.347674 B =10105.534210 C =11985.527881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.580 5.580 3 C 0.116 3.884 4 C 0.045 3.955 5 O -0.370 6.370 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.726 5.726 9 C -0.238 4.238 10 H 0.068 0.932 11 C -0.014 4.014 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.287 1.287 17 C 0.569 3.431 18 O -0.540 6.540 19 C 0.120 3.880 20 C -0.125 4.125 21 C -0.028 4.028 22 C 0.022 3.978 23 N -0.493 5.493 24 C 0.282 3.718 25 N -0.481 5.481 26 C 0.077 3.923 27 C 0.227 3.773 28 N -0.435 5.435 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.024 0.976 40 H 0.387 0.613 41 H 0.255 0.745 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.224 0.776 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -22.356 6.703 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.310 5.310 3 C -0.006 4.006 4 C -0.033 4.033 5 O -0.289 6.289 6 C -0.018 4.018 7 C 0.028 3.972 8 N -0.371 5.371 9 C -0.370 4.370 10 H 0.086 0.914 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.355 3.645 18 O -0.417 6.417 19 C -0.028 4.028 20 C -0.149 4.149 21 C -0.055 4.055 22 C -0.100 4.100 23 N -0.212 5.212 24 C -0.004 4.004 25 N -0.173 5.173 26 C -0.065 4.065 27 C -0.009 4.009 28 N -0.152 5.152 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.240 0.760 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.450 -22.291 6.785 23.554 hybrid contribution -0.649 0.692 -0.197 0.969 sum 2.800 -21.598 6.589 22.754 Atomic orbital electron populations 1.22399 0.77334 1.04703 1.01860 1.47666 1.08540 1.04963 1.69841 1.21661 0.98397 0.84639 0.95902 1.22851 0.87610 0.99113 0.93727 1.88010 1.27772 1.87497 1.25605 1.22769 0.99204 0.97411 0.82426 1.20673 0.90277 0.91819 0.94459 1.42277 1.17730 1.34796 1.42322 1.19187 0.92729 1.10747 1.14292 0.91394 1.24722 0.98574 0.98935 0.98770 1.69660 1.37819 1.24915 1.25717 0.86283 0.84444 0.77995 0.77539 1.21369 1.21718 1.21349 1.17789 0.86432 0.82851 0.77423 1.90776 1.12609 1.86805 1.51525 1.20928 0.87619 0.94494 0.99780 1.21523 1.02318 0.90769 1.00245 1.20439 0.89942 0.99135 0.96023 1.19879 0.94889 0.90140 1.05100 1.70451 0.97641 1.31133 1.22022 1.25537 0.99238 0.79087 0.96581 1.45105 1.04631 1.08448 1.59125 1.22151 0.87807 0.92796 1.03735 1.19096 0.85695 0.91838 1.04269 1.67003 1.07193 1.26881 1.14098 0.93217 0.90076 0.88375 0.88884 0.88452 0.92435 0.93533 0.93386 0.94058 0.95156 0.95782 0.77912 0.93556 0.82601 0.83406 0.76019 0.90217 0.88623 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 9.05 59.85 0.54 1.62 16 2 N -0.58 -8.15 2.84 -182.65 -0.52 -8.67 16 3 C 0.12 1.55 5.80 -4.04 -0.02 1.53 16 4 C 0.05 0.65 6.28 37.15 0.23 0.88 16 5 O -0.37 -6.55 9.23 -35.23 -0.33 -6.88 16 6 C 0.06 1.02 6.07 37.16 0.23 1.25 16 7 C 0.16 3.25 6.65 -4.04 -0.03 3.22 16 8 N -0.73 -18.88 5.55 -59.91 -0.33 -19.21 16 9 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 13 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 C 0.57 8.21 7.65 -12.27 -0.09 8.12 16 18 O -0.54 -8.64 15.88 5.33 0.08 -8.55 16 19 C 0.12 1.56 6.62 -82.97 -0.55 1.01 16 20 C -0.13 -1.37 9.55 -39.48 -0.38 -1.75 16 21 C -0.03 -0.28 10.16 -39.42 -0.40 -0.69 16 22 C 0.02 0.25 7.25 -84.57 -0.61 -0.36 16 23 N -0.49 -5.27 11.27 -11.93 -0.13 -5.41 16 24 C 0.28 2.07 12.49 -89.74 -1.12 0.95 16 25 N -0.48 -4.13 3.20 -124.98 -0.40 -4.53 16 26 C 0.08 0.42 11.19 59.85 0.67 1.09 16 27 C 0.23 2.67 8.01 -155.74 -1.25 1.42 16 28 N -0.44 -5.52 6.03 -8.82 -0.05 -5.58 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.27 7.25 -51.93 -0.38 0.89 16 31 H 0.10 1.36 5.27 -52.15 -0.28 1.09 16 32 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.10 1.20 7.39 -51.93 -0.38 0.82 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.39 10.65 7.67 -40.82 -0.31 10.34 16 41 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.16 1.50 7.63 -52.49 -0.40 1.10 16 43 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.22 0.49 8.06 -52.48 -0.42 0.06 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -36.25 397.14 -9.81 -46.06 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.79 Total: 6.15 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -3.03 Total: 10.90 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.71 Total: -71.02 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.24 Total: -15.43 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.25 -9.81 -46.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.692 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds