Wall clock time and date at job start Wed Apr 1 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99770 * 2 1 4 4 C 1.52998 * 109.46765 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47320 * 65.00041 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46927 * 59.99717 * 11 9 7 13 13 H 1.48496 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47040 * 299.99940 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 5 19 19 C 1.35897 * 116.99793 * 179.97438 * 18 17 15 20 20 C 1.38764 * 120.17381 * 359.72191 * 19 18 17 21 21 C 1.37829 * 119.71494 * 179.85957 * 20 19 18 22 22 C 1.38965 * 120.62145 * 0.55289 * 21 20 19 23 23 C 1.37705 * 119.76799 * 359.43636 * 22 21 20 24 24 C 1.38420 * 120.17523 * 179.97438 * 19 18 17 25 25 C 1.50642 * 122.55264 * 180.81219 * 23 22 21 26 26 C 1.52718 * 110.60468 * 342.00374 * 25 23 22 27 27 C 1.53314 * 108.40889 * 51.10434 * 26 25 23 28 28 C 1.50644 * 117.69676 * 179.12838 * 22 21 20 29 29 H 1.08999 * 109.47112 * 60.00586 * 1 2 3 30 30 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47260 * 300.00210 * 1 2 3 32 32 H 1.08993 * 109.47691 * 59.99666 * 3 2 1 33 33 H 1.08999 * 109.46539 * 299.99231 * 3 2 1 34 34 H 1.08994 * 109.47354 * 304.99932 * 4 3 2 35 35 H 1.09001 * 109.47139 * 184.99506 * 4 3 2 36 36 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 37 37 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 38 38 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 39 39 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 40 40 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 41 41 H 1.08001 * 120.14101 * 0.13435 * 20 19 18 42 42 H 1.07996 * 119.69135 * 180.24747 * 21 20 19 43 43 H 1.08005 * 119.75110 * 0.03993 * 24 19 18 44 44 H 1.08997 * 109.24908 * 102.29575 * 25 23 22 45 45 H 1.09005 * 109.25008 * 221.71336 * 25 23 22 46 46 H 1.09000 * 109.67677 * 291.37440 * 26 25 23 47 47 H 1.09004 * 109.70997 * 170.85727 * 26 25 23 48 48 H 1.08999 * 109.68339 * 170.44891 * 27 26 25 49 49 H 1.09008 * 109.68124 * 49.90157 * 27 26 25 50 50 H 1.09006 * 109.25381 * 282.48166 * 28 22 21 51 51 H 1.08999 * 109.25503 * 41.91500 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3402 7 6 5.5017 -1.2981 -0.9411 8 1 6.2201 -0.5462 -0.6497 9 6 5.8614 -2.6292 -0.9480 10 7 4.9868 -3.5449 -1.3034 11 14 7.5909 -3.1319 -0.4526 12 1 7.8522 -2.6969 0.9429 13 1 7.7224 -4.6083 -0.5432 14 1 8.5729 -2.4903 -1.3632 15 6 4.2633 1.3328 -2.3201 16 8 4.6282 0.8188 -3.3563 17 6 4.1360 2.8315 -2.2263 18 8 4.4985 3.4195 -3.4772 19 6 4.4374 4.7744 -3.5628 20 6 4.0314 5.5248 -2.4684 21 6 3.9757 6.8986 -2.5647 22 6 4.3112 7.5391 -3.7514 23 6 4.7146 6.7967 -4.8387 24 6 4.7747 5.4129 -4.7437 25 6 5.1096 7.4266 -6.1489 26 6 4.5870 8.8590 -6.2357 27 6 5.0057 9.6051 -4.9635 28 6 4.2077 9.0415 -3.7896 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.8508 0.5686 0.8426 35 1 3.9785 2.1765 0.0901 36 1 3.3858 -1.3632 -0.6712 37 1 3.9139 -1.2124 -2.3644 38 1 5.2397 -4.4812 -1.3079 39 1 3.1057 3.0943 -1.9862 40 1 4.7976 3.2041 -1.4443 41 1 3.7646 5.0347 -1.5437 42 1 3.6635 7.4824 -1.7115 43 1 5.0863 4.8302 -5.5980 44 1 6.1965 7.4351 -6.2303 45 1 4.6930 6.8417 -6.9689 46 1 3.4998 8.8488 -6.3143 47 1 5.0133 9.3536 -7.1085 48 1 4.7936 10.6684 -5.0749 49 1 6.0714 9.4595 -4.7865 50 1 3.1611 9.3271 -3.8965 51 1 4.5986 9.4526 -2.8589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134627236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:45 Heat of formation + Delta-G solvation = -125.532745 kcal Electronic energy + Delta-G solvation = -30447.714872 eV Core-core repulsion = 26311.131833 eV Total energy + Delta-G solvation = -4136.583039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60671 -40.75253 -39.37250 -38.70282 -36.62061 -36.14833 -34.83077 -33.47461 -31.41841 -30.73418 -30.50952 -29.33032 -28.01888 -27.10290 -24.84962 -24.57875 -24.01450 -23.20050 -23.17311 -20.56928 -20.03487 -19.01342 -18.64487 -18.07296 -17.61201 -17.31816 -17.00185 -16.74958 -16.62365 -16.46712 -15.98404 -15.89896 -15.58556 -15.38237 -15.16235 -14.68164 -14.58486 -14.34616 -14.24254 -13.86639 -13.77026 -13.58143 -13.42541 -13.32870 -13.07546 -13.00646 -12.93244 -12.75446 -12.68472 -12.56199 -12.19199 -12.12777 -11.96841 -11.75065 -11.71799 -11.57590 -11.32517 -11.23105 -10.70586 -10.62911 -10.53352 -9.72028 -9.50752 -8.98632 -8.20435 -6.35249 0.36330 0.45562 1.35439 1.40815 1.47323 1.62495 1.67097 2.37655 2.66679 2.74720 2.95888 3.09359 3.43205 3.75487 3.79335 3.83992 3.97440 3.99439 4.08553 4.17184 4.19492 4.26868 4.28033 4.31043 4.40146 4.47907 4.53619 4.56612 4.60166 4.61741 4.69125 4.78846 4.86949 4.92711 4.94585 5.05166 5.07871 5.12925 5.14362 5.18689 5.26648 5.26909 5.40567 5.48519 5.50896 5.53990 5.72584 5.82085 5.91330 6.07646 6.32733 6.40815 6.68467 6.74886 7.24497 7.39287 8.86946 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002385 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.065178 B =11739.182687 C =13173.247770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.042 3.958 4 C 0.098 3.902 5 N -0.588 5.588 6 C 0.273 3.727 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.005 3.995 10 N -0.928 5.928 11 Si 0.968 3.032 12 H -0.257 1.257 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.494 3.506 16 O -0.587 6.587 17 C 0.057 3.943 18 O -0.326 6.326 19 C 0.103 3.897 20 C -0.212 4.212 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.044 4.044 24 C -0.178 4.178 25 C -0.085 4.085 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.073 4.073 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.035 0.965 37 H -0.014 1.014 38 H 0.266 0.734 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.060 0.940 50 H 0.083 0.917 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 29.930 1.449 30.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.035 4.035 4 C -0.024 4.024 5 N -0.319 5.319 6 C 0.152 3.848 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.194 4.194 10 N -0.568 5.568 11 Si 0.792 3.208 12 H -0.182 1.182 13 H -0.204 1.204 14 H -0.205 1.205 15 C 0.281 3.719 16 O -0.467 6.467 17 C -0.021 4.021 18 O -0.239 6.239 19 C 0.059 3.941 20 C -0.230 4.230 21 C -0.096 4.096 22 C -0.122 4.122 23 C -0.044 4.044 24 C -0.197 4.197 25 C -0.122 4.122 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.110 4.110 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.053 0.947 37 H 0.004 0.996 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.079 0.921 50 H 0.101 0.899 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.620 29.145 0.767 29.897 hybrid contribution 0.543 -1.305 -0.015 1.414 sum -6.077 27.839 0.752 28.505 Atomic orbital electron populations 1.22853 0.80021 1.03058 1.00849 1.88050 1.21153 1.28984 1.95535 1.23233 0.93224 0.84974 1.02092 1.22043 0.93489 1.00531 0.86351 1.48071 1.64179 1.07967 1.11718 1.18688 0.95810 0.75163 0.95184 1.21722 0.98241 0.92691 1.45707 0.92701 1.25894 1.01949 0.96401 0.95113 1.70071 1.36657 1.01437 1.48620 0.85463 0.78880 0.77147 0.79271 1.18163 1.20355 1.20474 1.20812 0.77882 0.89590 0.83591 1.90679 1.48218 1.76076 1.31707 1.22626 1.04039 0.89093 0.86346 1.86143 1.83708 1.18868 1.35210 1.19265 0.97589 0.81365 0.95904 1.21464 1.07294 0.95679 0.98570 1.21319 0.96902 0.93255 0.98134 1.19912 1.02148 0.97200 0.92989 1.19636 0.97063 0.91034 0.96641 1.20583 1.07527 0.94833 0.96786 1.20559 1.01573 0.97081 0.92941 1.21544 1.01231 0.93726 0.98866 1.21571 0.99911 1.00208 0.94058 1.20462 1.01542 0.88921 1.00094 0.93906 0.90238 0.91679 0.88281 0.92949 0.89744 0.85381 0.94741 0.99596 0.92488 0.86236 0.86250 0.83120 0.82741 0.86707 0.90132 0.90732 0.91645 0.90040 0.89691 0.92071 0.89902 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -13.87 9.53 -148.98 -1.42 -15.29 16 3 C 0.04 1.03 6.28 71.98 0.45 1.48 16 4 C 0.10 2.88 5.62 86.38 0.49 3.36 16 5 N -0.59 -25.58 2.42 -826.15 -2.00 -27.58 16 6 C 0.27 15.46 4.98 85.63 0.43 15.88 16 7 C -0.55 -32.58 9.39 25.60 0.24 -32.34 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.17 16 9 C 0.01 0.32 5.46 84.66 0.46 0.78 16 10 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 11 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 15 C 0.49 21.87 7.75 87.66 0.68 22.55 16 16 O -0.59 -33.66 16.08 16.00 0.26 -33.40 16 17 C 0.06 1.70 3.78 71.24 0.27 1.97 16 18 O -0.33 -11.65 9.67 -73.35 -0.71 -12.36 16 19 C 0.10 2.96 6.68 22.44 0.15 3.11 16 20 C -0.21 -4.40 9.04 22.30 0.20 -4.19 16 21 C -0.08 -1.32 9.60 22.35 0.21 -1.11 16 22 C -0.12 -2.17 5.74 -19.83 -0.11 -2.28 16 23 C -0.04 -0.93 5.74 -19.87 -0.11 -1.04 16 24 C -0.18 -4.90 9.55 22.46 0.21 -4.69 16 25 C -0.08 -1.38 5.67 29.74 0.17 -1.21 16 26 C -0.12 -1.34 5.98 30.61 0.18 -1.16 16 27 C -0.12 -1.21 5.98 30.61 0.18 -1.03 16 28 C -0.07 -0.82 5.67 29.74 0.17 -0.65 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.19 7.33 -2.39 -0.02 1.17 16 34 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 35 H 0.13 2.45 6.43 -2.39 -0.02 2.43 16 36 H 0.03 2.03 7.11 -2.39 -0.02 2.01 16 37 H -0.01 -0.94 7.42 -2.38 -0.02 -0.96 16 38 H 0.27 15.71 8.31 -92.72 -0.77 14.94 16 39 H 0.12 2.64 6.81 -2.38 -0.02 2.63 16 40 H 0.12 2.74 6.94 -2.39 -0.02 2.72 16 41 H 0.15 2.27 6.33 -2.91 -0.02 2.25 16 42 H 0.15 1.57 8.05 -2.91 -0.02 1.55 16 43 H 0.11 3.32 8.05 -2.91 -0.02 3.30 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.22 8.12 -2.38 -0.02 1.20 16 46 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.06 0.69 8.10 -2.38 -0.02 0.67 16 50 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 51 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 Total: -1.00 -87.48 411.98 4.87 -82.61 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.91 Total: 14.41 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.52 Total: 1.37 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.71 Total: -85.72 kcal Atomic # 8 Polarization: -59.18 SS G_CDS: -1.87 Total: -61.05 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -87.48 4.87 -82.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134627236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.924 kcal (2) G-P(sol) polarization free energy of solvation -87.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds