Wall clock time and date at job start Wed Apr 1 2020 04:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47437 * 2 1 4 4 C 1.52994 * 109.47260 * 299.99843 * 3 2 1 5 5 C 1.53007 * 109.47184 * 300.00083 * 4 3 2 6 6 O 1.42900 * 109.46531 * 299.99947 * 5 4 3 7 7 C 1.52994 * 109.47184 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47036 * 184.99923 * 7 5 4 9 9 C 1.34783 * 119.99952 * 180.02562 * 8 7 5 10 10 O 1.21273 * 119.99925 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99807 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.46825 * 179.97438 * 11 9 8 13 13 C 1.38305 * 119.92975 * 269.72310 * 12 11 9 14 14 C 1.38101 * 120.06640 * 179.72832 * 13 12 11 15 15 C 1.38882 * 119.92897 * 0.56922 * 14 13 12 16 16 O 1.35750 * 120.06702 * 179.68077 * 15 14 13 17 17 C 1.34836 * 116.99960 * 174.48794 * 16 15 14 18 18 H 1.07992 * 119.99697 * 5.06215 * 17 16 15 19 19 C 1.38656 * 119.99961 * 185.06006 * 17 16 15 20 20 N 1.31557 * 120.00167 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99687 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47152 * 60.00060 * 21 19 17 23 23 H 1.48505 * 109.46888 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47401 * 299.99748 * 21 19 17 25 25 C 1.38877 * 119.86246 * 359.71064 * 15 14 13 26 26 C 1.38091 * 119.93052 * 359.97438 * 25 15 14 27 27 C 1.52991 * 109.47090 * 59.99813 * 5 4 3 28 28 C 1.52999 * 109.47102 * 239.99722 * 2 1 3 29 29 H 1.08998 * 109.47646 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47195 * 300.00617 * 1 2 3 31 31 H 1.09009 * 109.46895 * 59.99931 * 1 2 3 32 32 H 1.09004 * 109.46458 * 119.99903 * 2 1 3 33 33 H 1.09008 * 109.47341 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47517 * 60.00008 * 3 2 1 35 35 H 1.09008 * 109.47412 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47538 * 59.99788 * 4 3 2 37 37 H 0.96711 * 113.99437 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47302 * 305.00106 * 7 5 4 39 39 H 1.09004 * 109.47552 * 64.99881 * 7 5 4 40 40 H 0.96999 * 120.00248 * 359.97438 * 8 7 5 41 41 H 1.08996 * 109.47319 * 300.00098 * 11 9 8 42 42 H 1.09004 * 109.47243 * 60.00324 * 11 9 8 43 43 H 1.07993 * 119.96961 * 359.97438 * 13 12 11 44 44 H 1.08004 * 120.03845 * 180.27942 * 14 13 12 45 45 H 0.97000 * 119.99662 * 180.02562 * 20 19 17 46 46 H 1.08008 * 120.03340 * 179.97438 * 25 15 14 47 47 H 1.08001 * 119.96826 * 180.02562 * 26 25 15 48 48 H 1.09008 * 109.47341 * 60.00115 * 27 5 4 49 49 H 1.08994 * 109.47673 * 180.02562 * 27 5 4 50 50 H 1.09008 * 109.46841 * 300.00457 * 28 2 1 51 51 H 1.08996 * 109.47202 * 180.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5302 2.1636 -1.2492 5 6 2.0401 1.4423 -2.4985 6 8 3.4691 1.4423 -2.4983 7 6 1.5297 2.1632 -3.7477 8 7 1.9173 1.4066 -4.9408 9 6 1.5738 1.8553 -6.1644 10 8 0.9435 2.8851 -6.2777 11 6 1.9730 1.0772 -7.3917 12 6 1.4702 1.7872 -8.6221 13 6 0.2185 1.4878 -9.1285 14 6 -0.2474 2.1408 -10.2527 15 6 0.5471 3.0905 -10.8816 16 8 0.0945 3.7293 -11.9906 17 6 0.8657 4.7190 -12.4845 18 1 1.8342 4.9169 -12.0496 19 6 0.4153 5.4823 -13.5508 20 7 -0.7647 5.2414 -14.0802 21 14 1.4841 6.8528 -14.2355 22 1 2.7685 6.2848 -14.7181 23 1 0.7799 7.5126 -15.3643 24 1 1.7537 7.8502 -13.1688 25 6 1.8059 3.3847 -10.3740 26 6 2.2634 2.7330 -9.2458 27 6 1.5301 0.0000 -2.4985 28 6 2.0400 -0.7213 -1.2492 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 1.8932 -0.5139 0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 0.8900 35 1 1.8939 3.1912 -1.2495 36 1 0.4402 2.1637 -1.2493 37 1 3.8625 1.0002 -3.2633 38 1 0.4434 2.2412 -3.7039 39 1 1.9640 3.1620 -3.7939 40 1 2.4218 0.5831 -4.8502 41 1 3.0594 0.9993 -7.4351 42 1 1.5387 0.0785 -7.3460 43 1 -0.3968 0.7454 -8.6421 44 1 -1.2268 1.9098 -10.6451 45 1 -1.0795 5.7752 -14.8264 46 1 2.4263 4.1225 -10.8611 47 1 3.2421 2.9616 -8.8503 48 1 0.4400 0.0000 -2.4985 49 1 1.8937 -0.5141 -3.3882 50 1 1.6765 -1.7490 -1.2491 51 1 3.1299 -0.7217 -1.2490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856475276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:25 Heat of formation + Delta-G solvation = -110.789133 kcal Electronic energy + Delta-G solvation = -30027.844376 eV Core-core repulsion = 25891.900668 eV Total energy + Delta-G solvation = -4135.943708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.71464 -39.52333 -38.68941 -36.63623 -36.28142 -34.36439 -32.46378 -31.81336 -31.34249 -30.94898 -30.11271 -28.16745 -26.68738 -25.41860 -24.73369 -23.28770 -21.93620 -21.54263 -20.95731 -20.10226 -19.27167 -17.94155 -17.51459 -16.90821 -16.55962 -16.26796 -15.90333 -15.60196 -14.99245 -14.84015 -14.59129 -14.50939 -14.34135 -14.02401 -13.86809 -13.60069 -13.45660 -13.32014 -13.30009 -12.79171 -12.66610 -12.60561 -12.39673 -12.29919 -12.02242 -11.97881 -11.78191 -11.47619 -11.35492 -11.22558 -10.93832 -10.82563 -10.77546 -10.72630 -10.60834 -10.45479 -10.40661 -10.11249 -9.72303 -9.29147 -9.20933 -8.77978 -8.11194 -7.12533 -6.40807 -3.99417 2.28267 2.29699 2.76157 3.09998 3.15896 3.19022 3.20219 3.73956 4.00513 4.14226 4.20127 4.28870 4.56109 4.60900 4.67336 4.73809 4.89536 4.97249 5.05174 5.10647 5.12131 5.16506 5.26338 5.28214 5.33235 5.35812 5.37227 5.43970 5.44699 5.57051 5.60423 5.63333 5.67434 5.76202 5.77291 5.85004 5.88229 5.88984 5.93193 6.09306 6.25463 6.26659 6.45631 6.74082 6.95304 7.09081 7.20568 7.27289 7.37689 7.40801 7.49088 7.87963 8.04399 8.29843 9.04793 9.75404 10.77248 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.001712 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.981169 B =16355.516407 C =16634.318722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.105 4.105 5 C 0.128 3.872 6 O -0.550 6.550 7 C 0.093 3.907 8 N -0.742 5.742 9 C 0.509 3.491 10 O -0.516 6.516 11 C -0.079 4.079 12 C -0.171 4.171 13 C -0.060 4.060 14 C -0.192 4.192 15 C 0.157 3.843 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.232 4.232 26 C -0.056 4.056 27 C -0.147 4.147 28 C -0.109 4.109 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.372 0.628 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.393 0.607 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.270 0.730 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -13.216 27.129 31.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.147 4.147 4 C -0.143 4.143 5 C 0.087 3.913 6 O -0.355 6.355 7 C -0.031 4.031 8 N -0.398 5.398 9 C 0.295 3.705 10 O -0.390 6.390 11 C -0.119 4.119 12 C -0.172 4.172 13 C -0.078 4.078 14 C -0.211 4.211 15 C 0.103 3.897 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.252 4.252 26 C -0.075 4.075 27 C -0.185 4.185 28 C -0.147 4.147 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.219 0.781 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.144 0.856 47 H 0.122 0.878 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.281 -12.035 27.250 30.444 hybrid contribution 0.835 0.041 -0.807 1.162 sum 7.116 -11.995 26.443 29.895 Atomic orbital electron populations 1.21970 0.95424 1.01674 1.01996 1.21105 0.95748 0.96220 0.98053 1.21465 1.01514 0.94787 0.96888 1.21510 1.00742 0.99464 0.92602 1.21423 0.81218 0.94365 0.94306 1.86587 1.18615 1.81244 1.49081 1.22028 1.00951 0.96207 0.83918 1.46108 1.59731 1.27971 1.05969 1.21085 0.79159 0.86062 0.84151 1.90757 1.38052 1.23870 1.86287 1.20406 1.02101 0.98780 0.90626 1.18618 0.96859 1.03549 0.98186 1.20392 0.94343 0.98162 0.94918 1.20155 1.00559 1.01472 0.98901 1.19381 0.91841 0.91668 0.86826 1.83977 1.46013 1.43787 1.34377 1.21280 1.00309 1.09763 1.15392 0.89142 1.25284 0.96704 0.98327 0.96226 1.70033 1.17585 1.39054 1.23180 0.85786 0.79088 0.79927 0.78651 1.19534 1.20295 1.19505 1.21104 0.97796 1.05879 1.00392 1.20504 0.97989 0.94470 0.94514 1.22259 1.02239 0.95436 0.98555 1.21476 1.01159 0.98358 0.93702 0.92847 0.92775 0.92096 0.91323 0.91004 0.92008 0.90944 0.90157 0.78064 0.90839 0.90712 0.77192 0.89019 0.89029 0.87432 0.86553 0.92020 0.85591 0.87843 0.90358 0.91729 0.92064 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.50 37.16 0.32 -0.50 16 2 C -0.09 -0.52 3.19 -90.62 -0.29 -0.81 16 3 C -0.11 -0.68 5.30 -26.74 -0.14 -0.82 16 4 C -0.11 -0.71 4.67 -26.73 -0.12 -0.84 16 5 C 0.13 0.86 0.71 -90.62 -0.06 0.79 16 6 O -0.55 -3.94 11.63 -35.23 -0.41 -4.35 16 7 C 0.09 0.85 4.84 -4.05 -0.02 0.83 16 8 N -0.74 -6.56 5.03 -60.30 -0.30 -6.87 16 9 C 0.51 6.79 7.82 -10.98 -0.09 6.71 16 10 O -0.52 -9.73 16.03 5.56 0.09 -9.64 16 11 C -0.08 -0.96 5.83 -29.04 -0.17 -1.13 16 12 C -0.17 -2.98 4.38 -104.58 -0.46 -3.44 16 13 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 14 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.24 9.76 0.03 0.00 -5.24 16 17 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 18 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.80 13.67 55.48 0.76 -25.05 16 21 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.23 -5.28 9.17 -39.40 -0.36 -5.64 16 26 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 27 C -0.15 -0.82 4.41 -26.73 -0.12 -0.93 16 28 C -0.11 -0.59 5.30 -26.73 -0.14 -0.73 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.06 0.34 4.81 -51.92 -0.25 0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.52 7.68 -51.92 -0.40 0.13 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.08 0.50 6.43 -51.93 -0.33 0.16 16 37 H 0.37 1.69 8.19 45.56 0.37 2.06 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.39 2.15 6.36 -40.82 -0.26 1.89 16 41 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 47 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 48 H 0.08 0.47 6.43 -51.92 -0.33 0.14 16 49 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 50 H 0.06 0.31 8.14 -51.92 -0.42 -0.12 16 51 H 0.07 0.40 7.68 -51.93 -0.40 0.00 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -35.19 400.93 -8.87 -44.06 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.14 Total: 5.45 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.88 Total: -20.37 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.46 Total: -31.91 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.32 Total: -19.23 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.19 -8.87 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856475276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds