Wall clock time and date at job start Wed Apr 1 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00024 * 2 1 4 4 O 1.20822 * 119.99971 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99778 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.46957 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46954 * 180.02562 * 6 5 3 8 8 C 1.37090 * 119.99724 * 265.55823 * 7 6 5 9 9 H 1.08004 * 119.99766 * 145.67634 * 8 7 6 10 10 C 1.38954 * 120.00346 * 325.66655 * 8 7 6 11 11 N 1.31408 * 120.00218 * 338.41936 * 10 8 7 12 12 Si 1.86797 * 119.99964 * 158.40813 * 10 8 7 13 13 H 1.48509 * 109.46847 * 90.00682 * 12 10 8 14 14 H 1.48496 * 109.47252 * 210.00562 * 12 10 8 15 15 H 1.48500 * 109.47529 * 330.00829 * 12 10 8 16 16 C 1.34780 * 120.00124 * 85.56218 * 7 6 5 17 17 O 1.21293 * 119.99776 * 359.97438 * 16 7 6 18 18 C 1.50693 * 120.00104 * 180.02562 * 16 7 6 19 19 C 1.50700 * 109.47361 * 179.97438 * 18 16 7 20 20 C 1.38236 * 119.99542 * 270.27391 * 19 18 16 21 21 C 1.38247 * 119.99526 * 180.27640 * 20 19 18 22 22 C 1.38229 * 120.00063 * 359.46581 * 21 20 19 23 23 C 1.50698 * 120.00156 * 180.27226 * 22 21 20 24 24 C 1.53004 * 109.46792 * 60.00345 * 23 22 21 25 25 C 1.52998 * 109.47200 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47448 * 300.00609 * 23 22 21 27 27 C 1.38235 * 119.99982 * 0.26030 * 22 21 20 28 28 C 1.38233 * 120.00012 * 89.99604 * 19 18 16 29 29 H 1.09002 * 109.47415 * 300.00036 * 1 2 3 30 30 H 1.09010 * 109.47037 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47060 * 59.99902 * 5 3 2 33 33 H 1.09000 * 109.47143 * 300.00382 * 5 3 2 34 34 H 1.08995 * 109.47368 * 60.00040 * 6 5 3 35 35 H 1.09000 * 109.46955 * 299.99598 * 6 5 3 36 36 H 0.96996 * 120.00711 * 179.97438 * 11 10 8 37 37 H 1.08999 * 109.47359 * 59.99326 * 18 16 7 38 38 H 1.09007 * 109.47128 * 299.99312 * 18 16 7 39 39 H 1.07994 * 120.00281 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.99651 * 179.74060 * 21 20 19 41 41 H 1.09003 * 109.47094 * 59.99675 * 24 23 22 42 42 H 1.09000 * 109.47165 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46900 * 300.00163 * 24 23 22 44 44 H 1.08999 * 109.46918 * 60.00335 * 25 23 22 45 45 H 1.09000 * 109.47294 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47517 * 300.00417 * 25 23 22 47 47 H 1.09002 * 109.47154 * 59.99280 * 26 23 22 48 48 H 1.08997 * 109.47451 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.46944 * 299.99833 * 26 23 22 50 50 H 1.08004 * 120.00422 * 180.02562 * 27 22 21 51 51 H 1.07994 * 120.00456 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 7 5.4632 2.8185 -0.0010 8 6 6.1439 2.9453 1.1822 9 1 7.1088 2.4755 1.3031 10 6 5.5925 3.6783 2.2260 11 7 4.6690 4.5802 1.9795 12 14 6.1636 3.3816 3.9795 13 1 7.3085 4.2767 4.2854 14 1 5.0486 3.6658 4.9182 15 1 6.5881 1.9664 4.1292 16 6 6.1400 2.7645 -1.1653 17 8 5.5377 2.6520 -2.2121 18 6 7.6449 2.8427 -1.1665 19 6 8.1511 2.7598 -2.5835 20 6 8.4400 1.5293 -3.1433 21 6 8.9098 1.4536 -4.4412 22 6 9.0803 2.6075 -5.1829 23 6 9.5867 2.5246 -6.5999 24 6 8.6203 1.6856 -7.4385 25 6 9.6843 3.9329 -7.1899 26 6 10.9700 1.8710 -6.6098 27 6 8.7861 3.8376 -4.6250 28 6 8.3212 3.9137 -3.3253 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9558 0.7808 -0.8909 33 1 3.9565 0.7804 0.8891 34 1 3.6109 3.2355 0.8906 35 1 3.6101 3.2366 -0.8894 36 1 4.2838 5.0916 2.7081 37 1 8.0522 2.0147 -0.5864 38 1 7.9600 3.7871 -0.7225 39 1 8.3024 0.6274 -2.5653 40 1 9.1395 0.4926 -4.8772 41 1 7.6347 2.1512 -7.4314 42 1 8.9863 1.6260 -8.4635 43 1 8.5512 0.6824 -7.0179 44 1 10.3729 4.5302 -6.5923 45 1 10.0501 3.8729 -8.2149 46 1 8.6989 4.3989 -7.1828 47 1 10.9009 0.8678 -6.1892 48 1 11.3364 1.8115 -7.6346 49 1 11.6584 2.4687 -6.0123 50 1 8.9189 4.7392 -5.2046 51 1 8.0909 4.8747 -2.8897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:10 Heat of formation + Delta-G solvation = -111.334915 kcal Electronic energy + Delta-G solvation = -30626.305035 eV Core-core repulsion = 26490.337660 eV Total energy + Delta-G solvation = -4135.967375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.05390 -39.73336 -38.52815 -36.43690 -36.08212 -34.86495 -32.06393 -31.60552 -30.75183 -30.49905 -27.66663 -27.36946 -27.28318 -26.61905 -25.06279 -23.39680 -21.98743 -21.64122 -20.22591 -19.16888 -18.95373 -17.45294 -16.74308 -16.30358 -16.15747 -16.09405 -15.76354 -15.18717 -14.71617 -14.52893 -14.28392 -14.20999 -13.86348 -13.63580 -13.52916 -13.48058 -13.11737 -12.97599 -12.72534 -12.49717 -12.24132 -12.15019 -11.98811 -11.81532 -11.73151 -11.64566 -11.35914 -11.34209 -11.27273 -11.11337 -10.93736 -10.80522 -10.71606 -10.53727 -10.45870 -10.37457 -10.27351 -10.06865 -9.98839 -9.19211 -8.58169 -8.48091 -8.01934 -7.63180 -6.43362 -4.13242 1.76440 1.84061 2.67735 3.04923 3.08297 3.18644 3.21055 3.85156 4.05146 4.13861 4.65064 4.77139 4.79815 4.94229 4.99639 5.24292 5.30590 5.31009 5.31113 5.32818 5.36830 5.43595 5.50935 5.55818 5.64206 5.70843 5.79011 5.81255 5.81496 5.83070 5.88960 5.94254 6.00651 6.05186 6.12305 6.25513 6.26422 6.28060 6.30405 6.33676 6.50315 6.56092 6.73928 6.84214 6.90916 6.95230 7.14857 7.29343 7.41652 7.46350 7.82316 8.18713 8.29593 9.01116 9.43990 9.87205 10.57667 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.002837 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.898296 B = 9866.189089 C =11832.998376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.127 3.873 7 N -0.440 5.440 8 C -0.348 4.348 9 H 0.093 0.907 10 C 0.044 3.956 11 N -0.851 5.851 12 Si 0.911 3.089 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.474 3.526 17 O -0.595 6.595 18 C -0.087 4.087 19 C -0.047 4.047 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.086 4.086 23 C -0.027 4.027 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.105 4.105 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.272 0.728 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.119 0.881 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -6.478 -9.350 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.003 3.997 7 N -0.158 5.158 8 C -0.476 4.476 9 H 0.111 0.889 10 C -0.163 4.163 11 N -0.487 5.487 12 Si 0.737 3.263 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.263 3.737 17 O -0.480 6.480 18 C -0.126 4.126 19 C -0.047 4.047 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.086 4.086 23 C -0.027 4.027 24 C -0.195 4.195 25 C -0.200 4.200 26 C -0.194 4.194 27 C -0.140 4.140 28 C -0.123 4.123 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.137 0.863 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.381 -6.074 -9.739 12.677 hybrid contribution -0.135 -0.045 1.146 1.155 sum 5.246 -6.119 -8.593 11.781 Atomic orbital electron populations 1.23166 0.77408 1.03004 1.02328 1.86540 1.22721 1.34456 1.84680 1.24092 0.92411 0.80876 0.71723 1.90649 1.67264 1.36223 1.45035 1.21911 0.85806 1.03513 1.05111 1.21184 0.82251 0.90794 1.05462 1.43422 1.04406 1.62949 1.05065 1.19431 1.05486 1.32677 0.89978 0.88927 1.25366 0.96863 0.93560 1.00477 1.69919 1.27186 1.18460 1.33122 0.86198 0.78540 0.79200 0.82368 1.20127 1.20708 1.19218 1.20307 0.89017 0.80659 0.83674 1.90567 1.70426 1.55293 1.31714 1.20467 0.94688 1.04530 0.92952 1.19589 0.96320 0.93119 0.95678 1.20923 0.99237 0.97081 0.95255 1.20788 1.00949 0.97449 0.94301 1.19624 1.00756 0.93376 0.94809 1.19441 0.95288 0.96044 0.91944 1.21883 0.99124 0.99724 0.98755 1.21949 1.02024 0.95841 1.00177 1.21874 0.95573 1.00603 1.01301 1.21032 1.00568 0.97117 0.95236 1.20999 0.98881 0.98182 0.94230 0.92168 0.92196 0.88637 0.88438 0.87870 0.86404 0.91909 0.91791 0.89390 0.88554 0.86629 0.86881 0.92409 0.92768 0.92487 0.92323 0.92762 0.92224 0.92510 0.92754 0.92586 0.86266 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.10 10.57 -39.25 -0.41 -6.51 16 3 C 0.47 9.12 7.96 36.01 0.29 9.41 16 4 O -0.50 -11.18 15.73 -18.75 -0.29 -11.47 16 5 C -0.12 -2.50 6.11 -27.88 -0.17 -2.68 16 6 C 0.13 3.05 4.21 -4.04 -0.02 3.04 16 7 N -0.44 -10.62 2.55 -114.82 -0.29 -10.91 16 8 C -0.35 -8.32 8.70 -14.94 -0.13 -8.45 16 9 H 0.09 2.07 6.98 -52.48 -0.37 1.70 16 10 C 0.04 1.07 4.94 -17.47 -0.09 0.99 16 11 N -0.85 -22.14 11.31 55.50 0.63 -21.52 16 12 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 13 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 C 0.47 11.10 7.60 -10.99 -0.08 11.01 16 17 O -0.59 -15.36 15.69 5.55 0.09 -15.27 16 18 C -0.09 -1.67 4.49 -29.04 -0.13 -1.80 16 19 C -0.05 -0.84 4.37 -104.62 -0.46 -1.30 16 20 C -0.11 -1.75 9.70 -39.58 -0.38 -2.14 16 21 C -0.12 -1.69 8.71 -39.58 -0.34 -2.04 16 22 C -0.09 -1.19 4.76 -104.63 -0.50 -1.69 16 23 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 24 C -0.14 -1.44 8.29 37.16 0.31 -1.13 16 25 C -0.14 -1.40 7.13 37.16 0.27 -1.14 16 26 C -0.14 -1.29 8.29 37.15 0.31 -0.99 16 27 C -0.12 -1.81 8.98 -39.58 -0.36 -2.17 16 28 C -0.10 -1.79 9.70 -39.58 -0.38 -2.17 16 29 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.06 0.75 8.13 -51.92 -0.42 0.33 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 34 H 0.12 3.07 5.30 -51.93 -0.28 2.80 16 35 H 0.06 1.63 7.51 -51.93 -0.39 1.24 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.09 1.54 7.59 -51.93 -0.39 1.15 16 38 H 0.10 1.84 8.04 -51.92 -0.42 1.42 16 39 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.39 7.10 -52.49 -0.37 1.02 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 44 H 0.06 0.56 7.52 -51.93 -0.39 0.17 16 45 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 47 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.12 1.53 5.90 -52.48 -0.31 1.22 16 51 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 416.16 15.07 6.27 6.27 Total: -1.00 -30.19 416.16 -8.27 -38.46 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.28 Total: 9.49 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.94 Total: -2.15 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.33 Total: -32.43 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.62 Total: -33.26 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.19 -8.27 -38.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.874 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds