Wall clock time and date at job start Wed Apr 1 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46853 * 2 1 4 4 O 1.45196 * 109.47404 * 239.99793 * 2 1 3 5 5 C 1.34703 * 117.00023 * 89.99883 * 4 2 1 6 6 O 1.21472 * 120.00139 * 0.02562 * 5 4 2 7 7 C 1.47731 * 119.99962 * 180.02562 * 5 4 2 8 8 C 1.39628 * 120.14587 * 180.02562 * 7 5 4 9 9 C 1.37952 * 119.84452 * 179.97438 * 8 7 5 10 10 C 1.38364 * 120.14850 * 0.27858 * 9 8 7 11 11 C 1.50703 * 119.84678 * 179.72098 * 10 9 8 12 12 C 1.52998 * 109.47186 * 59.99957 * 11 10 9 13 13 C 1.53006 * 109.47089 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47323 * 299.99896 * 11 10 9 15 15 C 1.38375 * 120.30491 * 359.44587 * 10 9 8 16 16 C 1.37948 * 120.14625 * 0.55113 * 15 10 9 17 17 C 1.50708 * 109.46719 * 119.99769 * 2 1 3 18 18 O 1.21277 * 119.99634 * 120.00420 * 17 2 1 19 19 N 1.34776 * 119.99902 * 299.99818 * 17 2 1 20 20 C 1.46506 * 120.00079 * 0.02562 * 19 17 2 21 21 C 1.46499 * 120.00065 * 179.97438 * 19 17 2 22 22 C 1.50706 * 109.46739 * 89.99991 * 21 19 17 23 23 H 1.08000 * 119.99839 * 0.02562 * 22 21 19 24 24 C 1.37882 * 119.99685 * 179.97438 * 22 21 19 25 25 N 1.31507 * 119.99821 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99485 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47352 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47071 * 120.00747 * 26 24 22 29 29 H 1.48509 * 109.46780 * 239.99827 * 26 24 22 30 30 H 1.08995 * 109.47506 * 300.00284 * 1 2 3 31 31 H 1.08999 * 109.46792 * 60.00014 * 1 2 3 32 32 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.08022 * 359.95492 * 8 7 5 34 34 H 1.08002 * 119.92227 * 179.97438 * 9 8 7 35 35 H 1.09009 * 109.46843 * 59.99848 * 12 11 10 36 36 H 1.08991 * 109.47199 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.46805 * 300.00225 * 12 11 10 38 38 H 1.09003 * 109.46721 * 59.99920 * 13 11 10 39 39 H 1.08996 * 109.46845 * 180.02562 * 13 11 10 40 40 H 1.08995 * 109.47024 * 300.00169 * 13 11 10 41 41 H 1.08999 * 109.46946 * 59.99604 * 14 11 10 42 42 H 1.08991 * 109.47103 * 180.02562 * 14 11 10 43 43 H 1.09003 * 109.47237 * 300.00539 * 14 11 10 44 44 H 1.07994 * 119.92633 * 180.25805 * 15 10 9 45 45 H 1.07996 * 120.07333 * 179.70727 * 16 15 10 46 46 H 1.08997 * 109.46821 * 89.99717 * 20 19 17 47 47 H 1.09003 * 109.46832 * 209.99366 * 20 19 17 48 48 H 1.08995 * 109.46857 * 329.99675 * 20 19 17 49 49 H 1.08988 * 109.47662 * 210.00251 * 21 19 17 50 50 H 1.09003 * 109.47105 * 330.00769 * 21 19 17 51 51 H 0.97003 * 119.99809 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2180 0.0666 -2.2849 6 8 1.9978 1.2608 -2.2541 7 6 2.7093 -0.5620 -3.5283 8 6 2.9221 0.2137 -4.6695 9 6 3.3815 -0.3797 -5.8271 10 6 3.6257 -1.7412 -5.8604 11 6 4.1215 -2.3834 -7.1304 12 6 5.4582 -1.7560 -7.5311 13 6 4.3112 -3.8845 -6.9025 14 6 3.0991 -2.1617 -8.2469 15 6 3.4223 -2.5149 -4.7314 16 6 2.9632 -1.9344 -3.5672 17 6 2.0323 -0.7104 1.2306 18 8 2.7296 -1.6964 1.1193 19 7 1.7067 -0.2499 2.4546 20 6 0.8640 0.9410 2.5890 21 6 2.1944 -0.9407 3.6509 22 6 3.5222 -0.3578 4.0613 23 1 3.9587 0.4471 3.4885 24 6 4.1791 -0.8513 5.1685 25 7 3.6472 -1.8310 5.8661 26 14 5.8245 -0.1282 5.6776 27 1 6.2020 0.9553 4.7349 28 1 5.7179 0.4261 7.0512 29 1 6.8614 -1.1911 5.6519 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.7273 1.2757 -4.6463 34 1 3.5462 0.2191 -6.7107 35 1 6.1866 -1.9140 -6.7356 36 1 5.8169 -2.2208 -8.4493 37 1 5.3235 -0.6866 -7.6932 38 1 3.3590 -4.3317 -6.6168 39 1 4.6701 -4.3488 -7.8210 40 1 5.0397 -4.0420 -6.1073 41 1 2.9643 -1.0923 -8.4090 42 1 3.4574 -2.6266 -9.1652 43 1 2.1467 -2.6086 -7.9614 44 1 3.6189 -3.5763 -4.7630 45 1 2.8004 -2.5402 -2.6881 46 1 -0.1838 0.6427 2.6224 47 1 1.1217 1.4666 3.5085 48 1 1.0273 1.5997 1.7360 49 1 1.4765 -0.8151 4.4612 50 1 2.3152 -2.0020 3.4336 51 1 4.1095 -2.1785 6.6449 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052413064.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:38 Heat of formation + Delta-G solvation = -100.435310 kcal Electronic energy + Delta-G solvation = -30318.891968 eV Core-core repulsion = 26183.397235 eV Total energy + Delta-G solvation = -4135.494733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83000 -39.93537 -38.87081 -36.71949 -36.15038 -34.95132 -32.93179 -31.76240 -31.37632 -30.45965 -27.74940 -27.67154 -27.64308 -26.26494 -25.09877 -24.03942 -22.74531 -22.30085 -21.04440 -19.54529 -18.90488 -18.31042 -17.04333 -16.54419 -16.33543 -15.99875 -15.74588 -15.41592 -15.17501 -14.87947 -14.67191 -14.58636 -14.22511 -13.98514 -13.71163 -13.63096 -13.41783 -13.09444 -12.94971 -12.78023 -12.44379 -12.36547 -12.31313 -12.17991 -12.09444 -12.05884 -11.74340 -11.62400 -11.37451 -11.33714 -11.16274 -11.13987 -10.90159 -10.84383 -10.69037 -10.59224 -10.52157 -10.17788 -9.64002 -9.21564 -9.04884 -8.90963 -8.46006 -7.73400 -6.06814 -4.11552 0.51982 1.15427 2.43032 2.50740 3.25996 3.29205 3.37051 3.42060 3.57754 3.87986 4.14793 4.32558 4.43074 4.59186 4.61297 4.74100 4.74998 4.85137 4.86775 5.00602 5.11207 5.13213 5.15022 5.22639 5.27976 5.31794 5.37429 5.46497 5.48608 5.49910 5.53336 5.61646 5.65761 5.67720 5.72377 5.77280 5.84028 5.85957 5.90269 5.99547 6.11139 6.14070 6.22143 6.30589 6.43754 6.62242 6.97613 7.38065 7.45938 7.74010 7.89578 8.19285 8.28392 8.84033 8.98905 9.53583 11.01350 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002188 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.482765 B =12795.074726 C =13761.655798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 H 0.106 0.894 4 O -0.320 6.320 5 C 0.508 3.492 6 O -0.511 6.511 7 C -0.127 4.127 8 C -0.052 4.052 9 C -0.132 4.132 10 C -0.038 4.038 11 C -0.035 4.035 12 C -0.140 4.140 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.053 4.053 17 C 0.509 3.491 18 O -0.520 6.520 19 N -0.596 5.596 20 C 0.076 3.924 21 C 0.246 3.754 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.136 0.864 45 H 0.143 0.857 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.046 0.954 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 1.372 -26.902 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.124 0.876 4 O -0.235 6.235 5 C 0.353 3.647 6 O -0.401 6.401 7 C -0.128 4.128 8 C -0.070 4.070 9 C -0.149 4.149 10 C -0.038 4.038 11 C -0.035 4.035 12 C -0.197 4.197 13 C -0.204 4.204 14 C -0.196 4.196 15 C -0.153 4.153 16 C -0.071 4.071 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.329 5.329 20 C -0.068 4.068 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.054 0.946 50 H 0.064 0.936 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.225 1.065 -26.721 27.074 hybrid contribution 0.859 0.645 0.558 1.210 sum -3.366 1.710 -26.163 26.434 Atomic orbital electron populations 1.22404 0.92412 1.04106 1.04313 1.22629 0.95689 0.97700 0.82734 0.87589 1.86640 1.76585 1.40946 1.19378 1.21264 0.74238 0.85080 0.84095 1.90797 1.48887 1.15915 1.84483 1.19114 1.07364 0.94619 0.91708 1.21232 0.94611 1.00279 0.90910 1.20889 1.01635 0.94418 0.97996 1.20137 0.95326 0.93578 0.94783 1.19602 0.95909 0.95612 0.92331 1.21905 0.95574 1.00720 1.01497 1.21997 1.02218 0.94069 1.02126 1.21895 0.98448 1.02044 0.97209 1.21226 1.01161 1.00794 0.92158 1.21639 0.93259 0.93572 0.98647 1.19760 0.81691 0.85392 0.83815 1.90700 1.36919 1.26021 1.85875 1.48056 1.49841 1.28373 1.06652 1.21890 0.93939 0.88053 1.02945 1.19357 0.94393 0.93749 0.79712 1.21466 1.04806 1.19153 1.11234 0.92366 1.24936 0.98002 0.94943 0.96226 1.69938 1.38957 1.26044 1.18347 0.86431 0.83661 0.79085 0.78191 1.19789 1.20919 1.20816 0.88836 0.91353 0.90987 0.84541 0.85253 0.92223 0.92126 0.92275 0.92009 0.92185 0.91928 0.92287 0.92135 0.92317 0.84646 0.83875 0.92999 0.90302 0.92264 0.94573 0.93634 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.19 37.16 0.34 -2.00 16 2 C 0.07 1.22 2.18 -27.88 -0.06 1.16 16 3 H 0.11 1.77 6.42 -51.93 -0.33 1.44 16 4 O -0.32 -5.62 8.67 -47.18 -0.41 -6.03 16 5 C 0.51 8.10 7.87 34.61 0.27 8.37 16 6 O -0.51 -8.72 15.61 -19.24 -0.30 -9.02 16 7 C -0.13 -1.68 5.87 -104.98 -0.62 -2.30 16 8 C -0.05 -0.58 9.60 -39.17 -0.38 -0.95 16 9 C -0.13 -1.18 8.69 -39.64 -0.34 -1.52 16 10 C -0.04 -0.33 4.77 -104.52 -0.50 -0.83 16 11 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 12 C -0.14 -0.85 8.28 37.16 0.31 -0.54 16 13 C -0.15 -0.88 7.13 37.16 0.26 -0.61 16 14 C -0.14 -0.78 8.29 37.16 0.31 -0.48 16 15 C -0.14 -1.32 8.96 -39.64 -0.36 -1.68 16 16 C -0.05 -0.64 9.62 -39.17 -0.38 -1.02 16 17 C 0.51 11.06 7.15 -10.98 -0.08 10.98 16 18 O -0.52 -13.59 16.08 -14.10 -0.23 -13.81 16 19 N -0.60 -12.71 2.86 -182.95 -0.52 -13.23 16 20 C 0.08 1.18 8.80 59.85 0.53 1.71 16 21 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 22 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 23 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 25 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 26 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.09 1.09 4.53 -51.93 -0.24 0.86 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 34 H 0.13 0.87 7.08 -52.49 -0.37 0.49 16 35 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.34 7.37 -51.93 -0.38 -0.04 16 38 H 0.06 0.36 7.52 -51.93 -0.39 -0.03 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.39 7.49 -51.93 -0.39 0.00 16 41 H 0.06 0.32 7.37 -51.93 -0.38 -0.07 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.14 1.08 5.87 -52.49 -0.31 0.77 16 45 H 0.14 1.79 7.61 -52.49 -0.40 1.40 16 46 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 47 H 0.08 1.25 8.07 -51.93 -0.42 0.84 16 48 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 49 H 0.04 0.94 8.07 -51.94 -0.42 0.52 16 50 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -34.64 413.17 -8.78 -43.42 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.00 Total: -1.38 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.27 Total: 2.63 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.21 Total: -39.03 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.94 Total: -28.86 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.64 -8.78 -43.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052413064.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.019 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds