Wall clock time and date at job start Wed Apr 1 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99823 * 2 1 4 4 C 1.52995 * 109.47221 * 269.99661 * 3 2 1 5 5 O 1.42899 * 109.47073 * 65.00142 * 4 3 2 6 6 C 1.42904 * 114.00283 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47000 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47293 * 64.99926 * 7 6 5 9 9 C 1.36938 * 120.00118 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99998 * 359.97438 * 9 8 7 11 11 C 1.38809 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00315 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00118 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46979 * 59.99617 * 13 11 9 15 15 H 1.48498 * 109.47285 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46977 * 299.99913 * 13 11 9 17 17 C 1.34779 * 120.00216 * 179.97438 * 2 1 3 18 18 O 1.21538 * 120.00362 * 181.99322 * 17 2 1 19 19 C 1.47975 * 119.99609 * 2.00103 * 17 2 1 20 20 C 1.39736 * 119.42742 * 172.74393 * 19 17 2 21 21 C 1.36980 * 119.59858 * 179.97438 * 20 19 17 22 22 C 1.39897 * 118.36248 * 359.97438 * 21 20 19 23 23 N 1.35439 * 133.81168 * 179.97438 * 22 21 20 24 24 C 1.30210 * 109.57367 * 180.02562 * 23 22 21 25 25 N 1.35994 * 110.18398 * 359.97438 * 24 23 22 26 26 C 1.46502 * 126.29456 * 179.97438 * 25 24 23 27 27 C 1.37942 * 107.41194 * 359.97438 * 25 24 23 28 28 N 1.31882 * 133.83029 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47032 * 263.74739 * 1 2 3 30 30 H 1.09001 * 109.46709 * 23.74959 * 1 2 3 31 31 H 1.08994 * 109.47081 * 143.74769 * 1 2 3 32 32 H 1.09002 * 109.47671 * 29.99882 * 3 2 1 33 33 H 1.09005 * 109.47158 * 149.99948 * 3 2 1 34 34 H 1.08999 * 109.47365 * 185.00404 * 4 3 2 35 35 H 1.09002 * 109.47433 * 305.00640 * 4 3 2 36 36 H 1.09006 * 109.46843 * 299.99954 * 6 5 4 37 37 H 1.08992 * 109.47124 * 59.99947 * 6 5 4 38 38 H 1.08997 * 109.46792 * 184.99920 * 7 6 5 39 39 H 1.08998 * 109.47100 * 304.99709 * 7 6 5 40 40 H 0.97003 * 120.00278 * 0.02562 * 8 7 6 41 41 H 0.96993 * 120.00212 * 180.02562 * 12 11 9 42 42 H 1.07997 * 120.19765 * 359.97438 * 20 19 17 43 43 H 1.08004 * 120.81998 * 180.02562 * 21 20 19 44 44 H 1.08003 * 124.90940 * 179.73712 * 24 23 22 45 45 H 1.08998 * 109.47359 * 90.02488 * 26 25 24 46 46 H 1.09001 * 109.46763 * 210.02705 * 26 25 24 47 47 H 1.08999 * 109.47208 * 330.02059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2061 1.9935 -2.0814 6 6 1.3324 2.4164 -3.4406 7 6 -0.0566 2.6907 -4.0205 8 7 -0.6646 3.8229 -3.3173 9 6 -1.9164 4.2539 -3.6670 10 1 -2.4554 3.7593 -4.4616 11 6 -2.4923 5.3270 -3.0010 12 7 -1.8353 5.9301 -2.0330 13 14 -4.2003 5.9144 -3.4776 14 1 -5.1745 4.8098 -3.2879 15 1 -4.5847 7.0654 -2.6216 16 1 -4.1997 6.3347 -4.9020 17 6 2.1389 -1.1672 0.0005 18 8 3.3538 -1.1675 0.0371 19 6 1.3997 -2.4483 -0.0437 20 6 2.1066 -3.6439 -0.1964 21 6 1.4259 -4.8319 -0.2372 22 6 0.0319 -4.8034 -0.1225 23 7 -0.9286 -5.7582 -0.1224 24 6 -2.0974 -5.2013 0.0164 25 7 -1.9651 -3.8514 0.1152 26 6 -3.0522 -2.8833 0.2803 27 6 -0.6192 -3.5613 0.0315 28 7 0.0778 -2.4422 0.0663 29 1 -0.3633 -0.1119 1.0215 30 1 -0.3633 0.9407 -0.4139 31 1 -0.3633 -0.8287 -0.6077 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1384 0.5139 34 1 3.0733 2.6064 -1.4438 35 1 2.9642 0.9131 -1.9815 36 1 1.9301 3.3270 -3.4837 37 1 1.8207 1.6335 -4.0207 38 1 0.0327 2.9270 -5.0808 39 1 -0.6829 1.8073 -3.8967 40 1 -0.1801 4.2679 -2.6043 41 1 -2.2379 6.6797 -1.5674 42 1 3.1831 -3.6314 -0.2818 43 1 1.9524 -5.7676 -0.3542 44 1 -3.0365 -5.7340 0.0447 45 1 -3.2402 -2.7256 1.3423 46 1 -2.7702 -1.9379 -0.1831 47 1 -3.9550 -3.2661 -0.1956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755876820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:37 Heat of formation + Delta-G solvation = 28.794910 kcal Electronic energy + Delta-G solvation = -30398.905798 eV Core-core repulsion = 26197.767315 eV Total energy + Delta-G solvation = -4201.138482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.45991 -41.31961 -39.32950 -38.78488 -36.92612 -36.19557 -35.54239 -33.47028 -33.02047 -31.80580 -30.57529 -29.25541 -28.11048 -27.57256 -25.92868 -25.48017 -24.52307 -23.51101 -22.79831 -21.93735 -20.98378 -19.23925 -18.99861 -18.81144 -17.99065 -17.63523 -17.46258 -17.26783 -16.89884 -16.59620 -16.25663 -15.91403 -15.66215 -15.58602 -15.11239 -14.80471 -14.71164 -14.57891 -14.40191 -14.21313 -13.94730 -13.80028 -13.50438 -13.45880 -13.27012 -13.18404 -12.98173 -12.74300 -12.69782 -12.55607 -12.19474 -11.97137 -11.90434 -11.81664 -11.69231 -11.36736 -10.94807 -10.53168 -10.11585 -9.91326 -9.70244 -9.58261 -8.97662 -7.91653 -5.20649 -0.68396 0.09142 1.27043 1.35319 1.48023 1.51438 1.57713 1.84772 1.91415 2.57907 2.70513 2.77651 2.81612 3.19360 3.41503 3.42683 3.61783 3.87568 3.95360 4.04701 4.08726 4.12371 4.18674 4.28752 4.41396 4.42601 4.44361 4.45856 4.48535 4.57371 4.64557 4.72024 4.75778 4.78226 4.84294 4.93641 4.99552 5.10405 5.12116 5.19298 5.37826 5.49410 5.52314 5.87104 6.19161 6.28737 6.35570 6.49041 6.60745 6.96063 7.36019 8.11453 8.36790 9.31672 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010440 B = 0.002770 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.347674 B =10105.534210 C =11985.527881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.584 5.584 3 C 0.116 3.884 4 C 0.047 3.953 5 O -0.392 6.392 6 C 0.066 3.934 7 C 0.153 3.847 8 N -0.739 5.739 9 C -0.248 4.248 10 H 0.074 0.926 11 C -0.075 4.075 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.277 1.277 15 H -0.295 1.295 16 H -0.278 1.278 17 C 0.568 3.432 18 O -0.561 6.561 19 C 0.093 3.907 20 C -0.123 4.123 21 C -0.029 4.029 22 C 0.011 3.989 23 N -0.526 5.526 24 C 0.304 3.696 25 N -0.482 5.482 26 C 0.073 3.927 27 C 0.203 3.797 28 N -0.445 5.445 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.019 0.981 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.165 0.835 43 H 0.173 0.827 44 H 0.275 0.725 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.213 -24.051 6.281 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.314 5.314 3 C -0.006 4.006 4 C -0.031 4.031 5 O -0.312 6.312 6 C -0.010 4.010 7 C 0.026 3.974 8 N -0.382 5.382 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.203 1.203 15 H -0.221 1.221 16 H -0.204 1.204 17 C 0.356 3.644 18 O -0.440 6.440 19 C -0.054 4.054 20 C -0.147 4.147 21 C -0.056 4.056 22 C -0.111 4.111 23 N -0.246 5.246 24 C 0.018 3.982 25 N -0.174 5.174 26 C -0.068 4.068 27 C -0.035 4.035 28 N -0.161 5.161 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.183 0.817 43 H 0.190 0.810 44 H 0.290 0.710 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.058 -24.003 6.335 24.910 hybrid contribution -0.284 1.087 -0.070 1.126 sum 1.774 -22.916 6.266 23.823 Atomic orbital electron populations 1.22225 0.77284 1.03180 1.02091 1.47748 1.08607 1.05241 1.69778 1.21704 0.98902 0.84483 0.95506 1.22956 0.86566 0.99728 0.93829 1.87983 1.29728 1.87646 1.25825 1.22643 0.97062 0.98506 0.82812 1.20827 0.91913 0.89850 0.94777 1.42461 1.17331 1.35994 1.42428 1.19607 0.93684 1.10598 1.14040 0.90759 1.25570 1.02578 0.99442 0.99093 1.69828 1.39527 1.25452 1.27066 0.85203 0.79858 0.77336 0.77293 1.20259 1.22136 1.20433 1.18018 0.86311 0.83345 0.76774 1.90745 1.13396 1.87212 1.52660 1.20813 0.88089 0.94356 1.02153 1.21611 1.02699 0.90430 0.99913 1.20711 0.89814 0.99749 0.95315 1.20243 0.95726 0.90500 1.04620 1.70481 0.98539 1.31419 1.24168 1.26625 1.00077 0.78573 0.92890 1.45428 1.03972 1.09423 1.58552 1.22371 0.87946 0.91738 1.04711 1.19420 0.87258 0.91686 1.05112 1.66838 1.07211 1.27740 1.14303 0.92428 0.92433 0.88503 0.88924 0.87340 0.91012 0.93492 0.93213 0.91230 0.94017 0.96258 0.79238 0.94044 0.81730 0.80981 0.70971 0.89151 0.90559 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.67 9.05 127.77 1.16 3.82 16 2 N -0.58 -16.74 2.84 -850.06 -2.41 -19.15 16 3 C 0.12 3.13 5.80 86.38 0.50 3.63 16 4 C 0.05 1.33 6.28 71.98 0.45 1.78 16 5 O -0.39 -13.90 9.23 -148.98 -1.38 -15.28 16 6 C 0.07 2.26 6.07 71.98 0.44 2.69 16 7 C 0.15 6.32 6.65 86.38 0.57 6.89 16 8 N -0.74 -38.67 5.55 -343.46 -1.91 -40.57 16 9 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 10 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 13 Si 0.97 45.97 29.55 68.60 2.03 47.99 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 C 0.57 16.71 7.65 86.82 0.66 17.37 16 18 O -0.56 -18.18 15.88 -3.83 -0.06 -18.24 16 19 C 0.09 2.47 6.62 41.97 0.28 2.74 16 20 C -0.12 -2.69 9.55 22.34 0.21 -2.48 16 21 C -0.03 -0.57 10.16 22.38 0.23 -0.34 16 22 C 0.01 0.25 7.25 39.69 0.29 0.54 16 23 N -0.53 -10.28 11.27 -191.65 -2.16 -12.44 16 24 C 0.30 3.59 12.49 180.04 2.25 5.83 16 25 N -0.48 -7.40 3.20 -549.31 -1.76 -9.16 16 26 C 0.07 0.66 11.19 127.77 1.43 2.09 16 27 C 0.20 4.65 8.01 134.06 1.07 5.73 16 28 N -0.44 -11.41 6.03 -181.83 -1.10 -12.51 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.88 7.25 -2.39 -0.02 1.87 16 31 H 0.10 2.78 5.27 -2.82 -0.01 2.77 16 32 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 33 H 0.11 2.68 7.39 -2.38 -0.02 2.66 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.38 21.07 7.67 -92.71 -0.71 20.36 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.17 3.18 7.63 -2.91 -0.02 3.15 16 43 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 44 H 0.27 -0.11 8.06 -2.91 -0.02 -0.14 16 45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -78.94 397.14 2.68 -76.26 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.28 Total: 29.18 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 10.85 Total: 33.29 kcal Atomic # 7 Polarization: -144.16 SS G_CDS: -9.05 Total: -153.21 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.44 Total: -33.51 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.94 2.68 -76.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.056 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds