Wall clock time and date at job start Wed Apr 1 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00024 * 2 1 4 4 O 1.20822 * 119.99971 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99778 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.46957 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.46954 * 180.02562 * 6 5 3 8 8 C 1.37090 * 119.99724 * 265.55823 * 7 6 5 9 9 H 1.08004 * 119.99766 * 145.67634 * 8 7 6 10 10 C 1.38954 * 120.00346 * 325.66655 * 8 7 6 11 11 N 1.31408 * 120.00218 * 338.41936 * 10 8 7 12 12 Si 1.86797 * 119.99964 * 158.40813 * 10 8 7 13 13 H 1.48509 * 109.46847 * 90.00682 * 12 10 8 14 14 H 1.48496 * 109.47252 * 210.00562 * 12 10 8 15 15 H 1.48500 * 109.47529 * 330.00829 * 12 10 8 16 16 C 1.34780 * 120.00124 * 85.56218 * 7 6 5 17 17 O 1.21293 * 119.99776 * 359.97438 * 16 7 6 18 18 C 1.50693 * 120.00104 * 180.02562 * 16 7 6 19 19 C 1.50700 * 109.47361 * 179.97438 * 18 16 7 20 20 C 1.38236 * 119.99542 * 270.27391 * 19 18 16 21 21 C 1.38247 * 119.99526 * 180.27640 * 20 19 18 22 22 C 1.38229 * 120.00063 * 359.46581 * 21 20 19 23 23 C 1.50698 * 120.00156 * 180.27226 * 22 21 20 24 24 C 1.53004 * 109.46792 * 60.00345 * 23 22 21 25 25 C 1.52998 * 109.47200 * 180.02562 * 23 22 21 26 26 C 1.52994 * 109.47448 * 300.00609 * 23 22 21 27 27 C 1.38235 * 119.99982 * 0.26030 * 22 21 20 28 28 C 1.38233 * 120.00012 * 89.99604 * 19 18 16 29 29 H 1.09002 * 109.47415 * 300.00036 * 1 2 3 30 30 H 1.09010 * 109.47037 * 59.99709 * 1 2 3 31 31 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47060 * 59.99902 * 5 3 2 33 33 H 1.09000 * 109.47143 * 300.00382 * 5 3 2 34 34 H 1.08995 * 109.47368 * 60.00040 * 6 5 3 35 35 H 1.09000 * 109.46955 * 299.99598 * 6 5 3 36 36 H 0.96996 * 120.00711 * 179.97438 * 11 10 8 37 37 H 1.08999 * 109.47359 * 59.99326 * 18 16 7 38 38 H 1.09007 * 109.47128 * 299.99312 * 18 16 7 39 39 H 1.07994 * 120.00281 * 0.02562 * 20 19 18 40 40 H 1.07997 * 119.99651 * 179.74060 * 21 20 19 41 41 H 1.09003 * 109.47094 * 59.99675 * 24 23 22 42 42 H 1.09000 * 109.47165 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46900 * 300.00163 * 24 23 22 44 44 H 1.08999 * 109.46918 * 60.00335 * 25 23 22 45 45 H 1.09000 * 109.47294 * 180.02562 * 25 23 22 46 46 H 1.09002 * 109.47517 * 300.00417 * 25 23 22 47 47 H 1.09002 * 109.47154 * 59.99280 * 26 23 22 48 48 H 1.08997 * 109.47451 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.46944 * 299.99833 * 26 23 22 50 50 H 1.08004 * 120.00422 * 180.02562 * 27 22 21 51 51 H 1.07994 * 120.00456 * 359.97438 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 7 5.4632 2.8185 -0.0010 8 6 6.1439 2.9453 1.1822 9 1 7.1088 2.4755 1.3031 10 6 5.5925 3.6783 2.2260 11 7 4.6690 4.5802 1.9795 12 14 6.1636 3.3816 3.9795 13 1 7.3085 4.2767 4.2854 14 1 5.0486 3.6658 4.9182 15 1 6.5881 1.9664 4.1292 16 6 6.1400 2.7645 -1.1653 17 8 5.5377 2.6520 -2.2121 18 6 7.6449 2.8427 -1.1665 19 6 8.1511 2.7598 -2.5835 20 6 8.4400 1.5293 -3.1433 21 6 8.9098 1.4536 -4.4412 22 6 9.0803 2.6075 -5.1829 23 6 9.5867 2.5246 -6.5999 24 6 8.6203 1.6856 -7.4385 25 6 9.6843 3.9329 -7.1899 26 6 10.9700 1.8710 -6.6098 27 6 8.7861 3.8376 -4.6250 28 6 8.3212 3.9137 -3.3253 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9558 0.7808 -0.8909 33 1 3.9565 0.7804 0.8891 34 1 3.6109 3.2355 0.8906 35 1 3.6101 3.2366 -0.8894 36 1 4.2838 5.0916 2.7081 37 1 8.0522 2.0147 -0.5864 38 1 7.9600 3.7871 -0.7225 39 1 8.3024 0.6274 -2.5653 40 1 9.1395 0.4926 -4.8772 41 1 7.6347 2.1512 -7.4314 42 1 8.9863 1.6260 -8.4635 43 1 8.5512 0.6824 -7.0179 44 1 10.3729 4.5302 -6.5923 45 1 10.0501 3.8729 -8.2149 46 1 8.6989 4.3989 -7.1828 47 1 10.9009 0.8678 -6.1892 48 1 11.3364 1.8115 -7.6346 49 1 11.6584 2.4687 -6.0123 50 1 8.9189 4.7392 -5.2046 51 1 8.0909 4.8747 -2.8897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:09 Heat of formation + Delta-G solvation = -124.955414 kcal Electronic energy + Delta-G solvation = -30626.895665 eV Core-core repulsion = 26490.337660 eV Total energy + Delta-G solvation = -4136.558004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59789 -41.00300 -40.15938 -37.76071 -37.39195 -36.67088 -33.85748 -33.18123 -32.06522 -31.93186 -28.92314 -28.19842 -28.04387 -27.96109 -26.90021 -25.00823 -23.17696 -22.90938 -21.76514 -20.97335 -20.00798 -19.08845 -18.36669 -17.89360 -17.64332 -17.50697 -17.23107 -16.50593 -16.26604 -16.04046 -15.66773 -15.39424 -15.14539 -15.05277 -14.76381 -14.56100 -14.43116 -14.28827 -14.20187 -13.84060 -13.67162 -13.47572 -13.17523 -12.95062 -12.93491 -12.79633 -12.78607 -12.58901 -12.58443 -12.50235 -12.41254 -12.11334 -12.09413 -11.94296 -11.80999 -11.76783 -11.63303 -11.42072 -11.29525 -11.04204 -10.42205 -9.70631 -9.55940 -9.28741 -8.29596 -6.05530 0.52750 0.61233 1.10299 1.43824 1.51407 1.61968 1.65163 2.04026 2.34812 2.81118 3.05780 3.21243 3.72239 3.82339 3.87032 4.03732 4.09056 4.15687 4.17604 4.22407 4.24348 4.29274 4.29636 4.44620 4.53949 4.56684 4.58618 4.65224 4.67948 4.76145 4.83195 4.84714 4.90438 4.94294 4.97299 5.05626 5.07163 5.12486 5.23323 5.24724 5.26795 5.31664 5.39133 5.42310 5.50014 5.53299 5.66335 5.81043 5.85173 5.95735 6.22952 6.40399 6.67393 7.12922 7.57606 8.00813 8.72604 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010092 B = 0.002837 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.898296 B = 9866.189089 C =11832.998376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.133 3.867 7 N -0.450 5.450 8 C -0.356 4.356 9 H 0.110 0.890 10 C 0.001 3.999 11 N -0.892 5.892 12 Si 0.980 3.020 13 H -0.271 1.271 14 H -0.288 1.288 15 H -0.253 1.253 16 C 0.465 3.535 17 O -0.625 6.625 18 C -0.075 4.075 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.082 4.082 23 C -0.028 4.028 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.126 4.126 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.271 0.729 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.137 0.863 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -8.576 -9.972 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.008 3.992 7 N -0.168 5.168 8 C -0.483 4.483 9 H 0.128 0.872 10 C -0.202 4.202 11 N -0.529 5.529 12 Si 0.804 3.196 13 H -0.196 1.196 14 H -0.214 1.214 15 H -0.176 1.176 16 C 0.255 3.745 17 O -0.513 6.513 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.082 4.082 23 C -0.028 4.028 24 C -0.194 4.194 25 C -0.200 4.200 26 C -0.191 4.191 27 C -0.145 4.145 28 C -0.144 4.144 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.119 0.881 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.155 0.845 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.947 -8.203 -10.361 14.930 hybrid contribution -0.682 0.597 1.223 1.522 sum 6.265 -7.606 -9.138 13.439 Atomic orbital electron populations 1.23590 0.74762 1.05916 1.02428 1.86507 1.25174 1.32297 1.83850 1.23847 0.92126 0.81296 0.71030 1.90640 1.67848 1.37516 1.46732 1.21664 0.86803 1.00787 1.05980 1.20926 0.82635 0.92962 1.02628 1.43660 1.04423 1.63016 1.05695 1.19858 1.06115 1.32549 0.89802 0.87210 1.26243 0.96790 0.92922 1.04245 1.70053 1.28903 1.19787 1.34178 0.85131 0.77721 0.79733 0.77042 1.19642 1.21424 1.17634 1.21035 0.90789 0.79717 0.82941 1.90529 1.71511 1.56558 1.32677 1.20364 0.91503 1.04913 0.94627 1.19580 0.98206 0.94225 0.95259 1.21120 0.99456 0.96726 0.96318 1.21092 1.00000 0.98849 0.93576 1.20059 0.99099 0.92689 0.96335 1.19537 0.96214 0.97123 0.89923 1.21886 0.98230 0.99359 0.99956 1.21955 1.01704 0.95044 1.01323 1.21854 0.94282 1.00373 1.02554 1.21287 1.00074 0.98587 0.94515 1.21121 1.00029 0.97814 0.95443 0.92066 0.92233 0.84291 0.88091 0.86263 0.88477 0.95314 0.91971 0.87638 0.88941 0.85803 0.84402 0.93965 0.90607 0.92425 0.92178 0.90825 0.93104 0.92308 0.90826 0.92919 0.84484 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.61 10.57 -51.40 -0.54 -12.15 16 3 C 0.47 18.69 7.96 71.24 0.57 19.26 16 4 O -0.54 -24.53 15.73 21.98 0.35 -24.19 16 5 C -0.11 -4.65 6.11 29.85 0.18 -4.47 16 6 C 0.13 6.68 4.21 86.38 0.36 7.04 16 7 N -0.45 -22.34 2.55 -635.55 -1.62 -23.96 16 8 C -0.36 -17.12 8.70 84.04 0.73 -16.39 16 9 H 0.11 4.80 6.98 -2.91 -0.02 4.78 16 10 C 0.00 0.06 4.94 84.93 0.42 0.48 16 11 N -0.89 -47.90 11.31 21.66 0.24 -47.65 16 12 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 13 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.29 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 16 C 0.46 22.42 7.60 87.65 0.67 23.08 16 17 O -0.63 -33.57 15.69 -3.07 -0.05 -33.62 16 18 C -0.07 -2.93 4.49 29.10 0.13 -2.80 16 19 C -0.07 -2.64 4.37 -19.87 -0.09 -2.72 16 20 C -0.12 -3.82 9.70 22.27 0.22 -3.60 16 21 C -0.12 -3.23 8.71 22.27 0.19 -3.04 16 22 C -0.08 -2.16 4.76 -19.87 -0.09 -2.26 16 23 C -0.03 -0.55 0.85 -52.93 -0.05 -0.59 16 24 C -0.14 -2.53 8.29 71.98 0.60 -1.94 16 25 C -0.14 -2.49 7.13 71.98 0.51 -1.97 16 26 C -0.13 -2.13 8.29 71.98 0.60 -1.53 16 27 C -0.13 -3.75 8.98 22.27 0.20 -3.55 16 28 C -0.13 -4.41 9.70 22.27 0.22 -4.20 16 29 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 30 H 0.06 1.42 8.13 -2.38 -0.02 1.40 16 31 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 4.06 8.14 -2.38 -0.02 4.04 16 33 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 34 H 0.10 5.32 5.30 -2.39 -0.01 5.31 16 35 H 0.03 1.59 7.51 -2.39 -0.02 1.57 16 36 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.11 3.67 7.59 -2.39 -0.02 3.65 16 38 H 0.09 3.63 8.04 -2.38 -0.02 3.62 16 39 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.14 3.04 7.10 -2.91 -0.02 3.02 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.05 7.39 -2.39 -0.02 1.03 16 44 H 0.06 1.02 7.52 -2.39 -0.02 1.00 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.97 7.51 -2.39 -0.02 0.95 16 47 H 0.06 0.92 7.39 -2.39 -0.02 0.90 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.14 3.43 5.90 -2.91 -0.02 3.41 16 51 H 0.11 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.68 416.16 7.88 -59.79 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.91 Total: 39.11 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.56 Total: 2.61 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.38 Total: -71.61 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -0.25 Total: -69.96 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.68 7.88 -59.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.161 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds