Wall clock time and date at job start Wed Apr 1 2020 05:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47082 * 2 1 4 4 N 1.46504 * 109.46898 * 119.99945 * 2 1 3 5 5 C 1.34776 * 119.99932 * 98.55410 * 4 2 1 6 6 O 1.21274 * 120.00124 * 186.30757 * 5 4 2 7 7 C 1.50699 * 119.99907 * 6.31257 * 5 4 2 8 8 H 1.08990 * 109.47573 * 321.30694 * 7 5 4 9 9 C 1.53006 * 109.47012 * 81.30874 * 7 5 4 10 10 O 1.45200 * 109.46985 * 201.30177 * 7 5 4 11 11 C 1.34711 * 116.99695 * 149.99692 * 10 7 5 12 12 O 1.21465 * 119.99921 * 0.02562 * 11 10 7 13 13 C 1.47767 * 119.99944 * 180.02562 * 11 10 7 14 14 C 1.39972 * 120.02757 * 359.72562 * 13 11 10 15 15 C 1.38319 * 120.35026 * 179.76130 * 14 13 11 16 16 C 1.37760 * 120.41805 * 0.51883 * 15 14 13 17 17 C 1.40756 * 120.05056 * 359.74168 * 16 15 14 18 18 C 1.41446 * 120.17740 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99661 * 330.24799 * 18 17 16 20 20 C 1.39932 * 119.99806 * 150.24076 * 18 17 16 21 21 N 1.30823 * 120.00209 * 349.06543 * 20 18 17 22 22 Si 1.86808 * 119.99633 * 169.06585 * 20 18 17 23 23 H 1.48504 * 109.47028 * 60.00167 * 22 20 18 24 24 H 1.48497 * 109.47056 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47043 * 300.00299 * 22 20 18 26 26 C 1.39046 * 120.03287 * 180.02562 * 13 11 10 27 27 C 1.46496 * 119.99759 * 278.55114 * 4 2 1 28 28 C 1.52997 * 109.47374 * 291.54826 * 27 4 2 29 29 C 1.52999 * 109.47256 * 51.55161 * 27 4 2 30 30 H 1.08996 * 109.47115 * 305.96378 * 1 2 3 31 31 H 1.08998 * 109.47121 * 65.96983 * 1 2 3 32 32 H 1.09001 * 109.47301 * 185.96412 * 1 2 3 33 33 H 1.09000 * 109.47240 * 239.99653 * 2 1 3 34 34 H 1.09001 * 109.47296 * 163.83103 * 3 2 1 35 35 H 1.09002 * 109.47464 * 283.83013 * 3 2 1 36 36 H 1.09005 * 109.47405 * 43.83048 * 3 2 1 37 37 H 1.09004 * 109.46733 * 175.17422 * 9 7 5 38 38 H 1.08996 * 109.46852 * 295.16936 * 9 7 5 39 39 H 1.09001 * 109.47369 * 55.17308 * 9 7 5 40 40 H 1.07994 * 119.82693 * 0.02562 * 14 13 11 41 41 H 1.07997 * 119.79366 * 180.26009 * 15 14 13 42 42 H 1.08004 * 119.97326 * 179.76304 * 16 15 14 43 43 H 0.97001 * 119.99598 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.20299 * 359.95760 * 26 13 11 45 45 H 1.09005 * 109.46691 * 171.54972 * 27 4 2 46 46 H 1.08998 * 109.47017 * 74.95192 * 28 27 4 47 47 H 1.09001 * 109.47266 * 194.94989 * 28 27 4 48 48 H 1.08999 * 109.47441 * 314.95224 * 28 27 4 49 49 H 1.08998 * 109.46992 * 70.01516 * 29 27 4 50 50 H 1.08993 * 109.47056 * 190.01381 * 29 27 4 51 51 H 1.09002 * 109.47013 * 310.01790 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.4066 -1.9789 1.1192 6 8 2.7018 -2.5846 2.1276 7 6 2.4740 -2.6668 -0.2199 8 1 1.6334 -2.3468 -0.8355 9 6 3.7856 -2.2992 -0.9167 10 8 2.4142 -4.1050 -0.0288 11 6 1.8549 -4.8304 -1.0165 12 8 1.4293 -4.2768 -2.0104 13 6 1.7591 -6.2996 -0.8910 14 6 2.2546 -6.9387 0.2515 15 6 2.1640 -8.3131 0.3782 16 6 1.5951 -9.0698 -0.6225 17 6 1.0962 -8.4455 -1.7812 18 6 0.5111 -9.2199 -2.8102 19 1 0.8405 -10.2350 -2.9759 20 6 -0.4946 -8.6707 -3.6133 21 7 -1.0438 -7.5296 -3.2850 22 14 -1.0531 -9.5670 -5.1542 23 1 -1.5797 -10.9055 -4.7848 24 1 -2.1218 -8.7826 -5.8233 25 1 0.0979 -9.7258 -6.0790 26 6 1.1824 -7.0491 -1.9103 27 6 2.0845 0.0192 2.4760 28 6 3.1684 1.0968 2.4061 29 6 0.7326 0.6738 2.7668 30 1 -0.3633 0.6035 0.8317 31 1 -0.3633 0.4185 -0.9386 32 1 -0.3634 -1.0221 0.1068 33 1 1.8933 -0.5139 -0.8899 34 1 3.0916 1.4560 0.2862 35 1 1.9295 1.8669 -0.9979 36 1 1.4621 2.0322 0.7117 37 1 3.8739 -2.8627 -1.8456 38 1 3.7930 -1.2318 -1.1372 39 1 4.6242 -2.5412 -0.2638 40 1 2.7061 -6.3552 1.0402 41 1 2.5455 -8.7965 1.2655 42 1 1.5316 -10.1429 -0.5177 43 1 -1.7408 -7.1488 -3.8419 44 1 0.8025 -6.5607 -2.7956 45 1 2.3248 -0.6868 3.2710 46 1 2.8088 1.9356 1.8101 47 1 3.4040 1.4411 3.4131 48 1 4.0646 0.6814 1.9452 49 1 -0.0036 -0.0977 2.9924 50 1 0.8296 1.3442 3.6206 51 1 0.4085 1.2412 1.8943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525562.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:22 Heat of formation + Delta-G solvation = -87.385089 kcal Electronic energy + Delta-G solvation = -31430.087234 eV Core-core repulsion = 27295.158401 eV Total energy + Delta-G solvation = -4134.928833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89419 -39.68871 -37.67884 -37.23471 -35.79446 -33.77316 -33.60115 -32.11755 -30.96731 -30.08615 -29.49702 -28.72557 -26.40721 -25.47577 -25.00881 -23.29953 -22.21858 -21.35659 -20.95259 -19.90897 -19.30991 -18.12533 -17.32422 -16.71057 -16.02116 -15.82139 -15.49505 -15.30138 -14.86882 -14.77504 -14.62212 -14.39909 -13.89176 -13.68922 -13.64183 -13.35603 -13.15192 -13.06150 -13.00855 -12.82815 -12.61967 -12.50581 -12.30799 -11.98614 -11.91023 -11.68703 -11.64709 -11.55101 -11.45742 -11.17057 -11.12511 -11.11719 -10.76507 -10.54938 -10.52267 -10.32485 -10.22180 -9.73470 -9.64180 -9.47595 -9.26763 -8.90477 -7.75225 -7.49825 -6.76207 -4.44807 1.93533 2.35594 2.54712 2.79579 3.07045 3.09207 3.13530 3.34157 3.55565 3.92383 4.23091 4.41661 4.60999 4.62633 4.69914 4.83412 4.84478 4.89763 4.95356 5.00540 5.21547 5.25585 5.27144 5.28823 5.39327 5.45330 5.50180 5.52342 5.60738 5.63060 5.65541 5.72145 5.75365 5.93249 5.95087 6.00897 6.10289 6.13851 6.41868 6.43443 6.60474 6.86832 6.94008 6.96121 7.16956 7.19186 7.31090 7.68224 7.74383 7.90946 8.05167 8.10529 8.44625 8.48653 8.77561 8.80793 10.19400 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002554 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.227481 B =10960.326884 C =11834.687813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.173 4.173 4 N -0.603 5.603 5 C 0.523 3.477 6 O -0.513 6.513 7 C 0.067 3.933 8 H 0.104 0.896 9 C -0.162 4.162 10 O -0.328 6.328 11 C 0.513 3.487 12 O -0.517 6.517 13 C -0.119 4.119 14 C -0.182 4.182 15 C -0.108 4.108 16 C -0.193 4.193 17 C 0.094 3.906 18 C -0.464 4.464 19 H 0.081 0.919 20 C 0.072 3.928 21 N -0.798 5.798 22 Si 0.914 3.086 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.080 4.080 27 C 0.135 3.865 28 C -0.178 4.178 29 C -0.175 4.175 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.283 0.717 44 H 0.136 0.864 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 19.275 5.582 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.020 3.980 3 C -0.230 4.230 4 N -0.339 5.339 5 C 0.310 3.690 6 O -0.387 6.387 7 C 0.007 3.993 8 H 0.122 0.878 9 C -0.219 4.219 10 O -0.244 6.244 11 C 0.360 3.640 12 O -0.407 6.407 13 C -0.120 4.120 14 C -0.202 4.202 15 C -0.126 4.126 16 C -0.213 4.213 17 C 0.092 3.908 18 C -0.493 4.493 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.424 5.424 22 Si 0.738 3.262 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.099 4.099 27 C 0.032 3.968 28 C -0.236 4.236 29 C -0.232 4.232 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.154 0.846 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.186 19.288 5.768 20.562 hybrid contribution -0.514 -0.219 -0.774 0.954 sum 3.673 19.069 4.994 20.051 Atomic orbital electron populations 1.22651 0.94790 1.03402 1.03175 1.21268 0.94823 0.94085 0.87779 1.22696 1.02590 0.95049 1.02710 1.48108 1.64967 1.10923 1.09926 1.20269 0.76760 0.81528 0.90460 1.90712 1.47249 1.63865 1.36873 1.22359 1.01433 0.80778 0.94681 0.87813 1.22114 0.95803 1.02305 1.01683 1.86770 1.73935 1.17529 1.46215 1.22019 0.72948 0.89310 0.79719 1.90742 1.46319 1.72744 1.30846 1.18815 1.07918 0.86264 0.99004 1.20684 1.07024 0.94469 0.98036 1.20543 1.00479 0.93515 0.98098 1.21281 1.06993 0.98456 0.94521 1.17548 0.90250 0.91370 0.91633 1.19495 1.16972 1.00126 1.12751 0.90104 1.25920 0.95417 0.94787 0.98450 1.69738 1.20110 1.16673 1.35867 0.86274 0.78856 0.79980 0.81059 1.19009 1.20305 1.18824 1.21673 0.96759 0.94094 0.97378 1.20982 0.95472 0.94273 0.86050 1.22764 0.98818 0.99416 1.02580 1.22551 0.96907 1.01280 1.02450 0.90618 0.91276 0.91970 0.89002 0.90468 0.91476 0.91263 0.90266 0.90622 0.90894 0.87525 0.88381 0.88214 0.90548 0.84606 0.88293 0.90413 0.92021 0.92187 0.92092 0.91549 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.99 37.16 0.33 -1.25 16 2 C 0.12 1.09 2.65 -67.93 -0.18 0.91 16 3 C -0.17 -1.04 7.33 37.15 0.27 -0.77 16 4 N -0.60 -6.75 2.42 -158.59 -0.38 -7.14 16 5 C 0.52 8.04 6.91 -10.99 -0.08 7.96 16 6 O -0.51 -9.79 15.99 -13.07 -0.21 -10.00 16 7 C 0.07 1.06 2.12 -27.88 -0.06 1.00 16 8 H 0.10 1.61 5.70 -51.93 -0.30 1.32 16 9 C -0.16 -2.08 9.35 37.16 0.35 -1.73 16 10 O -0.33 -6.69 8.74 -46.92 -0.41 -7.10 16 11 C 0.51 11.69 7.87 34.63 0.27 11.97 16 12 O -0.52 -12.25 15.59 -19.24 -0.30 -12.55 16 13 C -0.12 -2.92 5.87 -105.05 -0.62 -3.54 16 14 C -0.18 -4.20 9.62 -38.90 -0.37 -4.57 16 15 C -0.11 -2.40 10.01 -39.73 -0.40 -2.80 16 16 C -0.19 -4.60 9.78 -38.81 -0.38 -4.98 16 17 C 0.09 2.49 5.53 -106.87 -0.59 1.90 16 18 C -0.46 -12.10 9.06 -37.73 -0.34 -12.44 16 19 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 20 C 0.07 1.80 5.24 -17.35 -0.09 1.71 16 21 N -0.80 -21.01 10.92 55.55 0.61 -20.40 16 22 Si 0.91 18.72 29.57 -169.99 -5.03 13.69 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 26 C -0.08 -2.12 8.19 -38.43 -0.31 -2.43 16 27 C 0.13 1.30 3.14 -67.93 -0.21 1.09 16 28 C -0.18 -1.29 7.79 37.16 0.29 -1.00 16 29 C -0.17 -1.34 7.98 37.16 0.30 -1.04 16 30 H 0.08 0.57 4.70 -51.93 -0.24 0.33 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.84 4.87 -51.93 -0.25 0.59 16 34 H 0.08 0.47 5.62 -51.93 -0.29 0.17 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.36 5.05 -51.93 -0.26 0.10 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.11 2.31 7.59 -52.49 -0.40 1.91 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 43 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 44 H 0.14 3.83 5.88 -52.48 -0.31 3.52 16 45 H 0.10 1.19 6.93 -51.93 -0.36 0.83 16 46 H 0.08 0.44 4.46 -51.93 -0.23 0.21 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 51 H 0.08 0.50 3.11 -51.93 -0.16 0.34 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -31.07 398.37 -8.91 -39.97 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.36 Total: 7.55 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.82 Total: -10.02 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.22 Total: -27.54 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.92 Total: -29.65 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.07 -8.91 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525562.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.412 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds