Wall clock time and date at job start Wed Apr 1 2020 04:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99939 * 2 1 4 4 H 1.48494 * 109.46945 * 240.00261 * 3 2 1 5 5 H 1.48496 * 109.46816 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47069 * 120.00033 * 3 2 1 7 7 C 1.37875 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00396 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99652 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46691 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46822 * 180.02562 * 10 9 7 12 12 O 1.20819 * 119.99914 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99926 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99774 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46981 * 179.97438 * 14 13 11 16 16 O 1.42900 * 109.50449 * 300.08274 * 15 14 13 17 17 C 1.53128 * 109.53384 * 60.17935 * 15 14 13 18 18 C 1.53120 * 109.15887 * 177.61562 * 17 15 14 19 19 C 1.53039 * 109.27833 * 302.34387 * 18 17 15 20 20 N 1.46845 * 109.52437 * 59.17925 * 19 18 17 21 21 C 1.46894 * 111.00000 * 174.15814 * 20 19 18 22 22 C 1.50698 * 109.47385 * 294.21020 * 21 20 19 23 23 C 1.38228 * 120.00195 * 270.21139 * 22 21 20 24 24 C 1.38238 * 120.00114 * 180.26174 * 23 22 21 25 25 C 1.38234 * 119.99675 * 359.50218 * 24 23 22 26 26 C 1.38235 * 120.00220 * 0.28720 * 25 24 23 27 27 C 1.38234 * 119.99720 * 89.99924 * 22 21 20 28 28 C 1.46847 * 111.20229 * 298.26115 * 20 19 18 29 29 H 0.97007 * 120.00037 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46842 * 60.00344 * 9 7 2 31 31 H 1.08996 * 109.46769 * 299.99680 * 9 7 2 32 32 H 1.08999 * 109.47334 * 59.99877 * 10 9 7 33 33 H 1.09001 * 109.47286 * 299.99939 * 10 9 7 34 34 H 1.08997 * 109.47298 * 60.00299 * 14 13 11 35 35 H 1.08996 * 109.47290 * 299.99676 * 14 13 11 36 36 H 0.96702 * 114.00088 * 59.91753 * 16 15 14 37 37 H 1.09000 * 109.51828 * 297.51819 * 17 15 14 38 38 H 1.08997 * 109.52509 * 57.64402 * 17 15 14 39 39 H 1.08997 * 109.50098 * 62.28481 * 18 17 15 40 40 H 1.08993 * 109.50140 * 182.36187 * 18 17 15 41 41 H 1.09001 * 109.46341 * 299.16409 * 19 18 17 42 42 H 1.08996 * 109.46119 * 179.19386 * 19 18 17 43 43 H 1.09010 * 109.47013 * 174.21129 * 21 20 19 44 44 H 1.09000 * 109.46834 * 54.21450 * 21 20 19 45 45 H 1.08004 * 120.00270 * 0.03576 * 23 22 21 46 46 H 1.08002 * 120.00519 * 179.78838 * 24 23 22 47 47 H 1.07999 * 120.00009 * 180.25939 * 25 24 23 48 48 H 1.07996 * 120.00471 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00294 * 0.02562 * 27 22 21 50 50 H 1.08998 * 109.46552 * 181.75773 * 28 20 19 51 51 H 1.09002 * 109.45765 * 301.73839 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2836 -4.9671 0.0000 13 8 2.1630 -6.1296 0.0003 14 6 1.3721 -7.3473 0.0002 15 6 2.3042 -8.5607 0.0001 16 8 3.1302 -8.5277 -1.1655 17 6 3.1853 -8.5297 1.2521 18 6 4.0721 -9.7777 1.2736 19 6 3.1881 -11.0264 1.2366 20 7 2.3654 -11.0095 0.0203 21 6 1.6055 -12.2589 -0.1188 22 6 2.5589 -13.4047 -0.3402 23 6 2.9323 -13.7550 -1.6242 24 6 3.8026 -14.8096 -1.8276 25 6 4.3075 -15.5073 -0.7464 26 6 3.9376 -15.1543 0.5379 27 6 3.0635 -14.1028 0.7410 28 6 1.4714 -9.8447 0.0000 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 2.8720 -3.6042 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 0.7437 -7.3724 -0.8899 35 1 0.7431 -7.3721 0.8900 36 1 3.6867 -7.7395 -1.2310 37 1 3.8118 -7.6379 1.2346 38 1 2.5547 -8.5144 2.1410 39 1 4.7299 -9.7717 0.4045 40 1 4.6717 -9.7825 2.1838 41 1 2.5402 -11.0389 2.1130 42 1 3.8169 -11.9167 1.2373 43 1 0.9287 -12.1797 -0.9696 44 1 1.0288 -12.4362 0.7890 45 1 2.5412 -13.2070 -2.4688 46 1 4.0917 -15.0854 -2.8310 47 1 4.9907 -16.3285 -0.9050 48 1 4.3317 -15.6997 1.3826 49 1 2.7741 -13.8273 1.7444 50 1 0.8535 -9.8767 -0.8973 51 1 0.8317 -9.8625 0.8824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349702458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:01 Heat of formation + Delta-G solvation = -141.249403 kcal Electronic energy + Delta-G solvation = -30044.879870 eV Core-core repulsion = 25907.615305 eV Total energy + Delta-G solvation = -4137.264565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.70140 -40.82154 -39.82782 -37.83248 -36.77808 -35.65035 -34.23757 -33.19971 -32.30601 -31.80750 -31.66277 -28.48593 -27.34613 -27.08179 -24.40295 -24.02054 -23.47473 -22.84291 -21.67412 -21.45584 -20.82399 -19.09470 -18.20344 -17.78955 -17.73065 -17.60110 -17.20018 -16.50971 -16.49284 -16.30314 -16.22566 -15.63324 -15.40574 -15.33960 -15.11977 -14.76519 -14.29700 -14.24872 -14.16533 -13.95200 -13.75686 -13.52016 -13.37332 -13.33238 -13.19585 -12.88961 -12.79328 -12.67714 -12.53879 -12.15041 -12.00376 -11.96378 -11.81361 -11.76152 -11.72842 -11.72012 -11.50915 -11.35001 -11.18877 -10.76910 -10.56781 -9.75712 -9.67542 -9.21713 -8.19709 -6.33666 0.45146 0.55420 1.22459 1.43476 1.47839 1.54713 1.59947 2.43214 2.71329 3.09929 3.14206 3.21917 3.55703 3.70595 3.72808 3.84502 3.95891 4.00399 4.12916 4.17402 4.20414 4.26514 4.33196 4.34103 4.38031 4.45752 4.46823 4.54635 4.55735 4.64061 4.70858 4.74727 4.77118 4.83694 4.90320 4.92934 5.03478 5.15433 5.20557 5.24132 5.32564 5.39281 5.47018 5.55009 5.60248 5.67345 5.74261 5.80467 6.01942 6.11947 6.12999 6.17409 6.76401 6.81643 6.85993 7.36813 8.92568 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.001611 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.224906 B =17375.659546 C =17510.047387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.037 3.963 10 C -0.093 4.093 11 C 0.467 3.533 12 O -0.545 6.545 13 O -0.348 6.348 14 C 0.035 3.965 15 C 0.155 3.845 16 O -0.548 6.548 17 C -0.145 4.145 18 C -0.106 4.106 19 C 0.052 3.948 20 N -0.528 5.528 21 C 0.094 3.906 22 C -0.085 4.085 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.122 4.122 28 C 0.071 3.929 29 H 0.263 0.737 30 H -0.011 1.011 31 H -0.010 1.010 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.385 0.615 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.051 0.949 45 H 0.121 0.879 46 H 0.134 0.866 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -32.711 2.152 34.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.000 4.000 10 C -0.130 4.130 11 C 0.312 3.688 12 O -0.435 6.435 13 O -0.265 6.265 14 C -0.040 4.040 15 C 0.114 3.886 16 O -0.355 6.355 17 C -0.183 4.183 18 C -0.144 4.144 19 C -0.076 4.076 20 N -0.253 5.253 21 C -0.033 4.033 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.057 4.057 29 H 0.072 0.928 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.234 0.766 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.139 0.861 46 H 0.152 0.848 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.146 0.854 50 H 0.101 0.899 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.808 -33.175 1.643 34.633 hybrid contribution -0.788 1.528 0.638 1.833 sum 9.020 -31.647 2.281 32.986 Atomic orbital electron populations 1.70153 1.08237 1.27963 1.51166 1.26089 0.95704 1.03838 0.94487 0.85373 0.78050 0.77356 0.79477 1.18757 1.21399 1.18707 1.21622 0.94146 0.91275 1.51267 0.90347 1.18806 0.93742 0.92067 0.95407 1.21515 0.99269 0.85840 1.06369 1.24526 0.87146 0.86437 0.70650 1.90637 1.17665 1.88250 1.46927 1.86427 1.41407 1.14559 1.84100 1.23890 0.94861 0.82267 1.02973 1.21128 0.89712 0.90833 0.86972 1.86567 1.58325 1.47785 1.42820 1.22241 0.99194 0.99813 0.97036 1.21459 0.97640 0.92690 1.02602 1.22239 0.96196 0.99335 0.89795 1.61733 1.23647 1.00830 1.39041 1.21059 0.93604 0.86861 1.01768 1.19784 0.98700 0.96409 0.93684 1.21191 0.98013 0.97089 0.96844 1.21414 0.97544 0.95966 0.99987 1.21455 1.00122 1.00373 0.92747 1.21405 0.97980 0.97420 0.97857 1.21241 0.97922 0.96224 0.98656 1.21927 0.93351 0.88124 1.02278 0.92793 0.99303 0.99206 0.86437 0.86477 0.91481 0.90620 0.76590 0.90589 0.90899 0.91644 0.90031 0.94328 0.89968 0.89701 0.93090 0.86091 0.84821 0.84411 0.84354 0.85351 0.89928 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.04 1.98 4.26 29.85 0.13 2.11 16 10 C -0.09 -3.61 5.75 29.85 0.17 -3.43 16 11 C 0.47 17.74 7.96 71.24 0.57 18.31 16 12 O -0.55 -25.16 15.73 21.99 0.35 -24.81 16 13 O -0.35 -10.24 9.11 -47.63 -0.43 -10.67 16 14 C 0.04 0.89 4.58 71.98 0.33 1.22 16 15 C 0.16 3.18 0.82 -10.74 -0.01 3.17 16 16 O -0.55 -12.44 12.31 -140.79 -1.73 -14.18 16 17 C -0.15 -2.61 4.81 30.68 0.15 -2.46 16 18 C -0.11 -1.71 5.94 30.65 0.18 -1.53 16 19 C 0.05 0.80 5.16 86.33 0.45 1.25 16 20 N -0.53 -9.26 4.53 -900.94 -4.08 -13.34 16 21 C 0.09 1.41 5.12 85.56 0.44 1.85 16 22 C -0.09 -1.33 4.89 -19.87 -0.10 -1.43 16 23 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 24 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 25 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 26 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 27 C -0.12 -1.66 7.88 22.27 0.18 -1.48 16 28 C 0.07 1.30 4.43 86.33 0.38 1.68 16 29 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 30 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 31 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 32 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.12 4.02 8.14 -2.39 -0.02 4.00 16 34 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 35 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 36 H 0.39 7.40 8.57 -74.06 -0.63 6.76 16 37 H 0.08 1.44 7.77 -2.39 -0.02 1.42 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.25 7.80 -2.39 -0.02 1.23 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 1.26 5.75 -2.39 -0.01 1.25 16 43 H 0.08 1.24 7.93 -2.38 -0.02 1.22 16 44 H 0.05 0.67 8.07 -2.39 -0.02 0.65 16 45 H 0.12 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.13 1.41 8.06 -2.91 -0.02 1.38 16 47 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 49 H 0.13 1.38 7.95 -2.91 -0.02 1.36 16 50 H 0.08 1.55 8.02 -2.39 -0.02 1.53 16 51 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.11 413.27 1.13 -70.99 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.27 Total: 20.61 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.44 Total: -16.34 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -3.80 Total: -70.96 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.82 Total: -49.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.11 1.13 -70.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349702458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.262 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds