Wall clock time and date at job start Wed Apr 1 2020 04:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48505 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46948 * 299.99922 * 3 2 1 6 6 H 1.48494 * 109.47470 * 60.00211 * 3 2 1 7 7 C 1.37871 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00087 * 186.11790 * 7 2 1 9 9 C 1.50702 * 120.00336 * 6.11962 * 7 2 1 10 10 H 1.08996 * 109.47441 * 25.84072 * 9 7 2 11 11 C 1.53001 * 109.47350 * 145.84579 * 9 7 2 12 12 C 1.50700 * 109.46584 * 294.99527 * 11 9 7 13 13 O 1.21276 * 120.00710 * 0.02562 * 12 11 9 14 14 N 1.34783 * 119.99522 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99880 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47399 * 180.02562 * 15 14 12 17 17 C 1.52997 * 109.61512 * 300.22456 * 16 15 14 18 18 O 1.42906 * 109.47150 * 59.77505 * 17 16 15 19 19 C 1.53173 * 109.54243 * 60.44580 * 16 15 14 20 20 C 1.53102 * 109.16480 * 176.85182 * 19 16 15 21 21 O 1.42904 * 109.40874 * 302.38989 * 20 19 16 22 22 C 1.42904 * 114.09860 * 61.15968 * 21 20 19 23 23 C 1.53090 * 109.41568 * 298.83950 * 22 21 20 24 24 C 1.50707 * 109.46701 * 265.84153 * 9 7 2 25 25 C 1.38230 * 120.00265 * 303.47003 * 24 9 7 26 26 C 1.38237 * 120.00233 * 179.79023 * 25 24 9 27 27 C 1.38233 * 119.99540 * 0.43823 * 26 25 24 28 28 C 1.38237 * 120.00456 * 359.81398 * 27 26 25 29 29 C 1.38237 * 119.99708 * 359.97438 * 28 27 26 30 30 H 0.97003 * 119.99796 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46747 * 175.00034 * 11 9 7 32 32 H 1.08994 * 109.47545 * 54.99522 * 11 9 7 33 33 H 0.96996 * 120.00127 * 0.02562 * 14 12 11 34 34 H 1.09006 * 109.46795 * 60.00271 * 15 14 12 35 35 H 1.09006 * 109.47324 * 300.00788 * 15 14 12 36 36 H 1.08998 * 109.47783 * 179.77588 * 17 16 15 37 37 H 1.09002 * 109.47331 * 299.77891 * 17 16 15 38 38 H 0.96706 * 113.99957 * 179.97438 * 18 17 16 39 39 H 1.09006 * 109.52337 * 296.75070 * 19 16 15 40 40 H 1.08994 * 109.52537 * 56.94602 * 19 16 15 41 41 H 1.08995 * 109.48267 * 182.40805 * 20 19 16 42 42 H 1.08996 * 109.48557 * 62.37447 * 20 19 16 43 43 H 1.08999 * 109.47867 * 178.85686 * 22 21 20 44 44 H 1.09004 * 109.48866 * 58.82874 * 22 21 20 45 45 H 1.09006 * 109.52007 * 297.70738 * 23 22 21 46 46 H 1.08997 * 109.52598 * 177.51784 * 23 22 21 47 47 H 1.07994 * 119.99839 * 359.97438 * 25 24 9 48 48 H 1.08000 * 120.00319 * 180.27219 * 26 25 24 49 49 H 1.08000 * 119.99971 * 179.83365 * 27 26 25 50 50 H 1.08001 * 120.00386 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.00099 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0799 -1.1968 0.0991 9 6 1.2575 -2.4954 -0.1402 10 1 0.3200 -2.3213 -0.6684 11 6 2.1102 -3.4909 -0.9294 12 6 2.2982 -2.9861 -2.3368 13 8 1.7997 -1.9336 -2.6753 14 7 3.0212 -3.7038 -3.2192 15 6 3.2045 -3.2129 -4.5873 16 6 4.0571 -4.2083 -5.3765 17 6 5.4209 -4.3651 -4.7010 18 8 5.2394 -4.8426 -3.3664 19 6 3.3490 -5.5658 -5.4226 20 6 4.1706 -6.5324 -6.2796 21 8 4.3385 -5.9820 -7.5877 22 6 5.0365 -4.7352 -7.6109 23 6 4.2498 -3.6965 -6.8073 24 6 0.9666 -3.0569 1.2277 25 6 2.0021 -3.2923 2.1127 26 6 1.7349 -3.8033 3.3691 27 6 0.4331 -4.0874 3.7370 28 6 -0.6019 -3.8569 2.8501 29 6 -0.3351 -3.3418 1.5954 30 1 -0.4850 0.8401 0.0004 31 1 1.6092 -4.4585 -0.9543 32 1 3.0826 -3.5974 -0.4487 33 1 3.4203 -4.5454 -2.9484 34 1 3.7053 -2.2450 -4.5619 35 1 2.2321 -3.1063 -5.0684 36 1 6.0249 -5.0777 -5.2628 37 1 5.9270 -3.4001 -4.6759 38 1 6.0644 -4.9661 -2.8772 39 1 3.2572 -5.9633 -4.4117 40 1 2.3575 -5.4449 -5.8588 41 1 3.6499 -7.4873 -6.3512 42 1 5.1476 -6.6845 -5.8210 43 1 5.1396 -4.3956 -8.6415 44 1 6.0250 -4.8636 -7.1698 45 1 3.2764 -3.5378 -7.2715 46 1 4.8021 -2.7571 -6.7868 47 1 3.0195 -3.0741 1.8237 48 1 2.5434 -3.9830 4.0622 49 1 0.2245 -4.4891 4.7176 50 1 -1.6190 -4.0793 3.1375 51 1 -1.1437 -3.1614 0.9026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356487721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:54 Heat of formation + Delta-G solvation = -137.155221 kcal Electronic energy + Delta-G solvation = -31533.493095 eV Core-core repulsion = 27396.406067 eV Total energy + Delta-G solvation = -4137.087028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43181 -40.34908 -39.58199 -37.89530 -36.08794 -35.61747 -34.08479 -33.34453 -32.06741 -31.49076 -30.48892 -28.65980 -27.46599 -26.66726 -24.69357 -24.48303 -23.44020 -23.08017 -21.57167 -20.85456 -19.75521 -18.60157 -18.37516 -17.76224 -17.38535 -17.01186 -16.77201 -16.70678 -16.46027 -16.27414 -15.83444 -15.69287 -15.50394 -15.33987 -15.24643 -14.52895 -14.36554 -14.21058 -13.96054 -13.84138 -13.58593 -13.47165 -13.32687 -13.23162 -13.13781 -13.02499 -12.85915 -12.50335 -12.41860 -12.27364 -11.85394 -11.81569 -11.71104 -11.62240 -11.29942 -11.16260 -10.93750 -10.87649 -10.61286 -10.37870 -10.23993 -9.74252 -9.53067 -9.17419 -8.03447 -6.05357 0.78995 0.85681 1.33486 1.37620 1.44991 2.07153 2.46192 2.48604 2.99061 3.19451 3.20469 3.37505 3.57107 3.73624 3.88442 4.04322 4.16195 4.25567 4.27092 4.28467 4.35437 4.41627 4.43402 4.54586 4.56200 4.57151 4.64501 4.68079 4.68961 4.76437 4.79534 4.83872 4.86260 4.93822 4.95289 5.01471 5.12614 5.20191 5.28156 5.29101 5.39371 5.54474 5.65591 5.78916 5.83300 5.84916 5.97301 6.19224 6.27890 6.43778 6.48058 6.85756 7.02334 7.10986 7.57101 7.75672 9.06822 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003011 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.926265 B = 9296.056464 C =10686.203205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.480 4.480 8 H 0.046 0.954 9 C 0.083 3.917 10 H 0.020 0.980 11 C -0.112 4.112 12 C 0.504 3.496 13 O -0.568 6.568 14 N -0.711 5.711 15 C 0.137 3.863 16 C -0.064 4.064 17 C 0.088 3.912 18 O -0.582 6.582 19 C -0.139 4.139 20 C 0.063 3.937 21 O -0.402 6.402 22 C 0.060 3.940 23 C -0.143 4.143 24 C -0.045 4.045 25 C -0.127 4.127 26 C -0.125 4.125 27 C -0.148 4.148 28 C -0.128 4.128 29 C -0.145 4.145 30 H 0.252 0.748 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.399 0.601 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.142 0.858 49 H 0.144 0.856 50 H 0.131 0.869 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.596 -16.103 -8.448 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.763 3.237 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.518 4.518 8 H 0.064 0.936 9 C 0.064 3.936 10 H 0.039 0.961 11 C -0.152 4.152 12 C 0.292 3.708 13 O -0.445 6.445 14 N -0.371 5.371 15 C 0.013 3.987 16 C -0.064 4.064 17 C 0.010 3.990 18 O -0.392 6.392 19 C -0.177 4.177 20 C -0.013 4.013 21 O -0.321 6.321 22 C -0.016 4.016 23 C -0.181 4.181 24 C -0.046 4.046 25 C -0.146 4.146 26 C -0.143 4.143 27 C -0.166 4.166 28 C -0.146 4.146 29 C -0.164 4.164 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.251 0.749 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.127 0.873 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.134 0.866 48 H 0.160 0.840 49 H 0.162 0.838 50 H 0.149 0.851 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.442 -15.319 -9.029 21.702 hybrid contribution 0.539 1.522 0.267 1.636 sum 12.981 -13.797 -8.761 20.871 Atomic orbital electron populations 1.70075 1.07168 1.26202 1.52454 1.25495 0.95327 1.01766 0.95083 0.85848 0.79581 0.81387 0.76856 1.18921 1.22034 1.20691 1.20984 0.92186 0.91007 1.47614 0.93564 1.17613 0.95578 0.91857 0.88569 0.96111 1.21614 1.02389 0.99382 0.91855 1.21065 0.77686 0.83922 0.88153 1.90716 1.49672 1.24466 1.79657 1.46170 1.53893 1.26409 1.10673 1.21157 0.98345 0.96568 0.82662 1.20864 0.95210 0.95292 0.95082 1.22268 0.94775 0.98681 0.83275 1.86100 1.37833 1.88864 1.26362 1.22143 0.99236 0.94733 1.01572 1.22679 0.99749 0.96289 0.82613 1.87925 1.78080 1.37310 1.28779 1.22740 0.94358 0.82743 1.01773 1.22179 1.02666 1.00328 0.92954 1.20569 0.93143 0.92448 0.98394 1.21035 0.98855 1.00315 0.94351 1.21375 0.97579 0.99399 0.95970 1.21264 0.92597 1.02561 1.00139 1.21282 0.99996 0.99848 0.93486 1.21102 0.96359 1.01297 0.97604 0.93870 0.89759 0.88797 0.73988 0.93858 0.94159 0.91026 0.93294 0.74887 0.90089 0.92403 0.88012 0.91467 0.87308 0.91339 0.91121 0.89255 0.86633 0.84010 0.83789 0.85065 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 12.87 21.45 0.28 -57.86 16 2 C 0.02 1.29 5.45 84.65 0.46 1.75 16 3 Si 0.94 47.92 29.54 68.60 2.03 49.94 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.28 -13.90 7.11 99.48 0.71 -13.20 16 7 C -0.48 -27.23 6.37 25.60 0.16 -27.06 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.08 4.26 1.67 -12.28 -0.02 4.23 16 10 H 0.02 1.26 6.98 -2.39 -0.02 1.24 16 11 C -0.11 -4.62 4.95 29.85 0.15 -4.47 16 12 C 0.50 21.83 7.58 87.66 0.66 22.49 16 13 O -0.57 -31.24 14.98 -3.02 -0.05 -31.29 16 14 N -0.71 -22.80 4.65 -463.05 -2.15 -24.95 16 15 C 0.14 4.02 4.58 86.38 0.40 4.41 16 16 C -0.06 -1.22 0.51 -52.07 -0.03 -1.25 16 17 C 0.09 1.28 5.37 71.98 0.39 1.67 16 18 O -0.58 -8.89 9.67 -148.98 -1.44 -10.33 16 19 C -0.14 -2.58 4.61 30.69 0.14 -2.44 16 20 C 0.06 0.94 6.57 72.02 0.47 1.41 16 21 O -0.40 -7.13 10.77 -148.98 -1.60 -8.73 16 22 C 0.06 0.79 6.57 72.01 0.47 1.26 16 23 C -0.14 -2.30 4.92 30.68 0.15 -2.15 16 24 C -0.04 -2.07 4.77 -19.86 -0.09 -2.17 16 25 C -0.13 -5.08 8.86 22.27 0.20 -4.89 16 26 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 27 C -0.15 -4.68 10.05 22.27 0.22 -4.45 16 28 C -0.13 -4.62 10.05 22.27 0.22 -4.39 16 29 C -0.15 -6.44 9.67 22.27 0.22 -6.23 16 30 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.09 3.47 7.78 -2.39 -0.02 3.45 16 33 H 0.42 11.08 4.74 -92.71 -0.44 10.64 16 34 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 0.72 5.01 -2.39 -0.01 0.71 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.40 2.86 9.12 -74.05 -0.68 2.19 16 39 H 0.08 1.55 6.56 -2.38 -0.02 1.53 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 0.79 6.60 -2.39 -0.02 0.78 16 43 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 0.66 6.61 -2.39 -0.02 0.64 16 45 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.12 4.43 7.76 -2.91 -0.02 4.41 16 48 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 49 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 50 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 51 H 0.09 4.33 7.95 -2.91 -0.02 4.30 16 Total: -1.00 -80.06 399.05 1.29 -78.77 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.17 Total: 30.64 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.40 Total: -26.19 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.88 Total: -82.81 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -3.09 Total: -50.35 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -80.06 1.29 -78.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356487721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.386 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds