Wall clock time and date at job start Wed Apr 1 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47057 * 2 1 4 4 C 1.46506 * 119.99841 * 269.99831 * 3 2 1 5 5 C 1.50700 * 109.47029 * 269.99859 * 4 3 2 6 6 H 1.07997 * 120.00102 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00056 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00121 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99609 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46812 * 90.00591 * 9 7 5 11 11 H 1.48506 * 109.47006 * 209.99882 * 9 7 5 12 12 H 1.48497 * 109.47554 * 330.00211 * 9 7 5 13 13 C 1.34770 * 120.00213 * 90.00276 * 3 2 1 14 14 O 1.21287 * 120.00370 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99820 * 359.97438 * 13 3 2 16 16 O 1.45209 * 109.46937 * 180.02562 * 15 13 3 17 17 C 1.34707 * 116.99638 * 180.02562 * 16 15 13 18 18 O 1.21477 * 120.00551 * 359.97438 * 17 16 15 19 19 C 1.47730 * 120.00059 * 180.02562 * 17 16 15 20 20 C 1.39636 * 120.14626 * 0.26936 * 19 17 16 21 21 C 1.37939 * 119.84570 * 180.23727 * 20 19 17 22 22 C 1.38369 * 120.15117 * 359.49074 * 21 20 19 23 23 C 1.50696 * 119.85085 * 180.27878 * 22 21 20 24 24 C 1.53007 * 109.47122 * 60.00255 * 23 22 21 25 25 C 1.53002 * 109.47367 * 180.02562 * 23 22 21 26 26 C 1.53001 * 109.47021 * 300.00264 * 23 22 21 27 27 C 1.38375 * 120.30352 * 0.26051 * 22 21 20 28 28 C 1.37944 * 120.14575 * 359.97438 * 27 22 21 29 29 H 1.08997 * 109.47303 * 300.00457 * 1 2 3 30 30 H 1.09003 * 109.47070 * 60.00192 * 1 2 3 31 31 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47114 * 239.99756 * 2 1 3 33 33 H 1.08996 * 109.47182 * 120.00147 * 2 1 3 34 34 H 1.08992 * 109.47225 * 30.00524 * 4 3 2 35 35 H 1.09002 * 109.46926 * 150.00256 * 4 3 2 36 36 H 0.97002 * 120.00317 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47171 * 60.00571 * 15 13 3 38 38 H 1.08998 * 109.47331 * 299.99802 * 15 13 3 39 39 H 1.07998 * 120.07570 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.92729 * 179.77521 * 21 20 19 41 41 H 1.08993 * 109.47144 * 59.99731 * 24 23 22 42 42 H 1.08996 * 109.46938 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47046 * 299.99951 * 24 23 22 44 44 H 1.09001 * 109.46968 * 59.99773 * 25 23 22 45 45 H 1.09001 * 109.46967 * 180.02562 * 25 23 22 46 46 H 1.09001 * 109.46647 * 299.99922 * 25 23 22 47 47 H 1.09001 * 109.47258 * 59.99981 * 26 23 22 48 48 H 1.09010 * 109.46799 * 179.97438 * 26 23 22 49 49 H 1.09001 * 109.47076 * 299.99499 * 26 23 22 50 50 H 1.08000 * 119.92541 * 180.02562 * 27 22 21 51 51 H 1.08003 * 120.07163 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1495 2.3904 -2.8775 8 7 5.3914 2.1834 -3.2573 9 14 3.0135 3.4370 -3.9280 10 1 3.1175 4.8570 -3.5058 11 1 3.4066 3.3149 -5.3549 12 1 1.6137 2.9714 -3.7586 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1602 1.1672 15 6 1.9914 1.3063 2.4722 16 8 2.3055 2.1961 3.5759 17 6 2.1339 1.7107 4.8207 18 8 1.7324 0.5753 4.9799 19 6 2.4329 2.5594 5.9923 20 6 2.8882 3.8672 5.8129 21 6 3.1702 4.6526 6.9112 22 6 2.9928 4.1508 8.1885 23 6 3.2970 5.0170 9.3836 24 6 2.4116 6.2643 9.3480 25 6 3.0202 4.2310 10.6668 26 6 4.7684 5.4348 9.3493 27 6 2.5370 2.8575 8.3735 28 6 2.2558 2.0596 7.2839 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 5.7178 2.5745 -4.0829 37 1 2.6213 0.4186 2.5302 38 1 0.9433 1.0126 2.5299 39 1 3.0225 4.2617 4.8166 40 1 3.5259 5.6631 6.7740 41 1 1.3634 5.9667 9.3724 42 1 2.6319 6.8910 10.2122 43 1 2.6092 6.8242 8.4339 44 1 3.6512 3.3425 10.6919 45 1 3.2398 4.8577 11.5312 46 1 1.9720 3.9330 10.6913 47 1 4.9660 5.9946 8.4352 48 1 4.9883 6.0617 10.2136 49 1 5.3991 4.5461 9.3747 50 1 2.4003 2.4722 9.3731 51 1 1.8997 1.0504 7.4297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060799483.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:37 Heat of formation + Delta-G solvation = -121.952848 kcal Electronic energy + Delta-G solvation = -29995.631701 eV Core-core repulsion = 25859.203897 eV Total energy + Delta-G solvation = -4136.427803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92802 -40.93047 -40.36376 -37.78122 -37.14269 -37.01109 -34.89622 -32.32180 -32.10109 -31.65995 -30.60508 -28.75663 -28.21127 -28.08793 -25.57229 -24.49534 -24.06877 -23.33278 -22.28953 -20.32150 -20.20112 -19.33914 -19.13410 -18.35004 -17.87479 -17.72120 -17.18960 -16.54227 -16.36395 -16.09665 -15.82933 -15.62667 -15.16001 -15.03360 -14.79846 -14.67148 -14.57165 -14.37513 -14.27147 -14.09314 -13.80679 -13.63020 -13.52479 -13.41665 -13.18770 -12.94207 -12.75630 -12.58814 -12.51078 -12.44880 -12.41970 -12.17447 -12.03582 -11.94917 -11.83749 -11.82489 -11.75591 -11.59027 -11.42052 -10.84871 -10.82128 -10.03481 -9.87225 -9.55578 -8.34964 -6.40727 -0.41916 0.34167 1.15273 1.33076 1.36329 1.36990 1.45222 1.54313 2.29522 2.30806 2.70122 2.99006 3.34940 3.44206 3.63443 3.70844 3.87719 3.92066 3.94741 4.07379 4.11480 4.11675 4.30662 4.34493 4.36594 4.44189 4.56554 4.73364 4.76430 4.81194 4.81631 4.83560 4.92706 4.93600 4.95291 4.97596 5.01029 5.05391 5.06752 5.14386 5.23479 5.27496 5.34418 5.34890 5.43309 5.44722 5.44974 5.54199 5.61014 5.83114 6.19949 6.43935 6.55169 6.60717 7.12636 7.26557 8.81863 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.002091 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.113577 B =13387.241565 C =14535.021086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.502 3.498 14 O -0.573 6.573 15 C 0.061 3.939 16 O -0.344 6.344 17 C 0.509 3.491 18 O -0.526 6.526 19 C -0.152 4.152 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.030 4.030 23 C -0.034 4.034 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.131 4.131 28 C -0.053 4.053 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.053 0.947 50 H 0.163 0.837 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 1.794 28.261 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.016 4.016 16 O -0.260 6.260 17 C 0.356 3.644 18 O -0.417 6.417 19 C -0.153 4.153 20 C -0.085 4.085 21 C -0.149 4.149 22 C -0.030 4.030 23 C -0.034 4.034 24 C -0.197 4.197 25 C -0.203 4.203 26 C -0.198 4.198 27 C -0.148 4.148 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.180 0.820 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.349 2.064 28.108 30.024 hybrid contribution 0.310 0.199 -1.323 1.374 sum -10.039 2.263 26.785 28.693 Atomic orbital electron populations 1.22180 0.93624 1.03964 1.02275 1.21903 0.95939 0.80729 1.04430 1.47963 1.63825 1.15346 1.05246 1.19389 0.95121 0.93170 0.81861 1.21535 0.96997 1.32313 1.06848 0.95291 1.25867 0.96774 0.97183 0.98950 1.70047 1.17426 1.46421 1.24495 0.85709 0.80510 0.78962 0.77739 1.20199 1.19982 1.15877 1.20469 0.78125 0.86678 0.85782 1.90675 1.46797 1.20061 1.87708 1.22856 1.04896 0.91956 0.81854 1.86603 1.79146 1.45296 1.14918 1.21691 0.73708 0.85805 0.83215 1.90786 1.44081 1.19947 1.86853 1.19142 1.10258 0.95153 0.90792 1.21571 0.94111 0.92323 1.00487 1.21187 1.01330 1.00963 0.91377 1.20488 0.93360 0.94294 0.94835 1.19673 0.96757 0.94806 0.92120 1.21914 0.99071 0.95980 1.02755 1.22006 1.02267 1.00323 0.95747 1.21925 0.93581 1.01571 1.02748 1.21435 1.00310 0.93449 0.99624 1.21406 0.95067 1.00655 0.89936 0.92336 0.92775 0.88486 0.89891 0.88953 0.92542 0.96062 0.92222 0.86861 0.85556 0.85485 0.83734 0.92586 0.90756 0.92507 0.91815 0.91030 0.91670 0.92543 0.90724 0.92768 0.81952 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 2 C 0.09 2.68 5.93 86.38 0.51 3.19 16 3 N -0.59 -24.14 2.46 -826.15 -2.03 -26.17 16 4 C 0.23 10.99 4.23 85.63 0.36 11.35 16 5 C -0.54 -31.77 9.94 25.60 0.25 -31.52 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.62 5.47 84.66 0.46 1.08 16 8 N -0.94 -59.90 13.96 21.45 0.30 -59.60 16 9 Si 0.95 44.34 27.47 68.60 1.88 46.22 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.24 -9.80 6.54 99.48 0.65 -9.14 16 13 C 0.50 21.25 7.75 87.66 0.68 21.93 16 14 O -0.57 -29.96 16.08 15.75 0.25 -29.70 16 15 C 0.06 1.97 4.51 71.24 0.32 2.29 16 16 O -0.34 -11.97 9.01 -49.78 -0.45 -12.42 16 17 C 0.51 15.65 7.90 70.33 0.56 16.21 16 18 O -0.53 -16.85 16.14 19.91 0.32 -16.53 16 19 C -0.15 -3.92 5.87 -20.10 -0.12 -4.04 16 20 C -0.07 -1.62 9.62 22.54 0.22 -1.40 16 21 C -0.13 -2.42 8.69 22.23 0.19 -2.23 16 22 C -0.03 -0.45 4.77 -19.80 -0.09 -0.55 16 23 C -0.03 -0.35 0.85 -52.93 -0.05 -0.39 16 24 C -0.14 -1.33 8.29 71.98 0.60 -0.74 16 25 C -0.15 -1.08 7.13 71.98 0.51 -0.57 16 26 C -0.14 -1.43 8.28 71.98 0.60 -0.83 16 27 C -0.13 -1.99 8.96 22.23 0.20 -1.79 16 28 C -0.05 -1.06 9.60 22.53 0.22 -0.84 16 29 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 2.55 8.07 -2.38 -0.02 2.53 16 33 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 34 H 0.06 2.48 7.13 -2.39 -0.02 2.46 16 35 H 0.02 1.11 6.85 -2.39 -0.02 1.09 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.11 3.30 7.40 -2.39 -0.02 3.28 16 38 H 0.13 3.29 7.18 -2.39 -0.02 3.27 16 39 H 0.13 3.45 7.61 -2.91 -0.02 3.43 16 40 H 0.14 2.18 7.08 -2.91 -0.02 2.16 16 41 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.59 7.37 -2.39 -0.02 0.57 16 44 H 0.06 0.46 7.51 -2.39 -0.02 0.44 16 45 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.06 0.44 7.50 -2.39 -0.02 0.42 16 47 H 0.06 0.62 7.37 -2.39 -0.02 0.60 16 48 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.16 1.55 5.87 -2.91 -0.02 1.54 16 51 H 0.14 2.66 7.65 -2.91 -0.02 2.64 16 Total: -1.00 -80.06 415.49 7.30 -72.76 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.86 Total: 17.14 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.16 Total: 8.31 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.73 Total: -85.77 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: 0.13 Total: -58.65 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Total: -80.06 7.30 -72.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060799483.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.197 kcal (2) G-P(sol) polarization free energy of solvation -80.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds