Wall clock time and date at job start Wed Apr 1 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 C 1.52997 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47252 * 299.99840 * 4 3 2 6 6 O 1.42897 * 109.46803 * 300.00464 * 5 4 3 7 7 C 1.53002 * 109.47279 * 180.02562 * 5 4 3 8 8 N 1.46503 * 109.46556 * 185.00008 * 7 5 4 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06774 * 359.77134 * 14 13 12 16 16 C 1.38852 * 119.93464 * 0.50144 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.74702 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.53001 * 109.46942 * 59.99904 * 5 4 3 28 28 C 1.53000 * 109.47186 * 120.00266 * 2 1 3 29 29 H 1.08995 * 109.47648 * 59.99837 * 1 2 3 30 30 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46799 * 299.99330 * 1 2 3 32 32 H 1.08997 * 109.46841 * 240.00179 * 2 1 3 33 33 H 1.08997 * 109.47212 * 60.00407 * 3 2 1 34 34 H 1.09001 * 109.47188 * 299.99794 * 3 2 1 35 35 H 1.09004 * 109.47388 * 180.02562 * 4 3 2 36 36 H 1.09003 * 109.47662 * 59.99768 * 4 3 2 37 37 H 0.96702 * 113.99927 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.46933 * 64.99936 * 7 5 4 39 39 H 1.08997 * 109.46850 * 304.99758 * 7 5 4 40 40 H 0.97001 * 120.00603 * 0.02562 * 8 7 5 41 41 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 42 42 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 43 43 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 45 45 H 1.08001 * 120.03298 * 180.27571 * 15 14 13 46 46 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 47 47 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 48 48 H 1.09003 * 109.46922 * 60.00715 * 27 5 4 49 49 H 1.09004 * 109.47098 * 180.02562 * 27 5 4 50 50 H 1.08997 * 109.47160 * 299.99718 * 28 2 1 51 51 H 1.08998 * 109.47274 * 60.00235 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0805 0.7211 1.2483 6 8 3.6046 1.3946 2.4153 7 6 5.6105 0.7216 1.2480 8 7 6.0992 -0.0708 2.3792 9 6 7.4245 -0.2121 2.5803 10 8 8.2123 0.3171 1.8252 11 6 7.9273 -1.0267 3.7442 12 6 9.4343 -1.0263 3.7439 13 6 10.1252 -2.0076 3.0561 14 6 11.5080 -2.0103 3.0529 15 6 12.2035 -1.0298 3.7331 16 6 11.5129 -0.0467 4.4291 17 8 12.1937 0.9153 5.1028 18 6 13.5352 0.7915 5.1574 19 1 14.0272 0.0009 4.6104 20 6 14.2830 1.6792 5.9159 21 7 13.6836 2.6419 6.5826 22 14 16.1415 1.5072 5.9922 23 1 16.7072 1.6382 4.6254 24 1 16.7017 2.5707 6.8642 25 1 16.4930 0.1758 6.5479 26 6 10.1238 -0.0461 4.4296 27 6 3.5705 -0.7214 1.2483 28 6 2.0400 -0.7213 1.2492 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9333 2.4702 -0.0002 36 1 3.9330 0.9288 -0.8908 37 1 3.8899 0.9907 3.2464 38 1 5.9735 1.7455 1.3378 39 1 5.9738 0.2877 0.3165 40 1 5.4692 -0.4944 2.9829 41 1 7.5638 -2.0505 3.6551 42 1 7.5643 -0.5921 4.6756 43 1 9.5836 -2.7732 2.5204 44 1 12.0447 -2.7775 2.5147 45 1 13.2835 -1.0299 3.7265 46 1 14.2067 3.2627 7.1135 47 1 9.5838 0.7195 4.9667 48 1 3.9335 -1.2351 0.3582 49 1 3.9338 -1.2352 2.1384 50 1 1.6768 -0.2075 2.1392 51 1 1.6768 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856474281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:20 Heat of formation + Delta-G solvation = -114.686801 kcal Electronic energy + Delta-G solvation = -29963.382680 eV Core-core repulsion = 25827.269956 eV Total energy + Delta-G solvation = -4136.112724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.56462 -39.47530 -38.65173 -36.56040 -36.22234 -34.34715 -32.43970 -32.16631 -31.77174 -31.20800 -29.23231 -28.40698 -26.76185 -25.22042 -24.31716 -23.32256 -21.66699 -21.31279 -20.93795 -20.22931 -20.15055 -17.79485 -17.39261 -16.88887 -16.75608 -16.08080 -15.69164 -15.44453 -14.97542 -14.73387 -14.63130 -14.49661 -14.36313 -14.09489 -13.87250 -13.64324 -13.50291 -13.37179 -13.28980 -12.75160 -12.66219 -12.50534 -12.37436 -12.31959 -11.91685 -11.81375 -11.70210 -11.49512 -11.41867 -11.22401 -11.13658 -10.80011 -10.75190 -10.74309 -10.58337 -10.47142 -10.42057 -10.09122 -9.74877 -9.29303 -9.19379 -8.78470 -8.01945 -7.16771 -6.39094 -3.98168 2.13172 2.44126 2.76098 3.10973 3.16733 3.19032 3.20417 3.77648 4.01240 4.17700 4.22009 4.29660 4.54442 4.57325 4.70630 4.77161 4.90582 4.97844 5.05568 5.10338 5.13643 5.15330 5.22432 5.26223 5.34167 5.40470 5.43211 5.46444 5.52578 5.55081 5.65027 5.67499 5.70013 5.77633 5.79327 5.84055 5.87506 5.92633 5.97599 6.13639 6.22363 6.27953 6.38624 6.70501 6.96658 7.12011 7.25018 7.31058 7.36637 7.41912 7.49229 7.87882 8.05845 8.29086 9.06496 9.77627 10.79111 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.001751 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.519676 B =15988.649213 C =16548.628686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.104 4.104 5 C 0.127 3.873 6 O -0.549 6.549 7 C 0.093 3.907 8 N -0.741 5.741 9 C 0.514 3.486 10 O -0.515 6.515 11 C -0.093 4.093 12 C -0.034 4.034 13 C -0.197 4.197 14 C -0.075 4.075 15 C -0.230 4.230 16 C 0.154 3.846 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.110 4.110 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.373 0.627 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.394 0.606 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.270 0.730 47 H 0.113 0.887 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.178 -8.253 -10.461 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.147 4.147 4 C -0.142 4.142 5 C 0.086 3.914 6 O -0.355 6.355 7 C -0.031 4.031 8 N -0.396 5.396 9 C 0.300 3.700 10 O -0.388 6.388 11 C -0.133 4.133 12 C -0.035 4.035 13 C -0.216 4.216 14 C -0.093 4.093 15 C -0.250 4.250 16 C 0.101 3.899 17 O -0.083 6.083 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.193 4.193 27 C -0.183 4.183 28 C -0.147 4.147 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.220 0.780 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.229 0.771 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.132 0.868 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.851 -7.053 -11.197 28.155 hybrid contribution 1.011 -0.727 0.651 1.405 sum -23.840 -7.780 -10.546 27.204 Atomic orbital electron populations 1.21818 0.95260 1.01546 1.01808 1.21155 0.95492 0.96293 0.98243 1.21504 0.94473 0.96290 1.02404 1.21473 0.96617 1.01201 0.94906 1.21432 0.90622 0.91884 0.87449 1.86587 1.76643 1.56866 1.15374 1.22044 0.93604 0.97091 0.90348 1.46050 1.07416 1.54980 1.31184 1.20786 0.81489 0.81075 0.86622 1.90772 1.54948 1.46590 1.46518 1.20589 0.94729 1.00724 0.97277 1.18647 0.91874 0.95385 0.97548 1.20339 0.94083 1.01350 1.05807 1.20676 0.93839 0.97255 0.97564 1.21171 1.00557 0.98512 1.04740 1.19280 0.91489 0.88165 0.90974 1.83976 1.20841 1.40205 1.63297 1.21268 0.78649 1.16179 1.30666 0.89190 1.25269 1.00409 0.95306 0.95536 1.70029 1.36319 1.15314 1.28294 0.85791 0.80707 0.78319 0.78653 1.19544 1.20321 1.19548 1.19943 0.91580 1.01234 1.06577 1.22233 0.96900 0.96298 1.02911 1.21520 0.94403 1.00179 0.98600 0.92773 0.92845 0.92629 0.91457 0.90898 0.92017 0.90777 0.90452 0.77975 0.90545 0.90790 0.77113 0.88439 0.88233 0.87992 0.87492 0.85627 0.92060 0.86844 0.90702 0.91623 0.91193 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.09 -0.55 2.72 -90.62 -0.25 -0.79 16 3 C -0.11 -0.72 5.06 -26.73 -0.14 -0.85 16 4 C -0.10 -0.74 4.94 -26.73 -0.13 -0.87 16 5 C 0.13 0.91 0.71 -90.62 -0.06 0.85 16 6 O -0.55 -4.29 11.63 -35.23 -0.41 -4.70 16 7 C 0.09 0.89 4.84 -4.04 -0.02 0.87 16 8 N -0.74 -6.99 5.03 -60.29 -0.30 -7.29 16 9 C 0.51 7.23 7.82 -10.98 -0.09 7.14 16 10 O -0.51 -10.04 16.03 5.55 0.09 -9.95 16 11 C -0.09 -1.21 5.83 -29.04 -0.17 -1.38 16 12 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 13 C -0.20 -3.59 9.70 -39.53 -0.38 -3.97 16 14 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 15 C -0.23 -5.27 9.17 -39.40 -0.36 -5.64 16 16 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.18 -5.31 9.76 0.05 0.00 -5.31 16 18 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 19 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 22 Si 0.94 20.99 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 26 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 27 C -0.15 -0.85 4.69 -26.71 -0.13 -0.97 16 28 C -0.11 -0.62 5.06 -26.71 -0.14 -0.76 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.57 7.68 -51.93 -0.40 0.17 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.37 1.96 8.19 45.56 0.37 2.34 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 2.35 6.36 -40.82 -0.26 2.09 16 41 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 43 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.32 6.58 -51.93 -0.34 -0.02 16 50 H 0.07 0.44 7.68 -51.93 -0.40 0.04 16 51 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -35.55 407.98 -9.04 -44.59 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.49 Total: 5.97 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.81 Total: -20.31 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.46 Total: -32.41 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.32 Total: -19.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.55 -9.04 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856474281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.093 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds