Wall clock time and date at job start Wed Apr 1 2020 04:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48505 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46948 * 299.99922 * 3 2 1 6 6 H 1.48494 * 109.47470 * 60.00211 * 3 2 1 7 7 C 1.37871 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00087 * 186.11790 * 7 2 1 9 9 C 1.50702 * 120.00336 * 6.11962 * 7 2 1 10 10 H 1.08996 * 109.47441 * 25.84072 * 9 7 2 11 11 C 1.53001 * 109.47350 * 145.84579 * 9 7 2 12 12 C 1.50700 * 109.46584 * 294.99527 * 11 9 7 13 13 O 1.21276 * 120.00710 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99522 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99880 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47399 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.61512 * 300.22456 * 16 15 14 18 18 O 1.42906 * 109.47150 * 59.77505 * 17 16 15 19 19 C 1.53173 * 109.54243 * 60.44580 * 16 15 14 20 20 C 1.53102 * 109.16480 * 176.85182 * 19 16 15 21 21 O 1.42904 * 109.40874 * 302.38989 * 20 19 16 22 22 C 1.42904 * 114.09860 * 61.15968 * 21 20 19 23 23 C 1.53090 * 109.41568 * 298.83950 * 22 21 20 24 24 C 1.50707 * 109.46701 * 265.84153 * 9 7 2 25 25 C 1.38230 * 120.00265 * 303.47003 * 24 9 7 26 26 C 1.38237 * 120.00233 * 179.79023 * 25 24 9 27 27 C 1.38233 * 119.99540 * 0.43823 * 26 25 24 28 28 C 1.38237 * 120.00456 * 359.81398 * 27 26 25 29 29 C 1.38237 * 119.99708 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99796 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46747 * 175.00034 * 11 9 7 32 32 H 1.08994 * 109.47545 * 54.99522 * 11 9 7 33 33 H 0.96996 * 120.00127 * 0.02562 * 14 12 11 34 34 H 1.09006 * 109.46795 * 60.00271 * 15 14 12 35 35 H 1.09006 * 109.47324 * 300.00788 * 15 14 12 36 36 H 1.08998 * 109.47783 * 179.77588 * 17 16 15 37 37 H 1.09002 * 109.47331 * 299.77891 * 17 16 15 38 38 H 0.96706 * 113.99957 * 179.97438 * 18 17 16 39 39 H 1.09006 * 109.52337 * 296.75070 * 19 16 15 40 40 H 1.08994 * 109.52537 * 56.94602 * 19 16 15 41 41 H 1.08995 * 109.48267 * 182.40805 * 20 19 16 42 42 H 1.08996 * 109.48557 * 62.37447 * 20 19 16 43 43 H 1.08999 * 109.47867 * 178.85686 * 22 21 20 44 44 H 1.09004 * 109.48866 * 58.82874 * 22 21 20 45 45 H 1.09006 * 109.52007 * 297.70738 * 23 22 21 46 46 H 1.08997 * 109.52598 * 177.51784 * 23 22 21 47 47 H 1.07994 * 119.99839 * 359.97438 * 25 24 9 48 48 H 1.08000 * 120.00319 * 180.27219 * 26 25 24 49 49 H 1.08000 * 119.99971 * 179.83365 * 27 26 25 50 50 H 1.08001 * 120.00386 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00099 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1968 0.0991 9 6 1.2575 -2.4954 -0.1402 10 1 0.3200 -2.3213 -0.6684 11 6 2.1102 -3.4909 -0.9294 12 6 2.2982 -2.9861 -2.3368 13 8 1.7997 -1.9336 -2.6753 14 7 3.0212 -3.7038 -3.2192 15 6 3.2045 -3.2129 -4.5873 16 6 4.0571 -4.2083 -5.3765 17 6 5.4209 -4.3651 -4.7010 18 8 5.2394 -4.8426 -3.3664 19 6 3.3490 -5.5658 -5.4226 20 6 4.1706 -6.5324 -6.2796 21 8 4.3385 -5.9820 -7.5877 22 6 5.0365 -4.7352 -7.6109 23 6 4.2498 -3.6965 -6.8073 24 6 0.9666 -3.0569 1.2277 25 6 2.0021 -3.2923 2.1127 26 6 1.7349 -3.8033 3.3691 27 6 0.4331 -4.0874 3.7370 28 6 -0.6019 -3.8569 2.8501 29 6 -0.3351 -3.3418 1.5954 30 1 -0.4850 0.8401 0.0004 31 1 1.6092 -4.4585 -0.9543 32 1 3.0826 -3.5974 -0.4487 33 1 3.4203 -4.5454 -2.9484 34 1 3.7053 -2.2450 -4.5619 35 1 2.2321 -3.1063 -5.0684 36 1 6.0249 -5.0777 -5.2628 37 1 5.9270 -3.4001 -4.6759 38 1 6.0644 -4.9661 -2.8772 39 1 3.2572 -5.9633 -4.4117 40 1 2.3575 -5.4449 -5.8588 41 1 3.6499 -7.4873 -6.3512 42 1 5.1476 -6.6845 -5.8210 43 1 5.1396 -4.3956 -8.6415 44 1 6.0250 -4.8636 -7.1698 45 1 3.2764 -3.5378 -7.2715 46 1 4.8021 -2.7571 -6.7868 47 1 3.0195 -3.0741 1.8237 48 1 2.5434 -3.9830 4.0622 49 1 0.2245 -4.4891 4.7176 50 1 -1.6190 -4.0793 3.1375 51 1 -1.1437 -3.1614 0.9026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356487721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:55 Heat of formation + Delta-G solvation = -113.127130 kcal Electronic energy + Delta-G solvation = -31532.451159 eV Core-core repulsion = 27396.406067 eV Total energy + Delta-G solvation = -4136.045092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.55834 -38.79511 -38.07040 -37.06702 -35.03755 -33.87510 -32.77488 -31.39699 -31.32846 -29.95521 -28.96704 -27.52336 -26.26784 -25.14466 -23.91964 -23.07434 -22.25380 -21.54477 -19.99522 -19.31565 -18.86085 -17.62204 -16.73909 -16.38188 -16.29344 -16.01392 -15.58339 -15.48030 -15.30837 -14.92849 -14.55499 -14.28249 -14.15989 -14.00201 -13.80359 -13.50145 -13.01258 -12.79814 -12.62564 -12.55192 -12.42345 -12.33001 -12.06080 -11.84923 -11.59097 -11.55252 -11.49256 -11.02787 -10.91421 -10.82895 -10.60844 -10.48991 -10.42620 -10.21307 -10.19783 -9.99014 -9.61710 -9.36486 -8.96164 -8.70495 -8.29894 -8.21554 -7.99178 -7.54168 -5.86868 -3.85315 2.34210 2.40504 3.40666 3.47821 3.49859 3.58523 3.67540 3.77147 4.03571 4.40195 4.54494 4.57387 4.66799 4.74388 4.81538 4.90094 4.93171 4.94498 5.20383 5.27151 5.35327 5.42640 5.48997 5.56900 5.60597 5.70520 5.73056 5.78265 5.82382 5.88265 5.92751 5.95714 6.09948 6.18191 6.21535 6.33862 6.37518 6.46639 6.61363 6.89478 6.91536 6.98584 7.11652 7.22232 7.36077 7.41961 7.51887 7.60906 7.93222 8.01295 8.12873 8.44503 8.49237 9.14490 9.33432 9.75997 11.23639 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003011 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.926265 B = 9296.056464 C =10686.203205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.487 4.487 8 H 0.050 0.950 9 C 0.079 3.921 10 H 0.071 0.929 11 C -0.119 4.119 12 C 0.509 3.491 13 O -0.506 6.506 14 N -0.736 5.736 15 C 0.139 3.861 16 C -0.070 4.070 17 C 0.084 3.916 18 O -0.564 6.564 19 C -0.141 4.141 20 C 0.060 3.940 21 O -0.384 6.384 22 C 0.060 3.940 23 C -0.144 4.144 24 C -0.019 4.019 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.157 4.157 28 C -0.128 4.128 29 C -0.119 4.119 30 H 0.257 0.743 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.381 0.619 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.882 -13.855 -9.779 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.214 1.214 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.089 0.911 11 C -0.160 4.160 12 C 0.295 3.705 13 O -0.379 6.379 14 N -0.397 5.397 15 C 0.014 3.986 16 C -0.071 4.071 17 C 0.007 3.993 18 O -0.371 6.371 19 C -0.179 4.179 20 C -0.017 4.017 21 O -0.302 6.302 22 C -0.017 4.017 23 C -0.183 4.183 24 C -0.020 4.020 25 C -0.134 4.134 26 C -0.150 4.150 27 C -0.175 4.175 28 C -0.146 4.146 29 C -0.137 4.137 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.244 0.756 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.229 0.771 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.131 0.869 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.660 -13.010 -10.360 19.233 hybrid contribution 1.386 0.944 0.660 1.802 sum 11.047 -12.066 -9.700 19.018 Atomic orbital electron populations 1.69931 1.05904 1.26147 1.49962 1.24801 0.94636 0.98759 0.94305 0.86643 0.80137 0.84534 0.77192 1.20063 1.21105 1.21450 1.20704 0.92363 0.89633 1.49754 0.93226 1.17840 0.97598 0.91483 0.87033 0.91090 1.21737 1.02037 0.99639 0.92571 1.20865 0.77848 0.84437 0.87301 1.90737 1.46908 1.21671 1.78555 1.46372 1.55928 1.26805 1.10640 1.21047 0.98474 0.95661 0.83371 1.20899 0.94923 0.96517 0.94725 1.22296 0.96023 0.97876 0.83147 1.86208 1.35979 1.88869 1.26001 1.22181 0.99681 0.94486 1.01542 1.22640 0.99176 0.96606 0.83264 1.87939 1.77646 1.36513 1.28141 1.22605 0.94152 0.83969 1.00954 1.22175 1.02797 0.99329 0.93951 1.20762 0.91917 0.90204 0.99108 1.20942 0.99401 0.99586 0.93435 1.20965 0.96044 1.01332 0.96682 1.20781 0.93358 1.04385 0.98966 1.20979 0.97941 1.01016 0.94703 1.21095 0.97120 0.99361 0.96169 0.93295 0.92034 0.90749 0.75647 0.92318 0.92203 0.93568 0.93264 0.77079 0.89718 0.90724 0.88854 0.93116 0.88707 0.93200 0.89838 0.90240 0.86943 0.87729 0.87866 0.87689 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 12.87 55.43 0.71 -25.76 16 2 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 3 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.49 -13.39 6.37 -34.44 -0.22 -13.61 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.08 1.95 1.67 -92.92 -0.16 1.80 16 10 H 0.07 2.01 6.98 -51.93 -0.36 1.64 16 11 C -0.12 -2.41 4.95 -27.88 -0.14 -2.55 16 12 C 0.51 10.62 7.58 -10.98 -0.08 10.54 16 13 O -0.51 -13.13 14.98 5.56 0.08 -13.04 16 14 N -0.74 -11.65 4.65 -60.29 -0.28 -11.93 16 15 C 0.14 1.97 4.58 -4.04 -0.02 1.95 16 16 C -0.07 -0.70 0.51 -154.33 -0.08 -0.78 16 17 C 0.08 0.72 5.37 37.16 0.20 0.92 16 18 O -0.56 -4.98 9.67 -35.23 -0.34 -5.33 16 19 C -0.14 -1.37 4.61 -26.59 -0.12 -1.49 16 20 C 0.06 0.51 6.57 37.21 0.24 0.75 16 21 O -0.38 -3.79 10.77 -35.23 -0.38 -4.17 16 22 C 0.06 0.46 6.57 37.20 0.24 0.71 16 23 C -0.14 -1.23 4.92 -26.59 -0.13 -1.36 16 24 C -0.02 -0.44 4.77 -104.62 -0.50 -0.94 16 25 C -0.12 -2.39 8.86 -39.58 -0.35 -2.74 16 26 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 27 C -0.16 -2.79 10.05 -39.58 -0.40 -3.19 16 28 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 29 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 33 H 0.40 5.53 4.74 -40.82 -0.19 5.34 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.32 5.01 -51.93 -0.26 0.06 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.38 1.92 9.12 45.56 0.42 2.34 16 39 H 0.08 0.86 6.56 -51.93 -0.34 0.52 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.39 6.60 -51.93 -0.34 0.04 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.33 6.61 -51.93 -0.34 -0.01 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.11 2.24 7.76 -52.49 -0.41 1.83 16 48 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 49 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 50 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 51 H 0.11 2.48 7.95 -52.49 -0.42 2.07 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -34.60 399.05 -9.27 -43.87 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.27 Total: 9.10 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.78 Total: -16.45 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.43 Total: -37.69 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.64 Total: -22.54 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.60 -9.27 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356487721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.259 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds