Wall clock time and date at job start Wed Apr 1 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47127 * 2 1 4 4 C 1.42902 * 113.99844 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47154 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.50119 * 304.93477 * 5 4 3 7 7 C 1.53046 * 109.50023 * 184.83912 * 5 4 3 8 8 C 1.53038 * 109.54060 * 178.68444 * 7 5 4 9 9 C 1.53186 * 109.31190 * 61.36220 * 8 7 5 10 10 N 1.46920 * 108.77897 * 305.36681 * 9 8 7 11 11 C 1.34781 * 120.63460 * 233.58226 * 10 9 8 12 12 O 1.21277 * 120.00669 * 180.02562 * 11 10 9 13 13 C 1.50704 * 119.99504 * 0.02684 * 11 10 9 14 14 C 1.50698 * 109.47019 * 179.97438 * 13 11 10 15 15 C 1.38303 * 119.93334 * 269.72781 * 14 13 11 16 16 C 1.38102 * 120.06780 * 179.72570 * 15 14 13 17 17 C 1.38875 * 119.93193 * 0.54738 * 16 15 14 18 18 O 1.35748 * 120.07237 * 179.74951 * 17 16 15 19 19 C 1.34823 * 117.00376 * 174.44116 * 18 17 16 20 20 H 1.07996 * 119.99979 * 5.05223 * 19 18 17 21 21 C 1.38653 * 119.99967 * 185.05694 * 19 18 17 22 22 N 1.31556 * 120.00429 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99848 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47197 * 119.99911 * 23 21 19 26 26 H 1.48504 * 109.47289 * 240.00010 * 23 21 19 27 27 C 1.38884 * 119.86233 * 359.72534 * 17 16 15 28 28 C 1.38099 * 119.92983 * 0.02562 * 27 17 16 29 29 C 1.46928 * 118.74102 * 53.60914 * 10 9 8 30 30 H 1.09005 * 109.46686 * 59.99667 * 1 2 3 31 31 H 1.08999 * 109.47003 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.46782 * 300.00060 * 1 2 3 33 33 H 1.09003 * 109.46588 * 239.99750 * 2 1 3 34 34 H 1.08996 * 109.46839 * 120.00604 * 2 1 3 35 35 H 1.09000 * 109.47188 * 300.00136 * 4 3 2 36 36 H 1.09004 * 109.46756 * 60.00331 * 4 3 2 37 37 H 1.09000 * 109.45844 * 298.70488 * 7 5 4 38 38 H 1.08999 * 109.45496 * 58.66475 * 7 5 4 39 39 H 1.09009 * 109.49610 * 301.41645 * 8 7 5 40 40 H 1.08998 * 109.49732 * 181.32051 * 8 7 5 41 41 H 1.09006 * 109.58958 * 185.57382 * 9 8 7 42 42 H 1.09009 * 109.58726 * 65.15729 * 9 8 7 43 43 H 1.09000 * 109.46989 * 299.99704 * 13 11 10 44 44 H 1.08994 * 109.47130 * 59.99636 * 13 11 10 45 45 H 1.08002 * 119.96123 * 359.97438 * 15 14 13 46 46 H 1.07999 * 120.03305 * 180.26775 * 16 15 14 47 47 H 0.96996 * 120.00160 * 180.02562 * 22 21 19 48 48 H 1.07998 * 120.03314 * 180.02562 * 27 17 16 49 49 H 1.07996 * 119.96699 * 180.02562 * 28 27 17 50 50 H 1.09000 * 109.58862 * 186.60445 * 29 10 9 51 51 H 1.09001 * 109.58449 * 66.17695 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8255 2.9382 0.0012 6 1 3.3512 3.4418 -0.8412 7 6 5.3462 3.0612 -0.1199 8 6 5.7392 4.5398 -0.1524 9 6 5.3026 5.2089 1.1546 10 7 3.8663 4.9706 1.3511 11 6 3.0224 5.9993 1.5656 12 8 1.8388 5.7895 1.7269 13 6 3.5496 7.4106 1.6050 14 6 2.4111 8.3653 1.8571 15 6 1.7153 8.9063 0.7914 16 6 0.6678 9.7770 1.0194 17 6 0.3208 10.1180 2.3202 18 8 -0.7050 10.9776 2.5474 19 6 -1.0639 11.1766 3.8317 20 1 -0.4904 10.7266 4.6285 21 6 -2.1693 11.9588 4.1293 22 7 -2.8683 12.5064 3.1587 23 14 -2.6670 12.2338 5.9087 24 1 -1.7249 11.5142 6.8032 25 1 -2.6275 13.6864 6.2149 26 1 -4.0437 11.7200 6.1228 27 6 1.0252 9.5774 3.3881 28 6 2.0683 8.7033 3.1537 29 6 3.3672 3.5892 1.3100 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8334 0.9766 0.8908 36 1 3.8340 0.9764 -0.8892 37 1 5.8188 2.5785 0.7356 38 1 5.6776 2.5771 -1.0386 39 1 5.2472 5.0287 -0.9934 40 1 6.8202 4.6266 -0.2622 41 1 5.4906 6.2811 1.0968 42 1 5.8612 4.7824 1.9879 43 1 4.2845 7.5017 2.4048 44 1 4.0193 7.6497 0.6510 45 1 1.9888 8.6445 -0.2201 46 1 0.1221 10.1959 0.1869 47 1 -3.6414 13.0539 3.3670 48 1 0.7574 9.8404 4.4008 49 1 2.6161 8.2822 3.9837 50 1 2.2781 3.5926 1.3546 51 1 3.7680 3.0306 2.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070920325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:26 Heat of formation + Delta-G solvation = -118.930470 kcal Electronic energy + Delta-G solvation = -30026.828027 eV Core-core repulsion = 25890.531284 eV Total energy + Delta-G solvation = -4136.296743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.39204 -40.64024 -39.40904 -38.41106 -37.84683 -34.65298 -34.35522 -32.85397 -32.72434 -31.78950 -31.49555 -28.59946 -27.31833 -26.60405 -25.83906 -23.72287 -23.64438 -23.06433 -22.52880 -21.25972 -19.93636 -19.80599 -18.83045 -18.12454 -17.58484 -17.36125 -16.78369 -16.64411 -16.30645 -16.11878 -15.83500 -15.59627 -15.50843 -15.38185 -15.02703 -14.97377 -14.47102 -14.28423 -14.20320 -14.13591 -13.92578 -13.78062 -13.59084 -13.26277 -12.99218 -12.97888 -12.78666 -12.52666 -12.42078 -12.27745 -12.23930 -12.11248 -12.08596 -11.91624 -11.81673 -11.57269 -11.45143 -11.18361 -10.87054 -10.68565 -10.54846 -9.77198 -9.57842 -8.90231 -8.47866 -6.15986 0.60636 0.66488 1.33162 1.42097 1.52250 1.71578 2.08262 2.17183 2.72263 2.82764 3.14927 3.51644 3.70514 3.80146 3.82006 3.92957 4.04035 4.10072 4.12750 4.14708 4.18144 4.23780 4.31169 4.43677 4.45585 4.48244 4.52166 4.58143 4.61053 4.64520 4.68654 4.75088 4.79148 4.83144 4.92317 4.94473 4.98983 5.06630 5.11612 5.14381 5.17521 5.23368 5.25505 5.30197 5.47233 5.55000 5.64224 5.70862 5.77275 6.02524 6.21545 6.31191 6.48680 6.96644 7.29740 7.78084 8.75936 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.002085 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.398116 B =13423.672982 C =14763.852587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.054 3.946 3 O -0.420 6.420 4 C 0.067 3.933 5 C -0.094 4.094 6 H 0.058 0.942 7 C -0.107 4.107 8 C -0.132 4.132 9 C 0.095 3.905 10 N -0.614 5.614 11 C 0.507 3.493 12 O -0.585 6.585 13 C -0.074 4.074 14 C -0.145 4.145 15 C -0.059 4.059 16 C -0.206 4.206 17 C 0.112 3.888 18 O -0.233 6.233 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.264 1.264 26 H -0.269 1.269 27 C -0.243 4.243 28 C -0.061 4.061 29 C 0.120 3.880 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.144 0.856 46 H 0.112 0.888 47 H 0.273 0.727 48 H 0.118 0.882 49 H 0.138 0.862 50 H 0.054 0.946 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.102 -25.382 -6.026 35.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 O -0.341 6.341 4 C -0.009 4.009 5 C -0.114 4.114 6 H 0.077 0.923 7 C -0.145 4.145 8 C -0.170 4.170 9 C -0.026 4.026 10 N -0.347 5.347 11 C 0.297 3.703 12 O -0.464 6.464 13 C -0.114 4.114 14 C -0.146 4.146 15 C -0.077 4.077 16 C -0.225 4.225 17 C 0.062 3.938 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.176 1.176 25 H -0.189 1.189 26 H -0.194 1.194 27 C -0.262 4.262 28 C -0.079 4.079 29 C -0.003 4.003 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.162 0.838 46 H 0.130 0.870 47 H 0.082 0.918 48 H 0.136 0.864 49 H 0.156 0.844 50 H 0.073 0.927 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 23.066 -25.078 -6.119 34.618 hybrid contribution -1.096 0.211 0.594 1.264 sum 21.971 -24.867 -5.525 33.639 Atomic orbital electron populations 1.21795 0.94060 1.03220 1.02131 1.22598 0.95588 0.82956 1.01091 1.87940 1.22494 1.28009 1.95615 1.22614 0.80609 0.96075 1.01634 1.21477 0.98166 0.94469 0.97243 0.92318 1.21511 0.91690 0.97485 1.03800 1.21923 1.03041 0.95071 0.96917 1.22153 0.78228 1.03293 0.98907 1.48281 1.09430 1.05843 1.71180 1.21297 0.85710 0.88148 0.75195 1.90743 1.18849 1.85935 1.50899 1.20560 0.96408 0.87539 1.06843 1.19270 1.01005 1.01743 0.92573 1.20856 0.93078 0.94135 0.99588 1.20430 1.02933 1.05499 0.93653 1.19920 0.88766 0.89940 0.95188 1.83934 1.45073 1.55104 1.29908 1.21860 1.13093 1.32858 0.81148 0.88290 1.26632 0.94691 0.95518 1.05395 1.70194 1.18572 1.32587 1.34657 0.84509 0.78660 0.78888 0.73973 1.17572 1.18915 1.19409 1.21225 1.01257 1.05198 0.98543 1.20924 0.94982 0.94719 0.97229 1.21482 0.99480 0.81598 0.97710 0.92859 0.88889 0.93285 0.92005 0.92305 0.91783 0.91373 0.89975 0.89992 0.92245 0.87504 0.87578 0.89353 0.85310 0.85316 0.83808 0.86986 0.91822 0.86435 0.84443 0.92707 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.80 6.66 71.98 0.48 1.28 16 3 O -0.42 -8.83 9.99 -148.98 -1.49 -10.32 16 4 C 0.07 0.94 5.32 71.98 0.38 1.32 16 5 C -0.09 -1.44 2.58 -10.72 -0.03 -1.47 16 6 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 7 C -0.11 -0.83 5.17 30.62 0.16 -0.67 16 8 C -0.13 -0.90 6.08 30.67 0.19 -0.72 16 9 C 0.10 0.90 6.34 86.36 0.55 1.44 16 10 N -0.61 -12.14 2.97 -818.90 -2.43 -14.57 16 11 C 0.51 14.15 7.69 87.66 0.67 14.82 16 12 O -0.58 -23.81 15.45 -3.02 -0.05 -23.86 16 13 C -0.07 -1.65 4.18 29.10 0.12 -1.53 16 14 C -0.14 -4.93 4.38 -19.83 -0.09 -5.02 16 15 C -0.06 -2.20 9.69 22.25 0.22 -1.98 16 16 C -0.21 -9.68 9.99 22.39 0.22 -9.46 16 17 C 0.11 6.07 6.65 22.58 0.15 6.22 16 18 O -0.23 -14.96 9.76 -22.65 -0.22 -15.18 16 19 C -0.41 -25.47 9.49 67.92 0.64 -24.83 16 20 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 21 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 22 N -0.92 -58.89 13.67 21.61 0.30 -58.59 16 23 Si 1.02 44.96 29.55 68.60 2.03 46.98 16 24 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 27 C -0.24 -11.61 9.17 22.39 0.21 -11.40 16 28 C -0.06 -2.31 9.69 22.25 0.22 -2.10 16 29 C 0.12 2.51 5.55 86.36 0.48 2.99 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.11 0.66 5.93 -2.38 -0.01 0.65 16 42 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.13 1.99 7.88 -2.39 -0.02 1.97 16 44 H 0.13 1.99 7.63 -2.39 -0.02 1.97 16 45 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 46 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 47 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 48 H 0.12 5.67 5.64 -2.91 -0.02 5.66 16 49 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 50 H 0.05 1.67 6.85 -2.39 -0.02 1.65 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -88.42 412.72 4.82 -83.60 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.91 Total: 25.73 kcal Atomic # 6 Polarization: -39.57 SS G_CDS: 5.78 Total: -33.79 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.14 Total: -73.17 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.76 Total: -49.36 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -88.42 4.82 -83.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070920325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.332 kcal (2) G-P(sol) polarization free energy of solvation -88.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds