Wall clock time and date at job start Wed Apr 1 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46507 * 120.00023 * 2 1 4 4 C 1.53000 * 109.47036 * 270.00259 * 3 2 1 5 5 C 1.52996 * 109.47061 * 179.97438 * 4 3 2 6 6 C 1.53174 * 109.54269 * 65.44390 * 5 4 3 7 7 C 1.53098 * 109.16313 * 176.84876 * 6 5 4 8 8 O 1.42903 * 109.41159 * 302.38694 * 7 6 5 9 9 C 1.42902 * 114.09578 * 61.16434 * 8 7 6 10 10 C 1.53090 * 109.41330 * 298.83564 * 9 8 7 11 11 C 1.34777 * 119.99953 * 180.02562 * 2 1 3 12 12 O 1.21279 * 119.99542 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99954 * 359.97438 * 11 2 1 14 14 C 1.50701 * 109.46732 * 180.02562 * 13 11 2 15 15 C 1.38305 * 119.92899 * 269.72106 * 14 13 11 16 16 C 1.38099 * 120.06721 * 179.72881 * 15 14 13 17 17 C 1.38881 * 119.93141 * 0.56786 * 16 15 14 18 18 O 1.35751 * 120.06778 * 179.68108 * 17 16 15 19 19 C 1.34835 * 116.99331 * 174.49018 * 18 17 16 20 20 H 1.07991 * 120.00789 * 5.05827 * 19 18 17 21 21 C 1.38654 * 119.99337 * 185.06005 * 19 18 17 22 22 N 1.31559 * 120.00563 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99726 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47137 * 90.00059 * 23 21 19 25 25 H 1.48505 * 109.47133 * 209.99632 * 23 21 19 26 26 H 1.48498 * 109.47217 * 329.99774 * 23 21 19 27 27 C 1.38878 * 119.85982 * 359.70690 * 17 16 15 28 28 C 1.38102 * 119.93298 * 0.02562 * 27 17 16 29 29 H 1.09002 * 109.47119 * 89.99602 * 1 2 3 30 30 H 1.08999 * 109.46833 * 210.00103 * 1 2 3 31 31 H 1.09005 * 109.46874 * 329.99711 * 1 2 3 32 32 H 1.08991 * 109.47141 * 150.00405 * 3 2 1 33 33 H 1.09002 * 109.46642 * 29.99895 * 3 2 1 34 34 H 1.09004 * 109.47300 * 59.99565 * 4 3 2 35 35 H 1.09005 * 109.47022 * 300.00119 * 4 3 2 36 36 H 1.09002 * 109.61880 * 305.22333 * 5 4 3 37 37 H 1.08994 * 109.52470 * 296.75259 * 6 5 4 38 38 H 1.08998 * 109.52378 * 56.94537 * 6 5 4 39 39 H 1.08999 * 109.48232 * 182.41010 * 7 6 5 40 40 H 1.08997 * 109.47982 * 62.36957 * 7 6 5 41 41 H 1.09007 * 109.48354 * 178.85499 * 9 8 7 42 42 H 1.08996 * 109.49660 * 58.82511 * 9 8 7 43 43 H 1.08999 * 109.52479 * 297.70217 * 10 9 8 44 44 H 1.09002 * 109.52691 * 177.51894 * 10 9 8 45 45 H 1.09000 * 109.47023 * 299.99948 * 13 11 2 46 46 H 1.09000 * 109.47145 * 60.00303 * 13 11 2 47 47 H 1.07999 * 119.96631 * 359.97438 * 15 14 13 48 48 H 1.07999 * 120.03615 * 180.27831 * 16 15 14 49 49 H 0.97002 * 120.00345 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.03439 * 179.97438 * 27 17 16 51 51 H 1.07997 * 119.96489 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2169 3.0358 -1.4425 6 6 4.6102 2.8237 -0.8425 7 6 5.3953 4.1358 -0.9187 8 8 5.4685 4.5671 -2.2791 9 6 4.1974 4.8268 -2.8781 10 6 3.3642 3.5425 -2.8806 11 6 2.1389 -1.1672 -0.0005 12 8 3.3517 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 6 2.3648 -3.6177 -0.0005 15 6 2.8088 -4.1459 -1.1991 16 6 3.7105 -5.1919 -1.2025 17 6 4.1625 -5.7210 -0.0006 18 8 5.0439 -6.7535 -0.0007 19 6 5.5292 -7.1440 1.1952 20 1 5.1531 -6.6960 2.1030 21 6 6.5111 -8.1207 1.2592 22 7 6.9690 -8.6668 0.1534 23 14 7.1830 -8.6623 2.9160 24 1 6.3726 -9.7945 3.4326 25 1 8.5950 -9.0950 2.7600 26 1 7.1155 -7.5283 3.8722 27 6 3.7103 -5.1921 1.2013 28 6 2.8128 -4.1425 1.1980 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 3.1499 1.1384 0.5137 33 1 1.6084 2.0284 0.5138 34 1 1.5000 1.8408 -1.9564 35 1 3.0416 0.9508 -1.9564 36 1 2.6732 3.7719 -0.8504 37 1 4.5154 2.5160 0.1988 38 1 5.1354 2.0518 -1.4050 39 1 6.4024 3.9798 -0.5322 40 1 4.8908 4.8964 -0.3229 41 1 4.3414 5.1686 -3.9031 42 1 3.6771 5.5965 -2.3081 43 1 3.8641 2.7851 -3.4843 44 1 2.3781 3.7487 -3.2968 45 1 0.7591 -2.5302 0.8897 46 1 0.7584 -2.5298 -0.8903 47 1 2.4529 -3.7374 -2.1334 48 1 4.0603 -5.6010 -2.1388 49 1 7.6558 -9.3504 0.1983 50 1 4.0596 -5.6017 2.1376 51 1 2.4612 -3.7305 2.1323 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154692179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:54 Heat of formation + Delta-G solvation = -119.907709 kcal Electronic energy + Delta-G solvation = -29942.968138 eV Core-core repulsion = 25806.629019 eV Total energy + Delta-G solvation = -4136.339120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23380 -40.61076 -40.21233 -38.30884 -37.07799 -35.62021 -34.40372 -32.97891 -32.06379 -31.79427 -30.92776 -28.30817 -27.58150 -27.13852 -25.54539 -24.49096 -23.64956 -23.07035 -22.14269 -20.97714 -20.05883 -19.82977 -18.83581 -18.01129 -17.40465 -16.98518 -16.84554 -16.73679 -16.33834 -16.17031 -15.90384 -15.81553 -15.54315 -15.49611 -15.09154 -14.88769 -14.56941 -14.42763 -14.22521 -13.99755 -13.88952 -13.60334 -13.38615 -13.27340 -13.15246 -12.97615 -12.91253 -12.74640 -12.47328 -12.31291 -12.27777 -12.22987 -12.13500 -12.05273 -11.78683 -11.31695 -11.21068 -11.18989 -10.87689 -10.70992 -10.47457 -9.77848 -9.56299 -8.90605 -8.48087 -6.16385 0.59974 0.66508 1.32818 1.42709 1.51128 1.73346 2.13540 2.17129 2.82652 2.97902 3.14950 3.51380 3.68693 3.69853 3.82060 3.88824 3.97272 4.03258 4.06256 4.17852 4.24347 4.30075 4.36603 4.38904 4.46592 4.50454 4.57678 4.58939 4.60773 4.67419 4.73437 4.76690 4.78792 4.82653 4.88725 4.89086 5.02336 5.03534 5.09063 5.13919 5.14547 5.16394 5.25695 5.29231 5.45836 5.54983 5.68851 5.70434 5.76935 6.01900 6.21012 6.27847 6.47090 6.96243 7.31439 7.77597 8.75396 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.002021 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.232263 B =13848.620054 C =15032.143504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.619 5.619 3 C 0.112 3.888 4 C -0.118 4.118 5 C -0.080 4.080 6 C -0.153 4.153 7 C 0.060 3.940 8 O -0.412 6.412 9 C 0.055 3.945 10 C -0.149 4.149 11 C 0.505 3.495 12 O -0.580 6.580 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.059 4.059 16 C -0.206 4.206 17 C 0.111 3.889 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.021 2.979 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.243 4.243 28 C -0.061 4.061 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.126 0.874 47 H 0.144 0.856 48 H 0.111 0.889 49 H 0.273 0.727 50 H 0.118 0.882 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 28.852 -0.134 34.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.352 5.352 3 C -0.011 4.011 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.191 4.191 7 C -0.017 4.017 8 O -0.331 6.331 9 C -0.021 4.021 10 C -0.186 4.186 11 C 0.294 3.706 12 O -0.459 6.459 13 C -0.115 4.115 14 C -0.145 4.145 15 C -0.077 4.077 16 C -0.226 4.226 17 C 0.061 3.939 18 O -0.140 6.140 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.179 1.179 27 C -0.262 4.262 28 C -0.079 4.079 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.161 0.839 48 H 0.129 0.871 49 H 0.082 0.918 50 H 0.136 0.864 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.358 28.601 -0.474 33.459 hybrid contribution 0.843 -0.985 0.456 1.374 sum -16.515 27.616 -0.018 32.178 Atomic orbital electron populations 1.22143 0.76700 1.05123 1.03331 1.48032 1.08642 1.05135 1.73378 1.21597 0.97424 0.84969 0.97062 1.21861 1.00555 0.96174 0.97039 1.21128 0.94920 0.97100 0.96703 1.22274 0.96885 0.98088 1.01839 1.22666 1.01384 0.94819 0.82816 1.87910 1.30500 1.87409 1.27328 1.22755 0.83915 0.96143 0.99273 1.22232 1.01634 0.98031 0.96730 1.21222 0.87696 0.86522 0.75140 1.90743 1.16538 1.87926 1.50705 1.20567 0.96473 0.87335 1.07143 1.19280 1.03103 0.99713 0.92430 1.20848 0.94587 0.93592 0.98654 1.20432 1.04770 1.02092 0.95277 1.19925 0.90454 0.88133 0.95354 1.83940 1.53147 1.43404 1.33550 1.21820 1.21283 1.22322 0.83604 0.88269 1.26637 0.95818 0.95882 1.03917 1.70191 1.28959 1.26984 1.29849 0.84570 0.77718 0.79141 0.74636 1.18406 1.19505 1.17901 1.21228 1.04931 1.02864 0.97211 1.20922 0.94653 0.93752 0.98533 0.91285 0.89389 0.88943 0.92546 0.87546 0.89909 0.94961 0.88573 0.90496 0.93987 0.89136 0.91210 0.88197 0.91412 0.93182 0.88716 0.85463 0.85569 0.83869 0.87080 0.91828 0.86440 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.29 127.77 1.31 1.77 16 2 N -0.62 -10.22 2.87 -846.74 -2.43 -12.65 16 3 C 0.11 1.75 5.22 86.38 0.45 2.20 16 4 C -0.12 -1.81 5.01 30.59 0.15 -1.65 16 5 C -0.08 -1.05 2.27 -10.68 -0.02 -1.08 16 6 C -0.15 -2.74 5.10 30.69 0.16 -2.59 16 7 C 0.06 0.97 6.84 72.01 0.49 1.46 16 8 O -0.41 -8.18 10.77 -148.98 -1.60 -9.78 16 9 C 0.06 0.72 6.84 72.01 0.49 1.22 16 10 C -0.15 -1.93 5.42 30.68 0.17 -1.76 16 11 C 0.50 12.81 7.67 87.66 0.67 13.48 16 12 O -0.58 -21.72 15.61 -3.03 -0.05 -21.76 16 13 C -0.08 -1.59 4.38 29.10 0.13 -1.47 16 14 C -0.14 -4.77 4.38 -19.83 -0.09 -4.86 16 15 C -0.06 -2.16 9.69 22.25 0.22 -1.94 16 16 C -0.21 -9.59 9.99 22.39 0.22 -9.37 16 17 C 0.11 5.98 6.65 22.58 0.15 6.13 16 18 O -0.23 -14.88 9.76 -22.80 -0.22 -15.10 16 19 C -0.41 -25.34 9.49 67.92 0.64 -24.70 16 20 H 0.10 5.60 5.20 -2.92 -0.02 5.59 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 22 N -0.92 -58.63 13.67 21.61 0.30 -58.33 16 23 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 C -0.24 -11.44 9.17 22.39 0.21 -11.23 16 28 C -0.06 -2.26 9.69 22.25 0.22 -2.04 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.39 6.44 -2.39 -0.02 0.37 16 31 H 0.09 0.24 7.89 -2.38 -0.02 0.22 16 32 H 0.06 1.24 5.94 -2.39 -0.01 1.22 16 33 H 0.11 0.93 7.89 -2.39 -0.02 0.91 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.34 6.75 -2.39 -0.02 1.32 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.13 1.84 7.34 -2.39 -0.02 1.83 16 46 H 0.13 1.86 8.05 -2.39 -0.02 1.84 16 47 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 48 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 49 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 51 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -87.09 410.35 4.97 -82.13 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.91 Total: 26.32 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 6.04 Total: -37.47 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -2.14 Total: -70.99 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.87 Total: -46.65 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -87.09 4.97 -82.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154692179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.781 kcal (2) G-P(sol) polarization free energy of solvation -87.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds