Wall clock time and date at job start Wed Apr 1 2020 05:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42904 * 109.47020 * 2 1 4 4 C 1.42904 * 113.99515 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46714 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.49991 * 54.99789 * 5 4 3 7 7 C 1.53038 * 109.52375 * 175.08551 * 5 4 3 8 8 C 1.53038 * 109.53883 * 181.33378 * 7 5 4 9 9 C 1.53197 * 109.31170 * 298.63210 * 8 7 5 10 10 N 1.46928 * 108.77489 * 54.63419 * 9 8 7 11 11 C 1.34775 * 120.62985 * 126.41214 * 10 9 8 12 12 O 1.21276 * 120.00244 * 179.97438 * 11 10 9 13 13 C 1.50709 * 119.99953 * 359.97438 * 11 10 9 14 14 C 1.50695 * 109.47003 * 179.97438 * 13 11 10 15 15 C 1.38330 * 119.96465 * 89.99657 * 14 13 11 16 16 C 1.38279 * 120.13677 * 179.97438 * 15 14 13 17 17 C 1.38125 * 120.06805 * 0.02562 * 16 15 14 18 18 C 1.38855 * 119.93045 * 359.97438 * 17 16 15 19 19 O 1.35753 * 120.06405 * 179.97438 * 18 17 16 20 20 C 1.34829 * 117.00365 * 354.45873 * 19 18 17 21 21 H 1.08000 * 119.99636 * 5.06238 * 20 19 18 22 22 C 1.38649 * 120.00221 * 185.05568 * 20 19 18 23 23 N 1.31565 * 120.00037 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00186 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47018 * 60.00138 * 24 22 20 26 26 H 1.48498 * 109.47115 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46993 * 300.00120 * 24 22 20 28 28 C 1.38072 * 119.96721 * 269.72584 * 14 13 11 29 29 C 1.46927 * 118.74002 * 306.39127 * 10 9 8 30 30 H 1.08993 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46794 * 299.99766 * 1 2 3 32 32 H 1.08993 * 109.47296 * 59.99421 * 1 2 3 33 33 H 1.09001 * 109.46511 * 240.00703 * 2 1 3 34 34 H 1.08993 * 109.47296 * 120.00579 * 2 1 3 35 35 H 1.08996 * 109.47073 * 60.00546 * 4 3 2 36 36 H 1.09000 * 109.47027 * 300.00582 * 4 3 2 37 37 H 1.09006 * 109.45744 * 301.34994 * 7 5 4 38 38 H 1.08992 * 109.46351 * 61.30609 * 7 5 4 39 39 H 1.08997 * 109.49886 * 178.67914 * 8 7 5 40 40 H 1.09005 * 109.52750 * 58.59996 * 8 7 5 41 41 H 1.09000 * 109.58208 * 294.84771 * 9 8 7 42 42 H 1.08996 * 109.58448 * 174.42465 * 9 8 7 43 43 H 1.08999 * 109.46858 * 300.00034 * 13 11 10 44 44 H 1.08999 * 109.46686 * 59.99490 * 13 11 10 45 45 H 1.08000 * 119.92929 * 359.97438 * 15 14 13 46 46 H 1.08001 * 119.96554 * 180.02562 * 16 15 14 47 47 H 1.08003 * 120.03250 * 179.97438 * 17 16 15 48 48 H 0.96999 * 119.99817 * 179.97438 * 23 22 20 49 49 H 1.08008 * 120.03533 * 0.02562 * 28 14 13 50 50 H 1.08993 * 109.58608 * 293.82534 * 29 10 9 51 51 H 1.08990 * 109.58687 * 173.39358 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8255 2.9383 0.0001 6 1 3.3503 3.4413 0.8423 7 6 5.3459 3.0619 0.1231 8 6 5.7382 4.5407 0.1573 9 6 5.3028 5.2107 -1.1498 10 7 3.8668 4.9717 -1.3483 11 6 3.0227 6.0003 -1.5628 12 8 1.8394 5.7899 -1.7257 13 6 3.5492 7.4119 -1.6004 14 6 2.4107 8.3660 -1.8543 15 6 1.7082 8.9022 -0.7901 16 6 0.6633 9.7784 -1.0189 17 6 0.3175 10.1206 -2.3117 18 6 1.0208 9.5841 -3.3820 19 8 0.6830 9.9181 -4.6537 20 6 -0.4153 10.6835 -4.8144 21 1 -0.9351 11.0702 -3.9503 22 6 -0.8772 10.9743 -6.0889 23 7 -0.2442 10.5029 -7.1416 24 14 -2.3984 12.0354 -6.3116 25 1 -2.1652 13.3691 -5.7016 26 1 -2.6823 12.1959 -7.7603 27 1 -3.5573 11.3841 -5.6498 28 6 2.0735 8.7085 -3.1487 29 6 3.3684 3.5901 -1.3088 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8333 0.9767 -0.8908 36 1 3.8341 0.9763 0.8891 37 1 5.6765 2.5772 1.0418 38 1 5.8198 2.5801 -0.7321 39 1 6.8190 4.6280 0.2684 40 1 5.2454 5.0290 0.9981 41 1 5.8626 4.7851 -1.9826 42 1 5.4902 6.2828 -1.0909 43 1 4.0176 7.6504 -0.6456 44 1 4.2851 7.5040 -2.3992 45 1 1.9764 8.6358 0.2216 46 1 0.1169 10.1957 -0.1860 47 1 -0.4990 10.8047 -2.4898 48 1 -0.5677 10.7060 -8.0332 49 1 2.6250 8.2927 -3.9790 50 1 3.7705 3.0324 -2.1546 51 1 2.2795 3.5930 -1.3547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089770283.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:38 Heat of formation + Delta-G solvation = -118.654989 kcal Electronic energy + Delta-G solvation = -30176.002756 eV Core-core repulsion = 26039.717959 eV Total energy + Delta-G solvation = -4136.284798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44619 -40.64136 -39.41649 -38.40097 -37.87614 -34.68594 -34.32336 -33.36685 -32.79508 -31.57090 -30.88683 -28.89523 -27.34680 -26.67451 -26.05956 -23.72666 -23.29141 -23.08073 -22.75051 -21.35721 -20.11392 -19.38372 -18.72826 -18.17365 -17.58461 -17.33316 -16.87639 -16.64911 -16.58747 -16.11185 -16.02127 -15.64268 -15.55572 -15.41406 -15.02011 -14.93755 -14.44781 -14.26791 -14.16051 -14.03075 -13.96203 -13.79885 -13.58287 -13.26547 -12.97361 -12.96175 -12.82918 -12.52377 -12.42220 -12.34363 -12.22891 -12.13638 -12.10304 -11.93688 -11.83132 -11.59283 -11.46307 -11.21169 -10.87125 -10.76790 -10.55065 -9.64487 -9.61615 -8.98403 -8.47306 -6.15999 0.51183 0.74959 1.32974 1.44825 1.49987 1.65002 2.02871 2.17741 2.71993 2.83043 3.14202 3.43506 3.66054 3.77274 3.80883 3.89641 4.05712 4.09040 4.11594 4.14429 4.20991 4.29903 4.30515 4.39773 4.42845 4.48031 4.50612 4.56200 4.57478 4.61622 4.66323 4.72416 4.73424 4.82786 4.91305 4.92373 4.99114 5.04194 5.11035 5.12247 5.16571 5.23254 5.24108 5.30219 5.46342 5.59301 5.64327 5.71868 5.74580 6.02281 6.21747 6.30889 6.42423 6.96975 7.22605 7.78491 8.76227 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.002184 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.209654 B =12818.673589 C =13979.550561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.053 3.947 3 O -0.420 6.420 4 C 0.067 3.933 5 C -0.092 4.092 6 H 0.063 0.937 7 C -0.108 4.108 8 C -0.129 4.129 9 C 0.093 3.907 10 N -0.613 5.613 11 C 0.510 3.490 12 O -0.583 6.583 13 C -0.087 4.087 14 C -0.025 4.025 15 C -0.181 4.181 16 C -0.073 4.073 17 C -0.247 4.247 18 C 0.112 3.888 19 O -0.234 6.234 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.923 5.923 24 Si 1.020 2.980 25 H -0.254 1.254 26 H -0.269 1.269 27 H -0.260 1.260 28 C -0.193 4.193 29 C 0.119 3.881 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.119 0.881 48 H 0.273 0.727 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -18.910 19.590 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 O -0.340 6.340 4 C -0.009 4.009 5 C -0.111 4.111 6 H 0.081 0.919 7 C -0.145 4.145 8 C -0.167 4.167 9 C -0.028 4.028 10 N -0.346 5.346 11 C 0.300 3.700 12 O -0.463 6.463 13 C -0.126 4.126 14 C -0.026 4.026 15 C -0.200 4.200 16 C -0.091 4.091 17 C -0.266 4.266 18 C 0.062 3.938 19 O -0.141 6.141 20 C -0.491 4.491 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.839 3.161 25 H -0.178 1.178 26 H -0.194 1.194 27 H -0.185 1.185 28 C -0.212 4.212 29 C -0.004 4.004 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.163 0.837 46 H 0.164 0.836 47 H 0.137 0.863 48 H 0.082 0.918 49 H 0.123 0.877 50 H 0.090 0.910 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.780 -18.917 19.063 30.655 hybrid contribution -1.041 0.227 -0.785 1.323 sum 13.739 -18.690 18.279 29.533 Atomic orbital electron populations 1.21792 0.93998 1.03229 1.02151 1.22603 0.95646 0.82956 1.01070 1.87938 1.22453 1.28008 1.95616 1.22613 0.80642 0.96033 1.01649 1.21468 0.98175 0.94461 0.97028 0.91863 1.21517 0.91707 0.97461 1.03857 1.21912 1.03104 0.95049 0.96637 1.22180 0.78168 1.03316 0.99150 1.48243 1.09431 1.05832 1.71073 1.21046 0.85741 0.87913 0.75329 1.90744 1.18845 1.85904 1.50769 1.20727 0.96580 0.88190 1.07152 1.19200 0.96573 0.95472 0.91349 1.20956 0.98685 1.01483 0.98861 1.21131 0.96340 0.96316 0.95314 1.21297 1.04737 1.07120 0.93453 1.19864 0.94680 0.93914 0.85328 1.83933 1.43700 1.63485 1.22965 1.21794 1.04023 1.28543 0.94775 0.88265 1.26633 1.02682 0.99453 0.93418 1.70191 1.41674 1.45335 0.98906 0.84635 0.75414 0.77858 0.78192 1.17804 1.19384 1.18488 1.20203 1.00621 1.02839 0.97573 1.21511 0.99553 0.81380 0.97930 0.88895 0.92644 0.93425 0.92528 0.91836 0.92040 0.91090 0.89629 0.90243 0.87447 0.91799 0.89716 0.87657 0.83982 0.86057 0.83724 0.83641 0.86332 0.91835 0.87653 0.91022 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.99 0.74 -1.71 16 2 C 0.05 0.82 6.66 71.99 0.48 1.30 16 3 O -0.42 -9.07 9.99 -148.98 -1.49 -10.56 16 4 C 0.07 0.99 5.32 71.98 0.38 1.37 16 5 C -0.09 -1.48 2.58 -10.71 -0.03 -1.51 16 6 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.11 -0.93 5.17 30.62 0.16 -0.77 16 8 C -0.13 -1.02 6.08 30.67 0.19 -0.83 16 9 C 0.09 1.10 6.34 86.36 0.55 1.65 16 10 N -0.61 -13.70 2.97 -818.90 -2.43 -16.13 16 11 C 0.51 15.82 7.69 87.66 0.67 16.49 16 12 O -0.58 -25.41 15.45 -3.02 -0.05 -25.46 16 13 C -0.09 -2.25 4.18 29.10 0.12 -2.12 16 14 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 15 C -0.18 -6.36 9.70 22.30 0.22 -6.14 16 16 C -0.07 -2.80 10.04 22.25 0.22 -2.58 16 17 C -0.25 -11.83 9.17 22.39 0.21 -11.62 16 18 C 0.11 6.12 6.65 22.58 0.15 6.27 16 19 O -0.23 -15.08 9.76 -22.76 -0.22 -15.30 16 20 C -0.42 -25.69 9.49 67.92 0.64 -25.04 16 21 H 0.10 5.66 5.20 -2.91 -0.02 5.64 16 22 C -0.02 -1.48 5.49 84.83 0.47 -1.02 16 23 N -0.92 -59.17 13.67 21.61 0.30 -58.87 16 24 Si 1.02 45.01 29.55 68.60 2.03 47.04 16 25 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 28 C -0.19 -9.14 9.64 22.39 0.22 -8.92 16 29 C 0.12 2.74 5.55 86.37 0.48 3.22 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.92 5.93 -2.39 -0.01 0.90 16 43 H 0.14 2.38 7.64 -2.39 -0.02 2.37 16 44 H 0.12 2.60 7.88 -2.39 -0.02 2.58 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.12 5.70 5.64 -2.91 -0.02 5.69 16 48 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 49 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 50 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.06 1.81 6.85 -2.39 -0.02 1.79 16 Total: -1.00 -89.16 412.72 4.82 -84.35 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.91 Total: 27.94 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 5.78 Total: -33.00 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -2.14 Total: -75.00 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -1.76 Total: -51.32 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -89.16 4.82 -84.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089770283.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.309 kcal (2) G-P(sol) polarization free energy of solvation -89.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds