Wall clock time and date at job start Wed Apr 1 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46931 * 2 1 4 4 C 1.52997 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47252 * 299.99840 * 4 3 2 6 6 O 1.42897 * 109.46803 * 300.00464 * 5 4 3 7 7 C 1.53002 * 109.47279 * 180.02562 * 5 4 3 8 8 N 1.46503 * 109.46556 * 185.00008 * 7 5 4 9 9 C 1.34783 * 119.99585 * 179.97438 * 8 7 5 10 10 O 1.21284 * 119.99976 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00059 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06774 * 359.77134 * 14 13 12 16 16 C 1.38852 * 119.93464 * 0.50144 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.74702 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47063 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47319 * 300.00306 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 C 1.53001 * 109.46942 * 59.99904 * 5 4 3 28 28 C 1.53000 * 109.47186 * 120.00266 * 2 1 3 29 29 H 1.08995 * 109.47648 * 59.99837 * 1 2 3 30 30 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46799 * 299.99330 * 1 2 3 32 32 H 1.08997 * 109.46841 * 240.00179 * 2 1 3 33 33 H 1.08997 * 109.47212 * 60.00407 * 3 2 1 34 34 H 1.09001 * 109.47188 * 299.99794 * 3 2 1 35 35 H 1.09004 * 109.47388 * 180.02562 * 4 3 2 36 36 H 1.09003 * 109.47662 * 59.99768 * 4 3 2 37 37 H 0.96702 * 113.99927 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.46933 * 64.99936 * 7 5 4 39 39 H 1.08997 * 109.46850 * 304.99758 * 7 5 4 40 40 H 0.97001 * 120.00603 * 0.02562 * 8 7 5 41 41 H 1.09004 * 109.46756 * 60.00007 * 11 9 8 42 42 H 1.08998 * 109.46908 * 300.00650 * 11 9 8 43 43 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 45 45 H 1.08001 * 120.03298 * 180.27571 * 15 14 13 46 46 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 47 47 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 48 48 H 1.09003 * 109.46922 * 60.00715 * 27 5 4 49 49 H 1.09004 * 109.47098 * 180.02562 * 27 5 4 50 50 H 1.08997 * 109.47160 * 299.99718 * 28 2 1 51 51 H 1.08998 * 109.47274 * 60.00235 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0805 0.7211 1.2483 6 8 3.6046 1.3946 2.4153 7 6 5.6105 0.7216 1.2480 8 7 6.0992 -0.0708 2.3792 9 6 7.4245 -0.2121 2.5803 10 8 8.2123 0.3171 1.8252 11 6 7.9273 -1.0267 3.7442 12 6 9.4343 -1.0263 3.7439 13 6 10.1252 -2.0076 3.0561 14 6 11.5080 -2.0103 3.0529 15 6 12.2035 -1.0298 3.7331 16 6 11.5129 -0.0467 4.4291 17 8 12.1937 0.9153 5.1028 18 6 13.5352 0.7915 5.1574 19 1 14.0272 0.0009 4.6104 20 6 14.2830 1.6792 5.9159 21 7 13.6836 2.6419 6.5826 22 14 16.1415 1.5072 5.9922 23 1 16.7072 1.6382 4.6254 24 1 16.7017 2.5707 6.8642 25 1 16.4930 0.1758 6.5479 26 6 10.1238 -0.0461 4.4296 27 6 3.5705 -0.7214 1.2483 28 6 2.0400 -0.7213 1.2492 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9333 2.4702 -0.0002 36 1 3.9330 0.9288 -0.8908 37 1 3.8899 0.9907 3.2464 38 1 5.9735 1.7455 1.3378 39 1 5.9738 0.2877 0.3165 40 1 5.4692 -0.4944 2.9829 41 1 7.5638 -2.0505 3.6551 42 1 7.5643 -0.5921 4.6756 43 1 9.5836 -2.7732 2.5204 44 1 12.0447 -2.7775 2.5147 45 1 13.2835 -1.0299 3.7265 46 1 14.2067 3.2627 7.1135 47 1 9.5838 0.7195 4.9667 48 1 3.9335 -1.2351 0.3582 49 1 3.9338 -1.2352 2.1384 50 1 1.6768 -0.2075 2.1392 51 1 1.6768 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856474281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:19 Heat of formation + Delta-G solvation = -139.614164 kcal Electronic energy + Delta-G solvation = -29964.463612 eV Core-core repulsion = 25827.269956 eV Total energy + Delta-G solvation = -4137.193656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.40413 -40.78399 -40.03792 -38.19538 -36.93784 -35.26847 -34.34395 -33.52908 -32.59089 -31.71464 -30.90262 -29.41741 -27.90968 -27.18568 -25.02487 -23.90193 -23.26802 -22.71441 -21.65192 -21.43296 -20.67466 -19.53717 -18.86277 -18.30421 -17.40842 -17.06691 -16.83446 -16.64471 -16.28353 -16.10223 -15.96343 -15.54461 -15.32537 -15.10522 -15.05761 -14.79882 -14.57799 -14.35649 -14.28400 -14.02948 -13.91763 -13.60626 -13.34341 -13.22184 -12.95656 -12.84101 -12.75527 -12.46647 -12.40491 -12.37091 -12.25333 -12.21703 -12.12752 -11.96632 -11.62887 -11.24520 -11.20974 -11.09176 -10.88626 -10.78349 -10.64857 -10.15461 -9.63393 -8.97565 -8.46801 -6.15580 0.52182 0.76229 1.33685 1.45097 1.50488 1.66673 2.15592 2.18414 2.85199 3.18073 3.23305 3.44665 3.55361 3.70307 3.77997 3.80246 4.03752 4.09413 4.12043 4.20186 4.26993 4.32391 4.43575 4.48489 4.51529 4.58280 4.59227 4.65391 4.67585 4.74296 4.76366 4.84357 4.91469 4.98355 5.04878 5.07450 5.12099 5.12895 5.13891 5.29540 5.31234 5.34896 5.38466 5.42880 5.45275 5.65414 5.65660 5.73160 5.75602 6.02751 6.23977 6.51625 6.78226 6.97470 7.28440 7.79163 8.76490 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.025344 B = 0.001751 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.519676 B =15988.649213 C =16548.628686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.109 4.109 5 C 0.137 3.863 6 O -0.562 6.562 7 C 0.096 3.904 8 N -0.715 5.715 9 C 0.514 3.486 10 O -0.579 6.579 11 C -0.091 4.091 12 C -0.027 4.027 13 C -0.180 4.180 14 C -0.075 4.075 15 C -0.247 4.247 16 C 0.110 3.890 17 O -0.235 6.235 18 C -0.416 4.416 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.193 4.193 27 C -0.142 4.142 28 C -0.107 4.107 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.384 0.616 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.415 0.585 41 H 0.147 0.853 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.959 -11.670 -11.563 31.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.143 4.143 4 C -0.147 4.147 5 C 0.096 3.904 6 O -0.369 6.369 7 C -0.029 4.029 8 N -0.370 5.370 9 C 0.302 3.698 10 O -0.458 6.458 11 C -0.130 4.130 12 C -0.027 4.027 13 C -0.198 4.198 14 C -0.093 4.093 15 C -0.267 4.267 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.492 4.492 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.212 4.212 27 C -0.179 4.179 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.165 0.835 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.726 -10.531 -12.297 31.248 hybrid contribution 1.256 0.184 0.838 1.521 sum -25.470 -10.347 -11.460 29.784 Atomic orbital electron populations 1.21804 0.94880 1.01933 1.01693 1.21166 0.95828 0.95567 0.98625 1.21456 0.93890 0.97002 1.01910 1.21532 0.97136 1.00624 0.95437 1.21338 0.88619 0.93070 0.87339 1.86587 1.76659 1.57553 1.16104 1.22036 0.95313 0.95475 0.90059 1.45778 1.06402 1.53740 1.31071 1.20966 0.82298 0.80417 0.86113 1.90768 1.56763 1.49369 1.48850 1.20714 0.90691 1.03701 0.97862 1.19217 0.95123 0.93390 0.95018 1.20989 0.93840 1.01318 1.03692 1.21142 0.94889 0.96745 0.96485 1.21296 1.00467 0.99300 1.05601 1.19905 0.92910 0.89005 0.92190 1.83934 1.21356 1.42900 1.66016 1.21787 0.79125 1.16920 1.31338 0.88273 1.26618 1.06215 0.94567 0.94729 1.70183 1.38660 1.16946 1.30213 0.84635 0.73246 0.79008 0.79209 1.18379 1.19469 1.17948 1.20234 0.90691 1.02552 1.07772 1.22216 0.97022 0.94873 1.03824 1.21497 0.94161 1.00616 0.98129 0.92638 0.92184 0.93056 0.91078 0.92284 0.91647 0.92152 0.89558 0.76694 0.93273 0.91219 0.74585 0.83529 0.85880 0.83355 0.83702 0.86510 0.91860 0.87622 0.90444 0.90003 0.91751 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 71.98 0.66 -0.62 16 2 C -0.09 -0.90 2.72 -10.79 -0.03 -0.93 16 3 C -0.11 -1.27 5.06 30.59 0.15 -1.11 16 4 C -0.11 -1.46 4.94 30.59 0.15 -1.31 16 5 C 0.14 1.74 0.71 -10.79 -0.01 1.73 16 6 O -0.56 -7.89 11.63 -148.98 -1.73 -9.62 16 7 C 0.10 1.72 4.84 86.38 0.42 2.13 16 8 N -0.71 -11.48 5.03 -463.05 -2.33 -13.81 16 9 C 0.51 13.21 7.82 87.66 0.69 13.89 16 10 O -0.58 -22.23 16.03 -3.04 -0.05 -22.27 16 11 C -0.09 -1.97 5.83 29.10 0.17 -1.80 16 12 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 13 C -0.18 -5.86 9.70 22.30 0.22 -5.65 16 14 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 15 C -0.25 -11.53 9.17 22.39 0.21 -11.33 16 16 C 0.11 5.85 6.65 22.58 0.15 6.00 16 17 O -0.24 -14.94 9.76 -22.74 -0.22 -15.16 16 18 C -0.42 -25.32 9.49 67.92 0.64 -24.68 16 19 H 0.10 5.56 5.21 -2.91 -0.02 5.54 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 21 N -0.92 -58.35 13.67 21.61 0.30 -58.06 16 22 Si 1.02 44.29 29.55 68.60 2.03 46.32 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 26 C -0.19 -8.77 9.65 22.39 0.22 -8.56 16 27 C -0.14 -1.20 4.69 30.61 0.14 -1.06 16 28 C -0.11 -0.92 5.06 30.61 0.15 -0.76 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.88 7.68 -2.39 -0.02 0.86 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.38 3.13 8.19 -74.06 -0.61 2.52 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 3.21 6.36 -92.71 -0.59 2.62 16 41 H 0.15 1.84 8.09 -2.38 -0.02 1.82 16 42 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 43 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 46 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.43 6.58 -2.38 -0.02 0.41 16 50 H 0.06 0.65 7.68 -2.39 -0.02 0.63 16 51 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -85.72 407.98 2.27 -83.44 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.25 Total: 27.69 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 4.54 Total: -38.54 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.03 Total: -71.86 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -2.00 Total: -47.05 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -85.72 2.27 -83.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856474281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.169 kcal (2) G-P(sol) polarization free energy of solvation -85.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds