Wall clock time and date at job start Wed Apr 1 2020 05:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47057 * 2 1 4 4 C 1.46506 * 119.99841 * 269.99831 * 3 2 1 5 5 C 1.50700 * 109.47029 * 269.99859 * 4 3 2 6 6 H 1.07997 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00056 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00121 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99609 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46812 * 90.00591 * 9 7 5 11 11 H 1.48506 * 109.47006 * 209.99882 * 9 7 5 12 12 H 1.48497 * 109.47554 * 330.00211 * 9 7 5 13 13 C 1.34770 * 120.00213 * 90.00276 * 3 2 1 14 14 O 1.21287 * 120.00370 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99820 * 359.97438 * 13 3 2 16 16 O 1.45209 * 109.46937 * 180.02562 * 15 13 3 17 17 C 1.34707 * 116.99638 * 180.02562 * 16 15 13 18 18 O 1.21477 * 120.00551 * 359.97438 * 17 16 15 19 19 C 1.47730 * 120.00059 * 180.02562 * 17 16 15 20 20 C 1.39636 * 120.14626 * 0.26936 * 19 17 16 21 21 C 1.37939 * 119.84570 * 180.23727 * 20 19 17 22 22 C 1.38369 * 120.15117 * 359.49074 * 21 20 19 23 23 C 1.50696 * 119.85085 * 180.27878 * 22 21 20 24 24 C 1.53007 * 109.47122 * 60.00255 * 23 22 21 25 25 C 1.53002 * 109.47367 * 180.02562 * 23 22 21 26 26 C 1.53001 * 109.47021 * 300.00264 * 23 22 21 27 27 C 1.38375 * 120.30352 * 0.26051 * 22 21 20 28 28 C 1.37944 * 120.14575 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47303 * 300.00457 * 1 2 3 30 30 H 1.09003 * 109.47070 * 60.00192 * 1 2 3 31 31 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47114 * 239.99756 * 2 1 3 33 33 H 1.08996 * 109.47182 * 120.00147 * 2 1 3 34 34 H 1.08992 * 109.47225 * 30.00524 * 4 3 2 35 35 H 1.09002 * 109.46926 * 150.00256 * 4 3 2 36 36 H 0.97002 * 120.00317 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47171 * 60.00571 * 15 13 3 38 38 H 1.08998 * 109.47331 * 299.99802 * 15 13 3 39 39 H 1.07998 * 120.07570 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.92729 * 179.77521 * 21 20 19 41 41 H 1.08993 * 109.47144 * 59.99731 * 24 23 22 42 42 H 1.08996 * 109.46938 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47046 * 299.99951 * 24 23 22 44 44 H 1.09001 * 109.46968 * 59.99773 * 25 23 22 45 45 H 1.09001 * 109.46967 * 180.02562 * 25 23 22 46 46 H 1.09001 * 109.46647 * 299.99922 * 25 23 22 47 47 H 1.09001 * 109.47258 * 59.99981 * 26 23 22 48 48 H 1.09010 * 109.46799 * 179.97438 * 26 23 22 49 49 H 1.09001 * 109.47076 * 299.99499 * 26 23 22 50 50 H 1.08000 * 119.92541 * 180.02562 * 27 22 21 51 51 H 1.08003 * 120.07163 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1495 2.3904 -2.8775 8 7 5.3914 2.1834 -3.2573 9 14 3.0135 3.4370 -3.9280 10 1 3.1175 4.8570 -3.5058 11 1 3.4066 3.3149 -5.3549 12 1 1.6137 2.9714 -3.7586 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1602 1.1672 15 6 1.9914 1.3063 2.4722 16 8 2.3055 2.1961 3.5759 17 6 2.1339 1.7107 4.8207 18 8 1.7324 0.5753 4.9799 19 6 2.4329 2.5594 5.9923 20 6 2.8882 3.8672 5.8129 21 6 3.1702 4.6526 6.9112 22 6 2.9928 4.1508 8.1885 23 6 3.2970 5.0170 9.3836 24 6 2.4116 6.2643 9.3480 25 6 3.0202 4.2310 10.6668 26 6 4.7684 5.4348 9.3493 27 6 2.5370 2.8575 8.3735 28 6 2.2558 2.0596 7.2839 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 5.7178 2.5745 -4.0829 37 1 2.6213 0.4186 2.5302 38 1 0.9433 1.0126 2.5299 39 1 3.0225 4.2617 4.8166 40 1 3.5259 5.6631 6.7740 41 1 1.3634 5.9667 9.3724 42 1 2.6319 6.8910 10.2122 43 1 2.6092 6.8242 8.4339 44 1 3.6512 3.3425 10.6919 45 1 3.2398 4.8577 11.5312 46 1 1.9720 3.9330 10.6913 47 1 4.9660 5.9946 8.4352 48 1 4.9883 6.0617 10.2136 49 1 5.3991 4.5461 9.3747 50 1 2.4003 2.4722 9.3731 51 1 1.8997 1.0504 7.4297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060799483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:38 Heat of formation + Delta-G solvation = -103.200603 kcal Electronic energy + Delta-G solvation = -29994.818542 eV Core-core repulsion = 25859.203897 eV Total energy + Delta-G solvation = -4135.614645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79702 -39.88523 -38.99306 -36.73819 -36.20703 -35.41509 -32.77460 -31.50472 -30.89171 -30.43583 -29.20132 -27.78340 -27.63526 -27.03165 -24.56582 -23.05787 -22.66600 -22.27955 -21.23968 -19.57289 -18.78765 -18.18317 -17.15028 -16.98190 -16.53365 -16.38063 -15.87848 -15.52000 -15.14959 -14.87132 -14.75271 -14.62440 -14.08842 -14.01366 -13.74236 -13.65221 -13.55655 -13.19835 -13.04709 -12.82732 -12.56030 -12.44394 -12.34085 -12.28874 -12.18936 -12.07554 -11.85145 -11.73859 -11.47559 -11.35706 -11.17197 -11.03358 -10.90558 -10.85928 -10.62202 -10.58621 -10.52199 -10.18624 -9.57304 -9.23784 -9.12481 -9.07293 -8.61006 -7.83489 -6.10581 -4.09916 0.48604 1.13219 2.39548 2.41152 3.15598 3.27908 3.33743 3.35702 3.54679 3.75442 4.12797 4.31216 4.37617 4.57347 4.61138 4.71560 4.75142 4.78941 4.84906 5.07189 5.11246 5.14020 5.16333 5.22582 5.23287 5.30161 5.31153 5.36183 5.46879 5.48562 5.49179 5.49753 5.61844 5.65480 5.70041 5.74743 5.83886 5.89947 5.92642 6.06598 6.09569 6.10806 6.28409 6.32912 6.35049 6.59936 6.64778 6.88565 7.23526 7.57039 7.67123 8.09937 8.43130 8.80458 8.93081 9.48869 11.02654 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002091 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.113577 B =13387.241565 C =14535.021086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.218 3.782 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.052 3.948 16 O -0.325 6.325 17 C 0.508 3.492 18 O -0.511 6.511 19 C -0.128 4.128 20 C -0.053 4.053 21 C -0.130 4.130 22 C -0.037 4.037 23 C -0.035 4.035 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.052 4.052 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.135 0.865 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 1.872 26.262 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.239 6.239 17 C 0.353 3.647 18 O -0.401 6.401 19 C -0.129 4.129 20 C -0.071 4.071 21 C -0.148 4.148 22 C -0.037 4.037 23 C -0.035 4.035 24 C -0.197 4.197 25 C -0.203 4.203 26 C -0.197 4.197 27 C -0.155 4.155 28 C -0.070 4.070 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.153 0.847 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.139 2.200 26.091 27.419 hybrid contribution -0.469 0.196 -0.833 0.976 sum -8.608 2.396 25.258 26.792 Atomic orbital electron populations 1.22246 0.96481 1.01898 1.02323 1.21547 0.93659 0.83554 1.03526 1.47867 1.64209 1.13560 1.06452 1.19702 0.97532 0.93431 0.79521 1.21313 0.95257 1.33098 1.07258 0.90683 1.24857 0.95024 0.95788 0.97335 1.69892 1.15113 1.44836 1.23565 0.86849 0.81418 0.81630 0.79774 1.19863 1.21039 1.19055 1.19706 0.79398 0.87114 0.84292 1.90712 1.44313 1.17565 1.86755 1.22941 1.02843 0.92676 0.84106 1.86596 1.78658 1.44601 1.14076 1.21265 0.74303 0.85632 0.83452 1.90815 1.43053 1.19384 1.86851 1.19099 1.08013 0.94895 0.90925 1.21637 0.92990 0.92084 1.00432 1.21011 1.01753 1.00543 0.91473 1.20148 0.95081 0.94042 0.94468 1.19606 0.96476 0.94813 0.92579 1.21904 0.99386 0.96136 1.02272 1.21987 1.01913 1.00175 0.96205 1.21911 0.93977 1.01579 1.02281 1.21116 1.01629 0.93754 0.99009 1.21256 0.95216 1.00101 0.90398 0.93020 0.91978 0.91665 0.89156 0.91351 0.94876 0.94416 0.92514 0.88369 0.88582 0.83759 0.85138 0.92342 0.92117 0.92109 0.92069 0.92171 0.92112 0.92087 0.92117 0.92286 0.84698 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.55 5.93 -4.04 -0.02 1.52 16 3 N -0.59 -11.96 2.46 -175.06 -0.43 -12.39 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.13 9.94 -34.44 -0.34 -15.48 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 13 C 0.51 10.58 7.75 -10.99 -0.09 10.50 16 14 O -0.52 -12.96 16.08 -14.11 -0.23 -13.19 16 15 C 0.05 0.84 4.51 36.01 0.16 1.00 16 16 O -0.32 -5.51 9.01 -47.19 -0.43 -5.93 16 17 C 0.51 7.73 7.90 34.61 0.27 8.01 16 18 O -0.51 -8.32 16.14 -19.25 -0.31 -8.63 16 19 C -0.13 -1.63 5.87 -104.98 -0.62 -2.25 16 20 C -0.05 -0.63 9.62 -39.17 -0.38 -1.00 16 21 C -0.13 -1.23 8.69 -39.64 -0.34 -1.58 16 22 C -0.04 -0.31 4.77 -104.53 -0.50 -0.81 16 23 C -0.03 -0.22 0.85 -155.66 -0.13 -0.35 16 24 C -0.14 -0.82 8.29 37.16 0.31 -0.51 16 25 C -0.15 -0.76 7.13 37.16 0.26 -0.50 16 26 C -0.14 -0.85 8.28 37.16 0.31 -0.54 16 27 C -0.14 -1.18 8.96 -39.64 -0.36 -1.54 16 28 C -0.05 -0.55 9.60 -39.17 -0.38 -0.92 16 29 H 0.05 0.62 7.22 -51.93 -0.37 0.24 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 34 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.47 7.40 -51.93 -0.38 1.08 16 38 H 0.10 1.34 7.18 -51.93 -0.37 0.96 16 39 H 0.14 1.80 7.61 -52.49 -0.40 1.40 16 40 H 0.13 1.02 7.08 -52.49 -0.37 0.65 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.36 7.37 -51.93 -0.38 -0.02 16 44 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.31 7.50 -51.93 -0.39 -0.08 16 47 H 0.06 0.38 7.37 -51.93 -0.38 0.00 16 48 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.14 0.86 5.87 -52.49 -0.31 0.55 16 51 H 0.14 1.36 7.65 -52.48 -0.40 0.95 16 LS Contribution 415.49 15.07 6.26 6.26 Total: -1.00 -34.97 415.49 -8.79 -43.75 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.19 Total: -0.91 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.57 Total: 1.04 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.34 Total: -39.13 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.96 Total: -27.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.97 -8.79 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060799483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.447 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds