Wall clock time and date at job start Wed Apr 1 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99939 * 2 1 4 4 H 1.48494 * 109.46945 * 240.00261 * 3 2 1 5 5 H 1.48496 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47069 * 120.00033 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46691 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46822 * 180.02562 * 10 9 7 12 12 O 1.20819 * 119.99914 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99926 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99774 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46981 * 179.97438 * 14 13 11 16 16 O 1.42900 * 109.50449 * 300.08274 * 15 14 13 17 17 C 1.53128 * 109.53384 * 60.17935 * 15 14 13 18 18 C 1.53120 * 109.15887 * 177.61562 * 17 15 14 19 19 C 1.53039 * 109.27833 * 302.34387 * 18 17 15 20 20 N 1.46845 * 109.52437 * 59.17925 * 19 18 17 21 21 C 1.46894 * 111.00000 * 174.15814 * 20 19 18 22 22 C 1.50698 * 109.47385 * 294.21020 * 21 20 19 23 23 C 1.38228 * 120.00195 * 270.21139 * 22 21 20 24 24 C 1.38238 * 120.00114 * 180.26174 * 23 22 21 25 25 C 1.38234 * 119.99675 * 359.50218 * 24 23 22 26 26 C 1.38235 * 120.00220 * 0.28720 * 25 24 23 27 27 C 1.38234 * 119.99720 * 89.99924 * 22 21 20 28 28 C 1.46847 * 111.20229 * 298.26115 * 20 19 18 29 29 H 0.97007 * 120.00037 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46842 * 60.00344 * 9 7 2 31 31 H 1.08996 * 109.46769 * 299.99680 * 9 7 2 32 32 H 1.08999 * 109.47334 * 59.99877 * 10 9 7 33 33 H 1.09001 * 109.47286 * 299.99939 * 10 9 7 34 34 H 1.08997 * 109.47298 * 60.00299 * 14 13 11 35 35 H 1.08996 * 109.47290 * 299.99676 * 14 13 11 36 36 H 0.96702 * 114.00088 * 59.91753 * 16 15 14 37 37 H 1.09000 * 109.51828 * 297.51819 * 17 15 14 38 38 H 1.08997 * 109.52509 * 57.64402 * 17 15 14 39 39 H 1.08997 * 109.50098 * 62.28481 * 18 17 15 40 40 H 1.08993 * 109.50140 * 182.36187 * 18 17 15 41 41 H 1.09001 * 109.46341 * 299.16409 * 19 18 17 42 42 H 1.08996 * 109.46119 * 179.19386 * 19 18 17 43 43 H 1.09010 * 109.47013 * 174.21129 * 21 20 19 44 44 H 1.09000 * 109.46834 * 54.21450 * 21 20 19 45 45 H 1.08004 * 120.00270 * 0.03576 * 23 22 21 46 46 H 1.08002 * 120.00519 * 179.78838 * 24 23 22 47 47 H 1.07999 * 120.00009 * 180.25939 * 25 24 23 48 48 H 1.07996 * 120.00471 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00294 * 0.02562 * 27 22 21 50 50 H 1.08998 * 109.46552 * 181.75773 * 28 20 19 51 51 H 1.09002 * 109.45765 * 301.73839 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2836 -4.9671 0.0000 13 8 2.1630 -6.1296 0.0003 14 6 1.3721 -7.3473 0.0002 15 6 2.3042 -8.5607 0.0001 16 8 3.1302 -8.5277 -1.1655 17 6 3.1853 -8.5297 1.2521 18 6 4.0721 -9.7777 1.2736 19 6 3.1881 -11.0264 1.2366 20 7 2.3654 -11.0095 0.0203 21 6 1.6055 -12.2589 -0.1188 22 6 2.5589 -13.4047 -0.3402 23 6 2.9323 -13.7550 -1.6242 24 6 3.8026 -14.8096 -1.8276 25 6 4.3075 -15.5073 -0.7464 26 6 3.9376 -15.1543 0.5379 27 6 3.0635 -14.1028 0.7410 28 6 1.4714 -9.8447 0.0000 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.8720 -3.6042 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 0.7437 -7.3724 -0.8899 35 1 0.7431 -7.3721 0.8900 36 1 3.6867 -7.7395 -1.2310 37 1 3.8118 -7.6379 1.2346 38 1 2.5547 -8.5144 2.1410 39 1 4.7299 -9.7717 0.4045 40 1 4.6717 -9.7825 2.1838 41 1 2.5402 -11.0389 2.1130 42 1 3.8169 -11.9167 1.2373 43 1 0.9287 -12.1797 -0.9696 44 1 1.0288 -12.4362 0.7890 45 1 2.5412 -13.2070 -2.4688 46 1 4.0917 -15.0854 -2.8310 47 1 4.9907 -16.3285 -0.9050 48 1 4.3317 -15.6997 1.3826 49 1 2.7741 -13.8273 1.7444 50 1 0.8535 -9.8767 -0.8973 51 1 0.8317 -9.8625 0.8824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349702458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:02 Heat of formation + Delta-G solvation = -121.524521 kcal Electronic energy + Delta-G solvation = -30044.024535 eV Core-core repulsion = 25907.615305 eV Total energy + Delta-G solvation = -4136.409230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.52810 -39.87994 -39.06350 -36.72290 -35.65362 -33.61516 -33.51502 -31.62875 -31.30227 -31.20770 -30.80952 -27.02158 -26.70006 -25.57554 -23.54381 -22.99013 -22.43263 -21.90462 -20.98802 -20.04717 -19.83197 -17.40325 -17.10309 -16.89169 -16.58043 -16.17863 -16.15792 -15.68396 -15.63223 -15.27394 -14.81869 -14.55203 -14.50116 -14.41720 -14.10463 -13.72788 -13.66229 -13.25136 -12.93027 -12.80442 -12.75348 -12.50136 -12.27430 -12.20275 -12.12584 -11.89915 -11.44787 -11.29893 -11.25563 -11.21010 -10.99408 -10.96118 -10.70254 -10.62468 -10.40032 -10.07737 -9.99890 -9.89542 -9.56456 -9.21813 -9.20713 -9.10833 -8.55346 -8.39713 -6.03533 -4.08804 1.00599 1.10447 2.77199 2.88286 3.31510 3.35667 3.36749 3.38998 3.80051 4.01886 4.36008 4.42279 4.48556 4.50603 4.55734 4.64158 4.69499 4.79175 4.88718 4.95354 4.98854 5.13687 5.17186 5.23984 5.25017 5.28613 5.31863 5.32583 5.36208 5.43765 5.59128 5.62720 5.64202 5.68162 5.73647 5.76661 6.02158 6.07454 6.12468 6.13590 6.15731 6.20805 6.30975 6.56843 6.66059 6.74419 6.78181 6.87895 7.63232 7.64916 7.69918 7.95222 8.21031 8.36561 8.97994 9.55447 11.07348 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.001611 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.224906 B =17375.659546 C =17510.047387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.102 4.102 11 C 0.458 3.542 12 O -0.504 6.504 13 O -0.366 6.366 14 C 0.037 3.963 15 C 0.149 3.851 16 O -0.538 6.538 17 C -0.148 4.148 18 C -0.111 4.111 19 C 0.050 3.950 20 N -0.517 5.517 21 C 0.092 3.908 22 C -0.074 4.074 23 C -0.095 4.095 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.115 4.115 28 C 0.072 3.928 29 H 0.263 0.737 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.380 0.620 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.086 0.914 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.982 -31.794 1.431 32.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.140 4.140 11 C 0.301 3.699 12 O -0.390 6.390 13 O -0.284 6.284 14 C -0.038 4.038 15 C 0.107 3.893 16 O -0.343 6.343 17 C -0.185 4.185 18 C -0.149 4.149 19 C -0.077 4.077 20 N -0.241 5.241 21 C -0.035 4.035 22 C -0.075 4.075 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.056 4.056 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.227 0.773 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.104 0.896 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.440 -32.225 0.924 33.085 hybrid contribution -0.060 1.365 0.880 1.625 sum 7.379 -30.860 1.803 31.781 Atomic orbital electron populations 1.69981 1.06107 1.26902 1.49751 1.25016 0.94852 0.99333 0.95059 0.86596 0.79511 0.82869 0.78646 1.20139 1.21243 1.20171 1.21112 0.93036 0.90634 1.52061 0.92338 1.19019 0.93231 0.89293 0.98886 1.21772 1.00674 0.87544 1.03997 1.24795 0.87971 0.85511 0.71592 1.90640 1.15948 1.87574 1.44849 1.86465 1.42042 1.14865 1.85014 1.23627 0.94288 0.82714 1.03166 1.21106 0.89991 0.91561 0.86654 1.86570 1.58169 1.47309 1.42257 1.22262 0.99273 0.99450 0.97555 1.21498 0.97887 0.93044 1.02479 1.22237 0.96203 0.99506 0.89771 1.61760 1.23358 1.00573 1.38440 1.21059 0.93641 0.87455 1.01354 1.19698 0.98289 0.96082 0.93413 1.21054 0.97266 0.96402 0.96657 1.21176 0.97693 0.96112 0.98964 1.21154 1.00034 1.00005 0.92832 1.21103 0.98321 0.97541 0.97121 1.21057 0.97869 0.96111 0.98340 1.21934 0.93388 0.88447 1.01839 0.92773 0.95588 0.95625 0.88968 0.88884 0.90618 0.90954 0.77265 0.90154 0.91458 0.90302 0.91528 0.95185 0.90142 0.89678 0.93974 0.85865 0.86101 0.86281 0.86232 0.86447 0.89574 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 10 C -0.10 -2.03 5.75 -27.88 -0.16 -2.19 16 11 C 0.46 8.73 7.96 36.01 0.29 9.02 16 12 O -0.50 -11.32 15.73 -18.74 -0.29 -11.62 16 13 O -0.37 -5.57 9.11 -43.21 -0.39 -5.96 16 14 C 0.04 0.49 4.58 37.16 0.17 0.66 16 15 C 0.15 1.60 0.82 -90.53 -0.07 1.53 16 16 O -0.54 -6.34 12.31 -43.80 -0.54 -6.88 16 17 C -0.15 -1.45 4.81 -26.60 -0.13 -1.58 16 18 C -0.11 -1.00 5.94 -26.65 -0.16 -1.15 16 19 C 0.05 0.44 5.16 -3.83 -0.02 0.42 16 20 N -0.52 -4.83 4.53 -236.12 -1.07 -5.90 16 21 C 0.09 0.73 5.12 -4.98 -0.03 0.71 16 22 C -0.07 -0.61 4.89 -104.63 -0.51 -1.13 16 23 C -0.10 -0.79 9.70 -39.59 -0.38 -1.17 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 27 C -0.12 -0.87 7.88 -39.58 -0.31 -1.18 16 28 C 0.07 0.69 4.43 -3.83 -0.02 0.68 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 35 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.38 3.84 8.57 45.56 0.39 4.23 16 37 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.69 5.75 -51.93 -0.30 0.39 16 43 H 0.08 0.64 7.93 -51.92 -0.41 0.22 16 44 H 0.04 0.30 8.07 -51.93 -0.42 -0.11 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.74 7.95 -52.49 -0.42 0.32 16 50 H 0.09 0.83 8.02 -51.93 -0.42 0.41 16 51 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 413.27 15.07 6.23 6.23 Total: -1.00 -32.89 413.27 -11.25 -44.14 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.84 Total: 1.72 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.06 Total: -11.89 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: -0.33 Total: -32.01 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.23 Total: -24.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.89 -11.25 -44.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349702458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.384 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds