Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00060 * 2 1 4 4 C 1.38738 * 120.05367 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94378 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05203 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94024 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.47161 * 90.00134 * 7 6 5 9 9 H 1.08991 * 109.47128 * 54.99456 * 8 7 6 10 10 C 1.53006 * 109.46800 * 294.99622 * 8 7 6 11 11 C 1.50698 * 109.47208 * 175.00000 * 8 7 6 12 12 O 1.20827 * 119.99794 * 359.97438 * 11 8 7 13 13 O 1.34224 * 120.00047 * 179.97438 * 11 8 7 14 14 C 1.45205 * 117.00085 * 179.97438 * 13 11 8 15 15 C 1.53040 * 109.46115 * 270.07209 * 14 13 11 16 16 C 1.53192 * 109.31197 * 178.61275 * 15 14 13 17 17 N 1.46923 * 108.77517 * 54.63413 * 16 15 14 18 18 C 1.36942 * 120.63346 * 126.41171 * 17 16 15 19 19 H 1.08003 * 119.99635 * 331.82999 * 18 17 16 20 20 C 1.38804 * 120.00193 * 151.82179 * 18 17 16 21 21 N 1.31618 * 120.00302 * 343.07858 * 20 18 17 22 22 Si 1.86803 * 119.99981 * 163.07601 * 20 18 17 23 23 H 1.48501 * 109.47197 * 90.00476 * 22 20 18 24 24 H 1.48506 * 109.47130 * 210.00047 * 22 20 18 25 25 H 1.48500 * 109.47059 * 330.00063 * 22 20 18 26 26 C 1.46927 * 118.74004 * 306.39138 * 17 16 15 27 27 C 1.53035 * 109.45836 * 150.00045 * 14 13 11 28 28 C 1.38266 * 120.11288 * 0.26758 * 6 5 4 29 29 C 1.38142 * 120.05873 * 359.45553 * 28 6 5 30 30 H 1.08995 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47083 * 300.00362 * 1 2 3 32 32 H 1.09006 * 109.46671 * 60.00142 * 1 2 3 33 33 H 1.08001 * 120.02801 * 359.96016 * 4 3 2 34 34 H 1.07993 * 119.97374 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47223 * 329.99713 * 7 6 5 36 36 H 1.09005 * 109.46956 * 209.99448 * 7 6 5 37 37 H 1.08997 * 109.46739 * 60.00250 * 10 8 7 38 38 H 1.08996 * 109.47065 * 180.02562 * 10 8 7 39 39 H 1.09003 * 109.47176 * 300.00265 * 10 8 7 40 40 H 1.09001 * 109.45963 * 30.02845 * 14 13 11 41 41 H 1.09004 * 109.49669 * 298.56526 * 15 14 13 42 42 H 1.09004 * 109.49870 * 58.65826 * 15 14 13 43 43 H 1.08993 * 109.58554 * 294.84493 * 16 15 14 44 44 H 1.09000 * 109.70079 * 174.49194 * 16 15 14 45 45 H 0.96995 * 120.00474 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.58602 * 293.82168 * 26 17 16 47 47 H 1.08998 * 109.70332 * 173.47049 * 26 17 16 48 48 H 1.09004 * 109.50039 * 301.33515 * 27 14 13 49 49 H 1.08996 * 109.50029 * 61.40582 * 27 14 13 50 50 H 1.08004 * 119.97088 * 179.70789 * 28 6 5 51 51 H 1.07994 * 120.02981 * 180.27000 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9862 5.0185 -0.0005 8 6 4.2183 5.4726 -1.4431 9 1 3.2712 5.4674 -1.9825 10 6 5.1998 4.5182 -2.1265 11 6 4.7899 6.8670 -1.4449 12 8 4.9905 7.4390 -0.3998 13 8 5.0761 7.4734 -2.6077 14 6 5.6234 8.8163 -2.5335 15 6 4.4808 9.8343 -2.5492 16 6 5.0601 11.2479 -2.4359 17 7 6.0530 11.4389 -3.5019 18 6 5.9631 12.5052 -4.3564 19 1 4.9996 12.9404 -4.5772 20 6 7.1101 13.0267 -4.9386 21 7 8.2923 12.7382 -4.4371 22 14 6.9760 14.1381 -6.4341 23 1 6.8577 15.5508 -5.9920 24 1 8.1892 13.9830 -7.2765 25 1 5.7746 13.7639 -7.2227 26 6 7.1446 10.4643 -3.6334 27 6 6.5420 9.0594 -3.7332 28 6 1.9212 3.6047 0.0050 29 6 1.2915 2.3751 -0.0002 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 4.0209 0.3799 0.0016 34 1 5.1346 2.5749 0.0008 35 1 4.9439 4.9382 0.5137 36 1 3.3579 5.7464 0.5128 37 1 4.7863 3.5097 -2.1251 38 1 5.3655 4.8420 -3.1540 39 1 6.1469 4.5234 -1.5870 40 1 6.1941 8.9255 -1.6113 41 1 3.9247 9.7426 -3.4822 42 1 3.8140 9.6458 -1.7077 43 1 5.5389 11.3698 -1.4644 44 1 4.2617 11.9820 -2.5445 45 1 9.0939 13.1023 -4.8441 46 1 7.7935 10.5223 -2.7595 47 1 7.7225 10.6788 -4.5323 48 1 7.3424 8.3195 -3.7344 49 1 5.9667 8.9745 -4.6550 50 1 1.3343 4.5114 0.0094 51 1 0.2130 2.3202 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133990109.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = -92.993924 kcal Electronic energy + Delta-G solvation = -30053.444984 eV Core-core repulsion = 25918.272934 eV Total energy + Delta-G solvation = -4135.172050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.72209 -40.29945 -38.35898 -37.47683 -35.84412 -34.85693 -32.68477 -31.52551 -30.72155 -30.28118 -29.59323 -28.12095 -26.42026 -25.46689 -24.14109 -22.94041 -22.30198 -22.03704 -21.24249 -19.89491 -19.26413 -18.51258 -17.52282 -16.99825 -16.65496 -16.31832 -16.12009 -15.74625 -15.42903 -14.87460 -14.59176 -14.49251 -14.16784 -13.95918 -13.72259 -13.66211 -13.55609 -13.15399 -12.91715 -12.85178 -12.63630 -12.48853 -12.35697 -12.25048 -11.74687 -11.58169 -11.52584 -11.36972 -11.21119 -11.12350 -11.06259 -11.03960 -10.75139 -10.70882 -10.42216 -10.20076 -10.15055 -9.87772 -9.65096 -9.43836 -9.32271 -8.50234 -8.42113 -6.73305 -5.82632 -3.25202 1.00199 1.05760 2.39334 2.87136 2.90539 3.36470 3.42663 3.43529 3.46089 4.40422 4.47318 4.48630 4.53557 4.61544 4.66019 4.71147 4.75308 4.93149 5.01280 5.04179 5.09311 5.18370 5.26328 5.28065 5.37151 5.42145 5.48606 5.53431 5.59778 5.61124 5.71621 5.74665 5.89620 5.94462 5.98389 6.01021 6.02627 6.22765 6.34603 6.39479 6.41343 6.42207 6.50863 6.58426 6.72053 6.87369 6.97230 7.01162 7.27923 7.57471 7.76844 8.00219 8.41016 9.16953 9.79788 10.36536 11.26618 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.001684 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.202693 B =16621.488568 C =16743.752068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.114 4.114 7 C -0.063 4.063 8 C -0.078 4.078 9 H 0.106 0.894 10 C -0.147 4.147 11 C 0.461 3.539 12 O -0.511 6.511 13 O -0.355 6.355 14 C 0.098 3.902 15 C -0.145 4.145 16 C 0.149 3.851 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.174 3.826 27 C -0.135 4.135 28 C -0.074 4.074 29 C -0.206 4.206 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.255 0.745 46 H 0.022 0.978 47 H 0.096 0.904 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.126 0.874 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 -25.304 8.434 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.114 4.114 7 C -0.100 4.100 8 C -0.097 4.097 9 H 0.124 0.876 10 C -0.204 4.204 11 C 0.303 3.697 12 O -0.400 6.400 13 O -0.272 6.272 14 C 0.044 3.956 15 C -0.185 4.185 16 C 0.022 3.978 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.048 3.952 27 C -0.174 4.174 28 C -0.092 4.092 29 C -0.225 4.225 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.040 0.960 47 H 0.114 0.886 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.144 0.856 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.593 -25.202 8.660 29.474 hybrid contribution -0.322 0.794 -0.639 1.069 sum -12.916 -24.408 8.020 28.755 Atomic orbital electron populations 1.23055 0.78363 1.03940 1.01423 1.86065 1.21418 1.27064 1.88783 1.19062 0.92428 0.84117 0.96776 1.20432 0.91341 0.98687 1.06436 1.20929 1.00005 0.90864 0.97300 1.19723 0.93488 0.94933 1.03303 1.20428 1.01776 0.93247 0.94543 1.20998 1.01099 0.89094 0.98556 0.87586 1.21851 0.98330 0.98922 1.01333 1.23565 0.75190 0.88514 0.82401 1.90646 1.49589 1.66475 1.33248 1.86553 1.74152 1.32575 1.33880 1.22937 0.95207 0.76526 1.00940 1.22455 0.97207 0.97376 1.01454 1.20857 0.92891 0.92300 0.91745 1.44107 1.28378 1.26274 1.32724 1.19179 0.92371 1.07689 1.19153 0.91567 1.25060 0.95631 0.98559 1.00308 1.70014 0.97184 1.47544 1.39992 0.86286 0.77102 0.80452 0.82863 1.21351 1.21507 1.20446 1.20806 0.89557 0.82882 1.01968 1.22450 0.97636 1.01032 0.96317 1.20888 0.93988 0.97160 0.97205 1.21221 1.00021 0.92314 1.08908 0.88260 0.92636 0.92585 0.85198 0.85096 0.89982 0.89909 0.90906 0.90993 0.92035 0.90405 0.91408 0.92748 0.96083 0.92115 0.93521 0.96022 0.88577 0.92432 0.91493 0.85609 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.71 10.50 -19.44 -0.20 -2.92 16 3 C 0.12 1.07 6.69 -39.21 -0.26 0.81 16 4 C -0.15 -1.27 9.99 -39.43 -0.39 -1.66 16 5 C -0.07 -0.59 7.95 -39.60 -0.31 -0.90 16 6 C -0.11 -0.99 4.71 -104.60 -0.49 -1.48 16 7 C -0.06 -0.60 4.19 -27.88 -0.12 -0.72 16 8 C -0.08 -0.82 2.82 -91.77 -0.26 -1.08 16 9 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 11 C 0.46 6.83 7.23 36.00 0.26 7.09 16 12 O -0.51 -8.94 15.14 -18.75 -0.28 -9.22 16 13 O -0.36 -5.86 9.78 -39.24 -0.38 -6.25 16 14 C 0.10 1.82 2.41 -26.69 -0.06 1.76 16 15 C -0.15 -2.74 5.72 -26.61 -0.15 -2.89 16 16 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 17 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 18 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.00 11.19 55.49 0.62 -25.38 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 27 C -0.13 -2.65 5.74 -26.61 -0.15 -2.80 16 28 C -0.07 -0.62 9.69 -39.61 -0.38 -1.00 16 29 C -0.21 -1.65 9.04 -39.43 -0.36 -2.00 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 35 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 36 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.07 0.57 6.26 -51.93 -0.33 0.24 16 38 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 2.52 6.07 -51.93 -0.31 2.21 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 50 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 51 H 0.13 0.76 6.30 -52.49 -0.33 0.43 16 LS Contribution 408.27 15.07 6.15 6.15 Total: -1.00 -31.69 408.27 -9.71 -41.40 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.42 Total: -0.26 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.65 Total: -4.57 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.11 Total: -40.82 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.87 Total: -18.39 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.69 -9.71 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133990109.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.590 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds