Wall clock time and date at job start Wed Apr 1 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99627 * 2 1 4 4 O 1.20821 * 120.00665 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99323 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.46939 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47371 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00381 * 269.99899 * 7 6 5 9 9 C 1.52992 * 109.47188 * 270.00069 * 8 7 6 10 10 C 1.52995 * 109.47364 * 65.00049 * 9 8 7 11 11 C 1.53009 * 109.47091 * 184.99749 * 9 8 7 12 12 C 1.34782 * 119.99890 * 89.99803 * 7 6 5 13 13 O 1.21282 * 119.99940 * 0.02562 * 12 7 6 14 14 C 1.50696 * 120.00157 * 179.97438 * 12 7 6 15 15 C 1.50696 * 109.47116 * 179.97438 * 14 12 7 16 16 C 1.37640 * 120.13080 * 265.00230 * 15 14 12 17 17 C 1.38613 * 120.24902 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.50186 * 0.02562 * 17 16 15 19 19 C 1.37598 * 120.24953 * 0.02769 * 18 17 16 20 20 C 1.40703 * 120.12602 * 84.73016 * 15 14 12 21 21 C 1.41399 * 120.24228 * 359.97438 * 20 15 14 22 22 H 1.07999 * 120.00139 * 329.69695 * 21 20 15 23 23 C 1.39949 * 119.99785 * 149.69527 * 21 20 15 24 24 N 1.30823 * 119.99667 * 162.01721 * 23 21 20 25 25 Si 1.86799 * 120.00057 * 342.02117 * 23 21 20 26 26 H 1.48502 * 109.47158 * 95.40081 * 25 23 21 27 27 H 1.48494 * 109.46787 * 215.39922 * 25 23 21 28 28 H 1.48500 * 109.47187 * 335.39960 * 25 23 21 29 29 H 1.09002 * 109.47145 * 300.00226 * 1 2 3 30 30 H 1.09004 * 109.47215 * 59.99854 * 1 2 3 31 31 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46884 * 59.99763 * 5 3 2 33 33 H 1.09004 * 109.46847 * 299.99983 * 5 3 2 34 34 H 1.09003 * 109.47295 * 59.99795 * 6 5 3 35 35 H 1.09004 * 109.47096 * 300.00169 * 6 5 3 36 36 H 1.09002 * 109.46524 * 29.99988 * 8 7 6 37 37 H 1.08997 * 109.47221 * 149.99668 * 8 7 6 38 38 H 1.08997 * 109.47420 * 304.99298 * 9 8 7 39 39 H 1.08995 * 109.47730 * 59.99732 * 10 9 8 40 40 H 1.09007 * 109.47448 * 180.02562 * 10 9 8 41 41 H 1.09003 * 109.46816 * 299.99635 * 10 9 8 42 42 H 1.09003 * 109.46738 * 59.99954 * 11 9 8 43 43 H 1.08997 * 109.47020 * 180.02562 * 11 9 8 44 44 H 1.08997 * 109.46620 * 300.00039 * 11 9 8 45 45 H 1.09000 * 109.47252 * 300.00417 * 14 12 7 46 46 H 1.09004 * 109.46812 * 60.00676 * 14 12 7 47 47 H 1.07993 * 119.87403 * 0.02562 * 16 15 14 48 48 H 1.07999 * 119.74961 * 180.02562 * 17 16 15 49 49 H 1.08003 * 119.87668 * 180.02562 * 18 17 16 50 50 H 1.08001 * 120.12934 * 179.97438 * 19 18 17 51 51 H 0.96997 * 119.99798 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1947 2.8564 1.2689 9 6 6.3738 4.3100 1.7113 10 6 5.0053 4.9231 2.0149 11 6 7.2439 4.3568 2.9691 12 6 6.1361 2.8545 -1.1670 13 8 5.5305 2.8238 -2.2173 14 6 7.6409 2.9340 -1.1670 15 6 8.1426 2.9603 -2.5878 16 6 8.5327 1.7932 -3.2044 17 6 8.9940 1.8144 -4.5114 18 6 9.0685 3.0086 -5.2121 19 6 8.6849 4.1876 -4.6153 20 6 8.2085 4.1771 -3.2911 21 6 7.8044 5.3814 -2.6700 22 1 7.0317 5.3672 -1.9156 23 6 8.4059 6.5919 -3.0328 24 7 7.8214 7.7256 -2.7422 25 14 10.0431 6.5887 -3.9322 26 1 9.8047 6.6868 -5.3947 27 1 10.8561 7.7478 -3.4843 28 1 10.7700 5.3289 -3.6326 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9556 0.7808 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 3.6108 3.2356 0.8906 35 1 3.6100 3.2367 -0.8893 36 1 5.6333 2.3120 2.0283 37 1 7.1726 2.3932 1.1383 38 1 6.8566 4.8755 0.9144 39 1 4.5225 4.3577 2.8118 40 1 5.1329 5.9589 2.3296 41 1 4.3855 4.8898 1.1188 42 1 8.2189 3.9200 2.7528 43 1 7.3711 5.3923 3.2845 44 1 6.7610 3.7913 3.7660 45 1 7.9569 3.8418 -0.6529 46 1 8.0507 2.0642 -0.6535 47 1 8.4785 0.8574 -2.6682 48 1 9.2977 0.8939 -4.9875 49 1 9.4291 3.0134 -6.2301 50 1 8.7441 5.1166 -5.1628 51 1 8.2384 8.5646 -2.9934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776837708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:09 Heat of formation + Delta-G solvation = -134.983960 kcal Electronic energy + Delta-G solvation = -31620.339856 eV Core-core repulsion = 27483.346981 eV Total energy + Delta-G solvation = -4136.992875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.68863 -41.06024 -39.47165 -37.89183 -37.58676 -35.46837 -35.20004 -33.68881 -32.42718 -32.10342 -29.25322 -28.34748 -28.00552 -27.06764 -26.74010 -24.95730 -23.17719 -22.15197 -21.59120 -21.32582 -19.80076 -19.21586 -18.80793 -18.03152 -17.82862 -17.55686 -17.50385 -16.84117 -16.49970 -16.04806 -15.71904 -15.54434 -15.41716 -15.21643 -14.74342 -14.62127 -14.51259 -14.26927 -13.94927 -13.84461 -13.71388 -13.66726 -13.45008 -13.12982 -13.01596 -12.91945 -12.69542 -12.66266 -12.59096 -12.49539 -12.38581 -12.06009 -11.97781 -11.83892 -11.70220 -11.62724 -11.56597 -11.46578 -11.33155 -10.95569 -10.71702 -9.64638 -9.37594 -9.25911 -8.84846 -6.42643 0.81443 0.92718 1.09113 1.26802 1.39235 1.48962 1.56250 1.79670 2.14029 2.28002 2.66455 3.50654 3.64939 3.78894 3.92390 4.00683 4.06204 4.09006 4.20606 4.28513 4.29421 4.31840 4.33459 4.41413 4.46939 4.56905 4.59701 4.68035 4.71029 4.74883 4.75782 4.79299 4.87792 4.93994 4.96944 5.00219 5.05148 5.09719 5.18976 5.31155 5.34674 5.39521 5.42016 5.49190 5.69160 5.70392 5.89076 5.98382 6.08040 6.31940 6.44634 6.50234 6.64153 6.82880 6.93456 7.36628 8.23123 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010510 B = 0.003425 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.551659 B = 8172.695010 C = 9369.090224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.540 6.540 5 C -0.119 4.119 6 C 0.128 3.872 7 N -0.609 5.609 8 C 0.110 3.890 9 C -0.121 4.121 10 C -0.146 4.146 11 C -0.136 4.136 12 C 0.518 3.482 13 O -0.574 6.574 14 C -0.070 4.070 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.229 4.229 18 C -0.093 4.093 19 C -0.258 4.258 20 C 0.083 3.917 21 C -0.466 4.466 22 H 0.054 0.946 23 C 0.047 3.953 24 N -0.853 5.853 25 Si 0.963 3.037 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.248 1.248 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.119 0.881 50 H 0.088 0.912 51 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -14.846 13.887 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.430 6.430 5 C -0.158 4.158 6 C 0.004 3.996 7 N -0.341 5.341 8 C -0.011 4.011 9 C -0.141 4.141 10 C -0.204 4.204 11 C -0.194 4.194 12 C 0.308 3.692 13 O -0.452 6.452 14 C -0.109 4.109 15 C -0.172 4.172 16 C -0.095 4.095 17 C -0.248 4.248 18 C -0.111 4.111 19 C -0.278 4.278 20 C 0.080 3.920 21 C -0.496 4.496 22 H 0.072 0.928 23 C -0.166 4.166 24 N -0.480 5.480 25 Si 0.787 3.213 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.171 1.171 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.141 0.859 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.137 0.863 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.894 -14.291 13.382 20.181 hybrid contribution -0.150 1.269 -0.931 1.581 sum -5.044 -13.022 12.451 18.710 Atomic orbital electron populations 1.23559 0.74786 1.05777 1.02456 1.86503 1.25042 1.32596 1.83686 1.23905 0.92414 0.81218 0.71105 1.90681 1.68079 1.37417 1.46841 1.21736 0.86611 0.99726 1.07695 1.21148 0.80387 0.94607 1.03439 1.47983 1.05838 1.73649 1.06662 1.22029 0.98562 0.96337 0.84178 1.21581 0.96910 0.96852 0.98738 1.21901 0.96631 1.00805 1.01030 1.21711 0.99499 1.02129 0.96065 1.21223 0.91045 0.74070 0.82891 1.90669 1.71079 1.50332 1.33170 1.20375 0.90139 1.04652 0.95736 1.19586 1.08379 0.93507 0.95728 1.20903 0.96986 0.96601 0.95054 1.20876 1.10507 0.97314 0.96071 1.20967 0.98226 0.92852 0.99061 1.21135 1.12861 0.97535 0.96222 1.17734 0.89539 0.93423 0.91294 1.19292 1.19014 0.90631 1.20687 0.92778 1.26779 1.01644 0.94382 0.93826 1.69757 1.38655 0.99645 1.39982 0.85529 0.78643 0.78693 0.78428 1.19681 1.20550 1.17138 0.91501 0.92666 0.84809 0.87920 0.83627 0.87963 0.93563 0.86712 0.88155 0.94182 0.90234 0.93485 0.94715 0.91679 0.93276 0.90273 0.89041 0.85882 0.85234 0.85359 0.86274 0.89446 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.56 10.57 -51.42 -0.54 -8.10 16 3 C 0.47 11.62 7.96 71.24 0.57 12.18 16 4 O -0.54 -16.89 15.73 21.98 0.35 -16.54 16 5 C -0.12 -2.59 6.14 29.85 0.18 -2.40 16 6 C 0.13 3.58 3.77 86.38 0.33 3.90 16 7 N -0.61 -17.35 2.30 -821.84 -1.89 -19.24 16 8 C 0.11 2.15 4.70 86.38 0.41 2.56 16 9 C -0.12 -2.82 3.12 -10.79 -0.03 -2.85 16 10 C -0.15 -3.47 8.18 71.98 0.59 -2.88 16 11 C -0.14 -2.34 9.19 71.99 0.66 -1.67 16 12 C 0.52 19.98 7.27 87.65 0.64 20.61 16 13 O -0.57 -28.32 15.61 -3.04 -0.05 -28.37 16 14 C -0.07 -2.56 3.74 29.10 0.11 -2.45 16 15 C -0.17 -7.66 4.43 -19.40 -0.09 -7.75 16 16 C -0.08 -3.07 9.66 22.22 0.21 -2.86 16 17 C -0.23 -9.03 10.05 22.46 0.23 -8.81 16 18 C -0.09 -4.04 10.02 22.22 0.22 -3.82 16 19 C -0.26 -13.06 7.17 22.73 0.16 -12.90 16 20 C 0.08 4.34 5.10 -21.29 -0.11 4.23 16 21 C -0.47 -26.64 8.56 23.46 0.20 -26.44 16 22 H 0.05 3.35 6.99 -2.91 -0.02 3.33 16 23 C 0.05 2.62 5.41 85.26 0.46 3.08 16 24 N -0.85 -48.56 13.93 21.83 0.30 -48.26 16 25 Si 0.96 44.64 24.52 68.60 1.68 46.33 16 26 H -0.27 -12.32 6.71 99.48 0.67 -11.65 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.25 -11.50 6.85 99.48 0.68 -10.82 16 29 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.05 0.93 8.13 -2.38 -0.02 0.91 16 31 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.10 2.52 5.93 -2.39 -0.01 2.51 16 35 H 0.05 1.74 7.38 -2.39 -0.02 1.72 16 36 H 0.11 1.37 8.07 -2.39 -0.02 1.36 16 37 H 0.10 1.65 6.44 -2.39 -0.02 1.63 16 38 H 0.04 1.30 7.30 -2.39 -0.02 1.28 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.03 0.99 5.89 -2.39 -0.01 0.98 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 3.56 6.27 -2.39 -0.01 3.54 16 46 H 0.12 3.28 7.31 -2.39 -0.02 3.26 16 47 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 48 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 49 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 50 H 0.09 4.50 4.74 -2.91 -0.01 4.49 16 51 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 Total: -1.00 -77.82 408.55 6.65 -71.17 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.86 Total: 29.66 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 5.93 Total: -26.65 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.58 Total: -67.50 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.24 Total: -53.01 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.68 Total: 46.33 kcal Total: -77.82 6.65 -71.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776837708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.811 kcal (2) G-P(sol) polarization free energy of solvation -77.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds