Wall clock time and date at job start Wed Apr 1 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46974 * 2 1 4 4 C 1.42902 * 113.99796 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46966 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46972 * 184.98645 * 5 4 3 7 7 C 1.52995 * 115.55037 * 296.51820 * 6 5 4 8 8 N 1.46494 * 109.47153 * 271.19495 * 7 6 5 9 9 C 1.34784 * 120.00183 * 185.03868 * 8 7 6 10 10 O 1.21279 * 119.99424 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99894 * 179.72926 * 9 8 7 12 12 C 1.50704 * 109.46640 * 180.27532 * 11 9 8 13 13 C 1.38299 * 119.92844 * 269.72429 * 12 11 9 14 14 C 1.38104 * 120.06807 * 179.73047 * 13 12 11 15 15 C 1.38883 * 119.92712 * 0.56393 * 14 13 12 16 16 O 1.35747 * 120.06870 * 179.68587 * 15 14 13 17 17 C 1.34833 * 117.00308 * 174.44222 * 16 15 14 18 18 H 1.08002 * 119.99408 * 5.06361 * 17 16 15 19 19 C 1.38649 * 120.00170 * 185.05599 * 17 16 15 20 20 N 1.31556 * 120.00293 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00057 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47141 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.46694 * 209.99403 * 21 19 17 24 24 H 1.48496 * 109.46812 * 329.99751 * 21 19 17 25 25 C 1.38880 * 119.86521 * 359.71011 * 15 14 13 26 26 C 1.38101 * 119.92665 * 359.97438 * 25 15 14 27 27 C 1.52998 * 117.51533 * 82.22079 * 6 5 4 28 28 C 1.52997 * 60.00329 * 107.47829 * 27 6 5 29 29 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 300.00108 * 1 2 3 31 31 H 1.09001 * 109.46621 * 60.00281 * 1 2 3 32 32 H 1.08993 * 109.47451 * 239.99466 * 2 1 3 33 33 H 1.09001 * 109.46621 * 119.99718 * 2 1 3 34 34 H 1.09005 * 109.47298 * 59.99869 * 4 3 2 35 35 H 1.09003 * 109.47243 * 299.99642 * 4 3 2 36 36 H 1.08994 * 109.47248 * 64.98863 * 5 4 3 37 37 H 1.08996 * 109.47247 * 304.98416 * 5 4 3 38 38 H 1.08996 * 109.46965 * 151.19780 * 7 6 5 39 39 H 1.09005 * 109.47340 * 31.20003 * 7 6 5 40 40 H 0.97000 * 120.00134 * 5.04315 * 8 7 6 41 41 H 1.09000 * 109.46795 * 300.27267 * 11 9 8 42 42 H 1.08994 * 109.47651 * 60.27419 * 11 9 8 43 43 H 1.07994 * 119.96800 * 359.97422 * 13 12 11 44 44 H 1.07991 * 120.03575 * 180.27391 * 14 13 12 45 45 H 0.96992 * 120.00339 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.03787 * 179.97438 * 25 15 14 47 47 H 1.08008 * 119.96429 * 180.02562 * 26 25 15 48 48 H 1.08998 * 117.49736 * 214.96966 * 27 6 5 49 49 H 1.09002 * 117.50001 * 359.97438 * 27 6 5 50 50 H 1.08994 * 117.50280 * 252.51329 * 28 27 6 51 51 H 1.09001 * 117.50307 * 107.48159 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3454 3.0605 -0.1249 7 6 6.1521 2.4721 1.0343 8 7 6.3405 3.4943 2.0666 9 6 7.1115 3.2332 3.1409 10 8 7.6488 2.1517 3.2531 11 6 7.3102 4.2869 4.1997 12 6 8.2122 3.7490 5.2806 13 6 7.6685 3.0933 6.3701 14 6 8.4928 2.5944 7.3595 15 6 9.8683 2.7619 7.2652 16 8 10.6807 2.2782 8.2392 17 6 12.0095 2.3723 8.0308 18 1 12.3841 2.8899 7.1601 19 6 12.8949 1.8049 8.9344 20 7 14.1914 1.8963 8.7308 21 14 12.2468 0.9092 10.4402 22 1 12.0468 -0.5258 10.1147 23 1 13.2262 1.0332 11.5495 24 1 10.9523 1.5081 10.8533 25 6 10.4108 3.4257 6.1726 26 6 9.5816 3.9166 5.1834 27 6 5.9496 2.9632 -1.5271 28 6 5.8998 4.3125 -0.8076 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8341 0.9764 -0.8892 35 1 3.8333 0.9767 0.8909 36 1 3.4988 3.4020 0.9307 37 1 3.3502 3.4409 -0.8426 38 1 7.1242 2.1409 0.6693 39 1 5.6144 1.6233 1.4572 40 1 5.9104 4.3591 1.9771 41 1 7.7660 5.1701 3.7523 42 1 6.3459 4.5549 4.6313 43 1 6.5985 2.9679 6.4454 44 1 8.0680 2.0786 8.2078 45 1 14.8107 1.4990 9.3627 46 1 11.4800 3.5579 6.0967 47 1 10.0029 4.4327 4.3332 48 1 6.9218 2.4800 -1.6238 49 1 5.2643 2.8118 -2.3611 50 1 5.1817 5.0490 -1.1681 51 1 6.8393 4.7170 -0.4308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158718552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:43 Heat of formation + Delta-G solvation = -73.179199 kcal Electronic energy + Delta-G solvation = -29104.463191 eV Core-core repulsion = 24970.150372 eV Total energy + Delta-G solvation = -4134.312819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.11805 -39.25199 -38.69190 -37.94328 -36.59540 -34.08578 -32.50105 -32.47099 -31.55316 -30.25864 -30.18656 -27.89386 -26.10786 -24.70988 -23.93977 -23.20549 -22.74019 -22.05138 -20.99786 -20.11029 -19.39991 -17.84368 -17.28655 -17.17246 -17.00172 -16.61759 -16.22053 -15.70706 -15.27377 -14.88642 -14.83294 -14.55562 -14.41433 -14.15270 -13.93014 -13.75132 -13.56191 -13.34808 -13.07024 -12.91625 -12.67716 -12.61394 -12.39692 -12.31023 -12.16141 -11.95569 -11.75964 -11.57550 -11.54641 -11.37201 -11.25801 -10.90177 -10.72199 -10.67476 -10.63130 -10.41876 -10.11816 -9.98676 -9.66263 -9.33866 -9.11826 -8.81793 -8.18459 -7.25638 -6.37465 -4.03763 2.20142 2.20899 2.78139 2.90175 3.20821 3.25212 3.29299 3.43578 3.55595 4.18734 4.22394 4.27557 4.46361 4.47392 4.53018 4.61778 4.73134 4.81789 4.90066 4.93565 4.97154 5.01553 5.05548 5.15424 5.18821 5.21919 5.25540 5.28131 5.33312 5.46172 5.47238 5.52832 5.58200 5.65409 5.67238 5.68271 5.70599 5.70950 5.77905 5.80806 6.18152 6.34789 6.38261 6.61792 6.79755 6.84644 7.07348 7.27327 7.35682 7.47628 7.67000 7.85133 8.08590 8.33228 8.98042 9.61052 10.70296 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.001730 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.507880 B =16179.265400 C =17171.863166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.392 6.392 4 C 0.062 3.938 5 C -0.077 4.077 6 C -0.144 4.144 7 C 0.155 3.845 8 N -0.737 5.737 9 C 0.508 3.492 10 O -0.521 6.521 11 C -0.081 4.081 12 C -0.161 4.161 13 C -0.062 4.062 14 C -0.191 4.191 15 C 0.162 3.838 16 O -0.218 6.218 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.219 4.219 26 C -0.058 4.058 27 C -0.163 4.163 28 C -0.164 4.164 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.133 0.867 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.254 3.667 -20.979 32.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.312 6.312 4 C -0.014 4.014 5 C -0.114 4.114 6 C -0.144 4.144 7 C 0.032 3.968 8 N -0.391 5.391 9 C 0.295 3.705 10 O -0.396 6.396 11 C -0.121 4.121 12 C -0.162 4.162 13 C -0.080 4.080 14 C -0.210 4.210 15 C 0.110 3.890 16 O -0.124 6.124 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.238 4.238 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.201 4.201 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.782 2.845 -20.575 31.575 hybrid contribution 0.005 -0.271 0.400 0.484 sum -23.777 2.573 -20.174 31.288 Atomic orbital electron populations 1.21747 0.93705 1.02312 1.03104 1.22460 0.95600 0.83703 1.00202 1.87847 1.21247 1.26601 1.95492 1.22487 0.81002 0.97341 1.00579 1.20965 0.91538 0.95366 1.03528 1.21623 0.94458 1.04073 0.94275 1.20788 0.99073 0.90682 0.86302 1.46081 1.52424 1.17935 1.22647 1.21029 0.77865 0.89505 0.82129 1.90753 1.46944 1.25012 1.76847 1.20425 1.00900 0.96907 0.93894 1.18708 0.93305 1.07507 0.96675 1.20402 0.98041 0.96402 0.93195 1.20150 0.90839 1.08173 1.01869 1.19120 0.90267 0.91905 0.87745 1.83569 1.18495 1.71551 1.38741 1.20773 0.76851 1.36948 1.11822 0.87648 1.24460 0.94212 0.96595 0.98748 1.69645 1.00868 1.44039 1.37329 0.86180 0.79347 0.80199 0.81172 1.19906 1.20823 1.18375 1.21224 1.00907 1.05322 0.96388 1.20563 0.92409 0.97663 0.97026 1.23095 1.02593 1.00536 0.93830 1.23038 1.03041 0.90867 1.03142 0.91060 0.91795 0.91923 0.93436 0.93277 0.93143 0.92988 0.90518 0.90704 0.91135 0.91325 0.76714 0.88899 0.88905 0.87215 0.86566 0.91112 0.84976 0.87561 0.88280 0.88343 0.88320 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.39 6.66 37.16 0.25 0.64 16 3 O -0.39 -3.49 10.34 -35.23 -0.36 -3.85 16 4 C 0.06 0.47 5.69 37.16 0.21 0.68 16 5 C -0.08 -0.50 5.47 -26.73 -0.15 -0.64 16 6 C -0.14 -0.92 1.63 -154.51 -0.25 -1.17 16 7 C 0.16 1.40 5.61 -4.05 -0.02 1.38 16 8 N -0.74 -6.85 5.42 -60.30 -0.33 -7.18 16 9 C 0.51 6.80 7.82 -10.98 -0.09 6.71 16 10 O -0.52 -9.70 16.03 5.56 0.09 -9.61 16 11 C -0.08 -0.98 5.83 -29.03 -0.17 -1.15 16 12 C -0.16 -2.74 4.38 -104.57 -0.46 -3.20 16 13 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 14 C -0.19 -3.98 9.99 -39.39 -0.39 -4.37 16 15 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.22 -5.96 8.59 0.05 0.00 -5.96 16 17 C -0.39 -11.24 9.95 30.88 0.31 -10.93 16 18 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.90 13.96 55.48 0.77 -25.12 16 21 Si 0.91 22.17 28.62 -169.99 -4.86 17.31 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 25 C -0.22 -4.94 9.17 -39.39 -0.36 -5.31 16 26 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 27 C -0.16 -0.93 9.90 -26.73 -0.26 -1.20 16 28 C -0.16 -0.89 9.57 -26.73 -0.26 -1.15 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.41 6.83 -51.93 -0.35 0.06 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 38 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 39 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 40 H 0.40 2.58 8.27 -40.82 -0.34 2.24 16 41 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.13 3.11 5.64 -52.49 -0.30 2.81 16 47 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 48 H 0.10 0.59 8.04 -51.93 -0.42 0.18 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 424.55 15.07 6.40 6.40 Total: -1.00 -34.08 424.55 -9.01 -43.09 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.33 Total: 2.75 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.38 Total: -17.82 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.45 Total: -32.30 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.27 Total: -19.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.08 -9.01 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158718552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.092 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds