Wall clock time and date at job start Wed Apr 1 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99627 * 2 1 4 4 O 1.20821 * 120.00665 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99323 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46939 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47371 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00381 * 269.99899 * 7 6 5 9 9 C 1.52992 * 109.47188 * 270.00069 * 8 7 6 10 10 C 1.52995 * 109.47364 * 65.00049 * 9 8 7 11 11 C 1.53009 * 109.47091 * 184.99749 * 9 8 7 12 12 C 1.34782 * 119.99890 * 89.99803 * 7 6 5 13 13 O 1.21282 * 119.99940 * 0.02562 * 12 7 6 14 14 C 1.50696 * 120.00157 * 179.97438 * 12 7 6 15 15 C 1.50696 * 109.47116 * 179.97438 * 14 12 7 16 16 C 1.37640 * 120.13080 * 265.00230 * 15 14 12 17 17 C 1.38613 * 120.24902 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.50186 * 0.02562 * 17 16 15 19 19 C 1.37598 * 120.24953 * 0.02769 * 18 17 16 20 20 C 1.40703 * 120.12602 * 84.73016 * 15 14 12 21 21 C 1.41399 * 120.24228 * 359.97438 * 20 15 14 22 22 H 1.07999 * 120.00139 * 329.69695 * 21 20 15 23 23 C 1.39949 * 119.99785 * 149.69527 * 21 20 15 24 24 N 1.30823 * 119.99667 * 162.01721 * 23 21 20 25 25 Si 1.86799 * 120.00057 * 342.02117 * 23 21 20 26 26 H 1.48502 * 109.47158 * 95.40081 * 25 23 21 27 27 H 1.48494 * 109.46787 * 215.39922 * 25 23 21 28 28 H 1.48500 * 109.47187 * 335.39960 * 25 23 21 29 29 H 1.09002 * 109.47145 * 300.00226 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99854 * 1 2 3 31 31 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46884 * 59.99763 * 5 3 2 33 33 H 1.09004 * 109.46847 * 299.99983 * 5 3 2 34 34 H 1.09003 * 109.47295 * 59.99795 * 6 5 3 35 35 H 1.09004 * 109.47096 * 300.00169 * 6 5 3 36 36 H 1.09002 * 109.46524 * 29.99988 * 8 7 6 37 37 H 1.08997 * 109.47221 * 149.99668 * 8 7 6 38 38 H 1.08997 * 109.47420 * 304.99298 * 9 8 7 39 39 H 1.08995 * 109.47730 * 59.99732 * 10 9 8 40 40 H 1.09007 * 109.47448 * 180.02562 * 10 9 8 41 41 H 1.09003 * 109.46816 * 299.99635 * 10 9 8 42 42 H 1.09003 * 109.46738 * 59.99954 * 11 9 8 43 43 H 1.08997 * 109.47020 * 180.02562 * 11 9 8 44 44 H 1.08997 * 109.46620 * 300.00039 * 11 9 8 45 45 H 1.09000 * 109.47252 * 300.00417 * 14 12 7 46 46 H 1.09004 * 109.46812 * 60.00676 * 14 12 7 47 47 H 1.07993 * 119.87403 * 0.02562 * 16 15 14 48 48 H 1.07999 * 119.74961 * 180.02562 * 17 16 15 49 49 H 1.08003 * 119.87668 * 180.02562 * 18 17 16 50 50 H 1.08001 * 120.12934 * 179.97438 * 19 18 17 51 51 H 0.96997 * 119.99798 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1947 2.8564 1.2689 9 6 6.3738 4.3100 1.7113 10 6 5.0053 4.9231 2.0149 11 6 7.2439 4.3568 2.9691 12 6 6.1361 2.8545 -1.1670 13 8 5.5305 2.8238 -2.2173 14 6 7.6409 2.9340 -1.1670 15 6 8.1426 2.9603 -2.5878 16 6 8.5327 1.7932 -3.2044 17 6 8.9940 1.8144 -4.5114 18 6 9.0685 3.0086 -5.2121 19 6 8.6849 4.1876 -4.6153 20 6 8.2085 4.1771 -3.2911 21 6 7.8044 5.3814 -2.6700 22 1 7.0317 5.3672 -1.9156 23 6 8.4059 6.5919 -3.0328 24 7 7.8214 7.7256 -2.7422 25 14 10.0431 6.5887 -3.9322 26 1 9.8047 6.6868 -5.3947 27 1 10.8561 7.7478 -3.4843 28 1 10.7700 5.3289 -3.6326 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9556 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2356 0.8906 35 1 3.6100 3.2367 -0.8893 36 1 5.6333 2.3120 2.0283 37 1 7.1726 2.3932 1.1383 38 1 6.8566 4.8755 0.9144 39 1 4.5225 4.3577 2.8118 40 1 5.1329 5.9589 2.3296 41 1 4.3855 4.8898 1.1188 42 1 8.2189 3.9200 2.7528 43 1 7.3711 5.3923 3.2845 44 1 6.7610 3.7913 3.7660 45 1 7.9569 3.8418 -0.6529 46 1 8.0507 2.0642 -0.6535 47 1 8.4785 0.8574 -2.6682 48 1 9.2977 0.8939 -4.9875 49 1 9.4291 3.0134 -6.2301 50 1 8.7441 5.1166 -5.1628 51 1 8.2384 8.5646 -2.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776837708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:10 Heat of formation + Delta-G solvation = -116.681616 kcal Electronic energy + Delta-G solvation = -31619.546207 eV Core-core repulsion = 27483.346981 eV Total energy + Delta-G solvation = -4136.199226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.64596 -39.71696 -37.80210 -36.71749 -36.48459 -34.09191 -33.54414 -32.17222 -31.14241 -30.27251 -28.21567 -27.21334 -26.86444 -26.10516 -24.94660 -23.71035 -21.38210 -20.97458 -20.51600 -19.85642 -18.47554 -17.76760 -17.30044 -16.89396 -16.80221 -16.37841 -16.01496 -15.39400 -15.12050 -14.55599 -14.32661 -14.23329 -14.16674 -13.71133 -13.59550 -13.28962 -13.17821 -12.92310 -12.77815 -12.59564 -12.47106 -12.21261 -12.10930 -12.08908 -11.86224 -11.70048 -11.41623 -11.34762 -11.13943 -11.03628 -10.97053 -10.76950 -10.71290 -10.63809 -10.61083 -10.51441 -10.20826 -9.66913 -9.51461 -9.17195 -9.08212 -8.41353 -7.55628 -7.45698 -6.89178 -4.42974 2.09003 2.46076 2.62589 2.76059 3.15432 3.21236 3.27284 3.35255 3.45199 4.02271 4.55024 4.63012 4.80889 4.87582 4.89477 4.91829 4.97357 5.04610 5.11049 5.24653 5.30642 5.38731 5.43273 5.54964 5.61087 5.70994 5.72727 5.77631 5.86942 5.91395 5.98075 6.01909 6.08031 6.13066 6.20581 6.22474 6.24320 6.29802 6.39448 6.43886 6.64526 6.76108 6.81904 6.99681 7.25049 7.46503 7.60693 7.69884 7.74961 7.81589 7.95855 8.19011 8.40847 8.72987 8.79866 8.87275 10.12866 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003425 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.551659 B = 8172.695010 C = 9369.090224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.622 5.622 8 C 0.116 3.884 9 C -0.122 4.122 10 C -0.148 4.148 11 C -0.143 4.143 12 C 0.519 3.481 13 O -0.515 6.515 14 C -0.072 4.072 15 C -0.167 4.167 16 C -0.069 4.069 17 C -0.243 4.243 18 C -0.080 4.080 19 C -0.234 4.234 20 C 0.110 3.890 21 C -0.443 4.443 22 H 0.089 0.911 23 C 0.085 3.915 24 N -0.809 5.809 25 Si 0.908 3.092 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.244 1.244 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.098 0.902 51 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -10.949 12.193 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.393 6.393 5 C -0.169 4.169 6 C 0.001 3.999 7 N -0.357 5.357 8 C -0.007 4.007 9 C -0.141 4.141 10 C -0.205 4.205 11 C -0.201 4.201 12 C 0.308 3.692 13 O -0.389 6.389 14 C -0.111 4.111 15 C -0.169 4.169 16 C -0.088 4.088 17 C -0.262 4.262 18 C -0.099 4.099 19 C -0.253 4.253 20 C 0.107 3.893 21 C -0.471 4.471 22 H 0.107 0.893 23 C -0.134 4.134 24 N -0.433 5.433 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.221 1.221 28 H -0.167 1.167 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.116 0.884 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.103 -10.373 11.635 16.740 hybrid contribution 0.321 0.270 -0.420 0.594 sum -5.782 -10.103 11.215 16.164 Atomic orbital electron populations 1.23253 0.76458 1.03557 1.02602 1.86517 1.23399 1.33715 1.84249 1.23740 0.92034 0.81257 0.72040 1.90686 1.67286 1.36231 1.45092 1.21853 0.87171 1.01711 1.06191 1.21211 0.80936 0.92817 1.04893 1.48047 1.05515 1.75593 1.06513 1.21663 0.97313 0.96526 0.85193 1.21630 0.96952 0.96745 0.98789 1.21908 0.96699 1.00527 1.01374 1.21762 0.99467 1.01986 0.96866 1.21187 0.90862 0.74648 0.82483 1.90697 1.70122 1.47191 1.30857 1.20346 0.90161 1.03095 0.97522 1.19090 1.09933 0.93933 0.93933 1.20416 0.98055 0.95654 0.94639 1.20318 1.13301 0.96427 0.96132 1.20592 0.98433 0.93275 0.97560 1.20998 1.11471 0.96647 0.96151 1.17481 0.88553 0.92697 0.90584 1.19404 1.18472 0.89126 1.20108 0.89305 1.26146 0.99183 0.94879 0.93145 1.69712 1.37052 0.99026 1.37493 0.86364 0.81937 0.78696 0.79480 1.19813 1.22052 1.16678 0.91946 0.91822 0.88204 0.87101 0.87747 0.89550 0.88951 0.90883 0.89940 0.89661 0.93223 0.92720 0.92031 0.92399 0.92455 0.92975 0.88123 0.90426 0.89175 0.89076 0.89079 0.88389 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.10 10.57 -39.26 -0.41 -4.51 16 3 C 0.47 5.97 7.96 36.01 0.29 6.26 16 4 O -0.51 -7.81 15.73 -18.75 -0.29 -8.10 16 5 C -0.13 -1.52 6.14 -27.88 -0.17 -1.69 16 6 C 0.12 1.74 3.77 -4.05 -0.02 1.72 16 7 N -0.62 -9.01 2.30 -173.70 -0.40 -9.41 16 8 C 0.12 1.28 4.70 -4.05 -0.02 1.26 16 9 C -0.12 -1.45 3.12 -90.62 -0.28 -1.73 16 10 C -0.15 -1.76 8.18 37.16 0.30 -1.45 16 11 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 12 C 0.52 9.85 7.27 -10.99 -0.08 9.77 16 13 O -0.52 -12.15 15.61 5.56 0.09 -12.07 16 14 C -0.07 -1.34 3.74 -29.04 -0.11 -1.44 16 15 C -0.17 -3.80 4.43 -103.91 -0.46 -4.26 16 16 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 17 C -0.24 -5.22 10.05 -39.29 -0.39 -5.61 16 18 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 19 C -0.23 -5.85 7.17 -38.87 -0.28 -6.13 16 20 C 0.11 2.81 5.10 -106.82 -0.54 2.26 16 21 C -0.44 -11.85 8.56 -37.74 -0.32 -12.18 16 22 H 0.09 2.51 6.99 -52.49 -0.37 2.14 16 23 C 0.09 2.23 5.41 -17.34 -0.09 2.14 16 24 N -0.81 -21.61 13.93 55.55 0.77 -20.83 16 25 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 26 H -0.27 -6.21 6.71 56.52 0.38 -5.83 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.24 -5.70 6.85 56.52 0.39 -5.31 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 35 H 0.09 1.60 7.38 -51.93 -0.38 1.22 16 36 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 38 H 0.09 1.29 7.30 -51.93 -0.38 0.91 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.84 5.89 -51.93 -0.31 0.54 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.10 1.89 6.27 -51.93 -0.33 1.57 16 46 H 0.08 1.17 7.31 -51.93 -0.38 0.79 16 47 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 50 H 0.10 2.46 4.74 -52.49 -0.25 2.21 16 51 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -32.44 408.55 -7.93 -40.37 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.12 Total: 6.45 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.55 Total: -14.84 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.37 Total: -30.24 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.62 Total: -24.68 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.44 -7.93 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776837708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.308 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds