Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.50711 * 2 1 4 4 C 1.53096 * 109.50991 * 239.90848 * 2 1 3 5 5 N 1.47012 * 109.26301 * 183.21442 * 4 2 1 6 6 C 1.46901 * 111.00331 * 182.39618 * 5 4 2 7 7 C 1.50700 * 109.47286 * 169.99978 * 6 5 4 8 8 C 1.38364 * 119.84463 * 89.99767 * 7 6 5 9 9 C 1.37946 * 120.14811 * 180.02562 * 8 7 6 10 10 C 1.39629 * 119.84842 * 359.97438 * 9 8 7 11 11 C 1.47723 * 120.15075 * 179.97438 * 10 9 8 12 12 O 1.21470 * 120.00204 * 359.97438 * 11 10 9 13 13 O 1.34711 * 120.00106 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00172 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47145 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.39633 * 119.69956 * 0.25032 * 10 9 8 25 25 C 1.37946 * 119.84451 * 359.49440 * 24 10 9 26 26 C 1.47014 * 110.74990 * 58.61767 * 5 4 2 27 27 C 1.53093 * 109.25860 * 301.38398 * 26 5 4 28 28 H 1.08997 * 109.54620 * 176.80711 * 27 26 5 29 29 C 1.53001 * 109.50932 * 296.91549 * 27 26 5 30 30 O 1.43016 * 109.25960 * 56.85135 * 27 26 5 31 31 H 1.09004 * 109.46778 * 180.09380 * 1 2 3 32 32 H 1.08998 * 109.47170 * 300.08544 * 1 2 3 33 33 H 1.08997 * 109.47199 * 60.09227 * 1 2 3 34 34 H 1.09006 * 109.50456 * 63.28205 * 4 2 1 35 35 H 1.08996 * 109.50695 * 303.15268 * 4 2 1 36 36 H 1.08998 * 109.46937 * 49.99437 * 6 5 4 37 37 H 1.09003 * 109.46585 * 290.00019 * 6 5 4 38 38 H 1.08000 * 119.92704 * 0.02562 * 8 7 6 39 39 H 1.08002 * 120.08000 * 179.97438 * 9 8 7 40 40 H 1.09000 * 109.47580 * 59.99625 * 14 13 11 41 41 H 1.09002 * 109.46732 * 299.99204 * 14 13 11 42 42 H 1.09001 * 109.47671 * 59.99807 * 15 14 13 43 43 H 1.08998 * 109.47454 * 299.99804 * 15 14 13 44 44 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 45 45 H 1.07997 * 120.07701 * 179.74638 * 24 10 9 46 46 H 1.08000 * 119.92172 * 180.27544 * 25 24 10 47 47 H 1.09002 * 109.50500 * 61.32098 * 26 5 4 48 48 H 1.09005 * 109.50635 * 181.45102 * 26 5 4 49 49 H 1.09001 * 109.47571 * 179.78241 * 29 27 26 50 50 H 1.09000 * 109.47075 * 299.78222 * 29 27 26 51 51 H 1.08999 * 109.47226 * 59.78032 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5093 -0.7880 -1.2047 6 6 4.0447 -1.4260 -2.4148 7 6 5.5417 -1.2564 -2.4518 8 6 6.3573 -2.2091 -1.8673 9 6 7.7283 -2.0599 -1.8970 10 6 8.2926 -0.9445 -2.5192 11 6 9.7600 -0.7777 -2.5545 12 8 10.4786 -1.6116 -2.0410 13 8 10.3012 0.2998 -3.1552 14 6 11.7498 0.3980 -3.1522 15 6 12.1757 1.6774 -3.8751 16 6 13.6793 1.7797 -3.8715 17 1 14.2717 1.0094 -3.4003 18 6 14.2987 2.8540 -4.4742 19 7 13.5773 3.7892 -5.0527 20 14 16.1624 2.9804 -4.4703 21 1 16.7067 2.3072 -5.6768 22 1 16.5614 4.4107 -4.4790 23 1 16.7004 2.3238 -3.2519 24 6 7.4634 0.0154 -3.1030 25 6 6.0942 -0.1490 -3.0706 26 6 3.9640 -1.4884 0.0053 27 6 3.4335 -0.7572 1.2413 28 1 3.7202 -1.3041 2.1395 29 6 4.0229 0.6538 1.2925 30 8 2.0076 -0.6767 1.1660 31 1 -0.3633 -1.0277 0.0017 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5124 -0.8908 34 1 1.7274 -0.1788 -2.1390 35 1 1.6332 -1.7338 -1.2765 36 1 3.6043 -0.9601 -3.2963 37 1 3.7995 -2.4881 -2.4043 38 1 5.9195 -3.0715 -1.3867 39 1 8.3639 -2.8040 -1.4400 40 1 12.1737 -0.4662 -3.6636 41 1 12.1100 0.4244 -2.1237 42 1 11.7519 2.5419 -3.3641 43 1 11.8155 1.6508 -4.9035 44 1 14.0131 4.5448 -5.4771 45 1 7.8932 0.8825 -3.5823 46 1 5.4519 0.5904 -3.5256 47 1 3.5867 -2.5110 -0.0026 48 1 5.0537 -1.5020 0.0302 49 1 3.6419 1.1752 2.1706 50 1 5.1097 0.5917 1.3500 51 1 3.7373 1.1997 0.3934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061394747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = -113.383923 kcal Electronic energy + Delta-G solvation = -29849.849517 eV Core-core repulsion = 25713.793290 eV Total energy + Delta-G solvation = -4136.056227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.65355 -40.10714 -38.88518 -36.34034 -35.94545 -33.79768 -33.36431 -32.26380 -31.21357 -30.51405 -30.12050 -27.44142 -27.27703 -25.20581 -24.04429 -23.30264 -22.73216 -22.09505 -20.98084 -20.37230 -19.82520 -17.83703 -16.96155 -16.80532 -16.73764 -16.14240 -16.06842 -15.90513 -15.65453 -15.10402 -14.96755 -14.74179 -14.63025 -14.39173 -14.15505 -13.64611 -13.44802 -13.36159 -12.94758 -12.84255 -12.63423 -12.51618 -12.47056 -12.35971 -12.19897 -12.03817 -11.92863 -11.55468 -11.35966 -11.24373 -11.19186 -11.02046 -10.76459 -10.70701 -10.68176 -10.28205 -9.94902 -9.66206 -9.63691 -9.30950 -9.13497 -9.08235 -8.74465 -8.44893 -6.11062 -4.15386 0.61778 1.22881 2.66398 3.13256 3.28316 3.29983 3.34523 3.39161 3.40795 3.81256 4.24776 4.38247 4.40576 4.43289 4.54311 4.65921 4.69948 4.76216 4.80284 4.89878 4.98080 5.00454 5.07976 5.12799 5.13676 5.18248 5.25609 5.26699 5.31141 5.34688 5.45601 5.54194 5.59971 5.66784 5.68486 5.73232 5.84504 6.01892 6.04370 6.08684 6.15072 6.25594 6.31126 6.47409 6.51281 6.62690 6.70227 6.85406 6.94370 7.54799 7.61382 7.85856 8.16625 8.24893 8.90033 9.49039 11.00419 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.001713 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.941073 B =16341.949527 C =16680.414217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.071 0.929 4 C 0.024 3.976 5 N -0.527 5.527 6 C 0.092 3.908 7 C -0.053 4.053 8 C -0.130 4.130 9 C -0.058 4.058 10 C -0.115 4.115 11 C 0.499 3.501 12 O -0.516 6.516 13 O -0.352 6.352 14 C 0.076 3.924 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.059 4.059 25 C -0.111 4.111 26 C 0.019 3.981 27 C 0.091 3.909 28 H 0.105 0.895 29 C -0.176 4.176 30 O -0.379 6.379 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.042 0.958 48 H 0.093 0.907 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.810 -10.159 8.652 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.089 0.911 4 C -0.104 4.104 5 N -0.252 5.252 6 C -0.035 4.035 7 C -0.054 4.054 8 C -0.148 4.148 9 C -0.076 4.076 10 C -0.117 4.117 11 C 0.344 3.656 12 O -0.407 6.407 13 O -0.268 6.268 14 C 0.003 3.997 15 C -0.013 4.013 16 C -0.565 4.565 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.077 4.077 25 C -0.129 4.129 26 C -0.109 4.109 27 C 0.033 3.967 28 H 0.122 0.878 29 C -0.233 4.233 30 O -0.298 6.298 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.073 0.927 45 H 0.161 0.839 46 H 0.149 0.851 47 H 0.060 0.940 48 H 0.111 0.889 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.494 -9.793 8.844 31.401 hybrid contribution 1.162 -0.693 -0.284 1.382 sum -27.332 -10.486 8.560 30.500 Atomic orbital electron populations 1.21750 0.92854 1.02885 1.02741 1.22150 0.94626 0.96182 0.84259 0.91090 1.22843 0.87519 1.00321 0.99693 1.62186 1.08551 1.52730 1.01720 1.21105 0.91223 0.97822 0.93373 1.19886 0.94670 0.94460 0.96392 1.20932 0.92911 0.99660 1.01340 1.21226 0.94864 0.95960 0.95588 1.19323 0.90196 0.97862 1.04281 1.21155 0.89011 0.79938 0.75512 1.90787 1.63047 1.43060 1.43760 1.86567 1.28244 1.42286 1.69676 1.23675 0.72251 1.02201 1.01539 1.19176 0.96156 0.89860 0.96068 1.20980 0.90648 1.07749 1.37121 0.92239 1.24979 0.98735 0.95447 0.94978 1.69972 1.35487 1.11059 1.36293 0.86466 0.84925 0.77308 0.78589 1.20482 1.21040 1.19717 1.21616 0.93169 0.97915 0.95039 1.20992 0.94587 0.97333 1.00021 1.22918 1.02030 0.95692 0.90298 1.22256 0.80530 0.96701 0.97214 0.87773 1.22281 1.01593 0.96723 1.02735 1.88040 1.20924 1.78053 1.42776 0.91971 0.91514 0.90914 0.89545 0.93921 0.89326 0.93515 0.85679 0.84589 0.92227 0.92211 0.95309 0.95303 0.92710 0.83886 0.85135 0.94001 0.88863 0.92397 0.91487 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.57 37.16 0.36 -0.40 16 2 C 0.09 0.60 3.02 -26.68 -0.08 0.52 16 3 H 0.07 0.52 6.50 -51.93 -0.34 0.19 16 4 C 0.02 0.16 4.93 -3.71 -0.02 0.14 16 5 N -0.53 -3.93 4.08 -235.75 -0.96 -4.89 16 6 C 0.09 0.64 5.11 -4.98 -0.03 0.62 16 7 C -0.05 -0.48 4.91 -104.53 -0.51 -0.99 16 8 C -0.13 -1.22 7.91 -39.64 -0.31 -1.54 16 9 C -0.06 -0.70 9.60 -39.17 -0.38 -1.08 16 10 C -0.12 -1.66 5.87 -104.98 -0.62 -2.28 16 11 C 0.50 9.19 7.90 34.61 0.27 9.46 16 12 O -0.52 -10.57 16.14 -19.24 -0.31 -10.88 16 13 O -0.35 -7.15 9.47 -40.52 -0.38 -7.54 16 14 C 0.08 1.71 5.41 37.16 0.20 1.91 16 15 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 16 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 20 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.06 -0.74 9.62 -39.17 -0.38 -1.12 16 25 C -0.11 -1.11 9.68 -39.64 -0.38 -1.49 16 26 C 0.02 0.14 4.68 -3.71 -0.02 0.12 16 27 C 0.09 0.71 3.92 -26.68 -0.10 0.61 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 C -0.18 -1.40 8.88 37.16 0.33 -1.07 16 30 O -0.38 -3.37 10.28 -35.23 -0.36 -3.73 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.53 7.98 -51.93 -0.41 0.12 16 37 H 0.05 0.30 8.06 -51.93 -0.42 -0.11 16 38 H 0.13 0.91 8.00 -52.49 -0.42 0.49 16 39 H 0.14 1.61 7.65 -52.49 -0.40 1.21 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 47 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.09 0.75 6.01 -51.93 -0.31 0.44 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.63 6.13 -51.93 -0.32 0.31 16 LS Contribution 412.87 15.07 6.22 6.22 Total: -1.00 -31.87 412.87 -10.79 -42.66 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -8.48 Total: -3.03 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.23 Total: -9.65 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: -0.23 Total: -30.47 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.06 Total: -22.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.87 -10.79 -42.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061394747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.724 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds