Wall clock time and date at job start Wed Apr 1 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46974 * 2 1 4 4 C 1.42902 * 113.99796 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46966 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46972 * 184.98645 * 5 4 3 7 7 C 1.52995 * 115.55037 * 296.51820 * 6 5 4 8 8 N 1.46494 * 109.47153 * 271.19495 * 7 6 5 9 9 C 1.34784 * 120.00183 * 185.03868 * 8 7 6 10 10 O 1.21279 * 119.99424 * 359.97438 * 9 8 7 11 11 C 1.50700 * 119.99894 * 179.72926 * 9 8 7 12 12 C 1.50704 * 109.46640 * 180.27532 * 11 9 8 13 13 C 1.38299 * 119.92844 * 269.72429 * 12 11 9 14 14 C 1.38104 * 120.06807 * 179.73047 * 13 12 11 15 15 C 1.38883 * 119.92712 * 0.56393 * 14 13 12 16 16 O 1.35747 * 120.06870 * 179.68587 * 15 14 13 17 17 C 1.34833 * 117.00308 * 174.44222 * 16 15 14 18 18 H 1.08002 * 119.99408 * 5.06361 * 17 16 15 19 19 C 1.38649 * 120.00170 * 185.05599 * 17 16 15 20 20 N 1.31556 * 120.00293 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 120.00057 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47141 * 89.99624 * 21 19 17 23 23 H 1.48494 * 109.46694 * 209.99403 * 21 19 17 24 24 H 1.48496 * 109.46812 * 329.99751 * 21 19 17 25 25 C 1.38880 * 119.86521 * 359.71011 * 15 14 13 26 26 C 1.38101 * 119.92665 * 359.97438 * 25 15 14 27 27 C 1.52998 * 117.51533 * 82.22079 * 6 5 4 28 28 C 1.52997 * 60.00329 * 107.47829 * 27 6 5 29 29 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 300.00108 * 1 2 3 31 31 H 1.09001 * 109.46621 * 60.00281 * 1 2 3 32 32 H 1.08993 * 109.47451 * 239.99466 * 2 1 3 33 33 H 1.09001 * 109.46621 * 119.99718 * 2 1 3 34 34 H 1.09005 * 109.47298 * 59.99869 * 4 3 2 35 35 H 1.09003 * 109.47243 * 299.99642 * 4 3 2 36 36 H 1.08994 * 109.47248 * 64.98863 * 5 4 3 37 37 H 1.08996 * 109.47247 * 304.98416 * 5 4 3 38 38 H 1.08996 * 109.46965 * 151.19780 * 7 6 5 39 39 H 1.09005 * 109.47340 * 31.20003 * 7 6 5 40 40 H 0.97000 * 120.00134 * 5.04315 * 8 7 6 41 41 H 1.09000 * 109.46795 * 300.27267 * 11 9 8 42 42 H 1.08994 * 109.47651 * 60.27419 * 11 9 8 43 43 H 1.07994 * 119.96800 * 359.97422 * 13 12 11 44 44 H 1.07991 * 120.03575 * 180.27391 * 14 13 12 45 45 H 0.96992 * 120.00339 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.03787 * 179.97438 * 25 15 14 47 47 H 1.08008 * 119.96429 * 180.02562 * 26 25 15 48 48 H 1.08998 * 117.49736 * 214.96966 * 27 6 5 49 49 H 1.09002 * 117.50001 * 359.97438 * 27 6 5 50 50 H 1.08994 * 117.50280 * 252.51329 * 28 27 6 51 51 H 1.09001 * 117.50307 * 107.48159 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3454 3.0605 -0.1249 7 6 6.1521 2.4721 1.0343 8 7 6.3405 3.4943 2.0666 9 6 7.1115 3.2332 3.1409 10 8 7.6488 2.1517 3.2531 11 6 7.3102 4.2869 4.1997 12 6 8.2122 3.7490 5.2806 13 6 7.6685 3.0933 6.3701 14 6 8.4928 2.5944 7.3595 15 6 9.8683 2.7619 7.2652 16 8 10.6807 2.2782 8.2392 17 6 12.0095 2.3723 8.0308 18 1 12.3841 2.8899 7.1601 19 6 12.8949 1.8049 8.9344 20 7 14.1914 1.8963 8.7308 21 14 12.2468 0.9092 10.4402 22 1 12.0468 -0.5258 10.1147 23 1 13.2262 1.0332 11.5495 24 1 10.9523 1.5081 10.8533 25 6 10.4108 3.4257 6.1726 26 6 9.5816 3.9166 5.1834 27 6 5.9496 2.9632 -1.5271 28 6 5.8998 4.3125 -0.8076 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8341 0.9764 -0.8892 35 1 3.8333 0.9767 0.8909 36 1 3.4988 3.4020 0.9307 37 1 3.3502 3.4409 -0.8426 38 1 7.1242 2.1409 0.6693 39 1 5.6144 1.6233 1.4572 40 1 5.9104 4.3591 1.9771 41 1 7.7660 5.1701 3.7523 42 1 6.3459 4.5549 4.6313 43 1 6.5985 2.9679 6.4454 44 1 8.0680 2.0786 8.2078 45 1 14.8107 1.4990 9.3627 46 1 11.4800 3.5579 6.0967 47 1 10.0029 4.4327 4.3332 48 1 6.9218 2.4800 -1.6238 49 1 5.2643 2.8118 -2.3611 50 1 5.1817 5.0490 -1.1681 51 1 6.8393 4.7170 -0.4308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158718552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:41 Heat of formation + Delta-G solvation = -94.690754 kcal Electronic energy + Delta-G solvation = -29105.396002 eV Core-core repulsion = 24970.150372 eV Total energy + Delta-G solvation = -4135.245630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.19758 -40.62959 -39.64800 -38.61927 -38.19161 -35.02325 -34.52202 -32.99438 -32.97322 -31.80723 -30.77825 -29.09747 -27.56008 -26.31004 -24.48463 -23.71991 -23.69987 -23.24440 -22.40874 -21.21398 -20.08440 -19.80225 -19.10330 -17.96336 -17.69636 -17.31753 -17.06779 -16.81603 -16.39363 -16.24592 -15.77451 -15.72047 -15.59124 -15.38098 -15.25184 -15.11034 -14.73340 -14.39946 -14.34107 -14.24705 -14.07564 -13.68186 -13.35128 -13.16005 -13.04730 -12.84546 -12.75637 -12.53873 -12.43027 -12.38046 -12.31122 -12.25074 -12.06289 -11.93688 -11.90269 -11.28329 -11.20626 -11.08790 -10.90788 -10.62338 -10.57429 -10.01874 -9.78830 -8.97959 -8.50833 -6.23390 0.58516 0.61990 1.29502 1.34374 1.50752 1.75203 2.16717 2.27393 2.59420 2.78090 2.97007 3.07800 3.19243 3.63999 3.68958 3.85799 3.93594 4.00889 4.04068 4.12742 4.15202 4.21620 4.25431 4.27166 4.44958 4.46163 4.48117 4.50939 4.57819 4.65011 4.71223 4.77688 4.81273 4.82653 4.84901 4.98881 5.00526 5.01925 5.06399 5.13387 5.20662 5.25644 5.26810 5.28198 5.37491 5.50356 5.56685 5.74094 5.79662 5.91093 6.24372 6.24992 6.66306 6.83381 7.38443 7.58170 8.60960 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.001730 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.507880 B =16179.265400 C =17171.863166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.409 6.409 4 C 0.060 3.940 5 C -0.069 4.069 6 C -0.142 4.142 7 C 0.156 3.844 8 N -0.714 5.714 9 C 0.509 3.491 10 O -0.583 6.583 11 C -0.079 4.079 12 C -0.137 4.137 13 C -0.060 4.060 14 C -0.194 4.194 15 C 0.117 3.883 16 O -0.246 6.246 17 C -0.401 4.401 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.264 1.264 24 H -0.262 1.262 25 C -0.239 4.239 26 C -0.065 4.065 27 C -0.164 4.164 28 C -0.152 4.152 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.417 0.583 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.128 0.872 45 H 0.285 0.715 46 H 0.106 0.894 47 H 0.133 0.867 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.115 0.885 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.007 4.934 -22.476 36.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.330 6.330 4 C -0.016 4.016 5 C -0.106 4.106 6 C -0.143 4.143 7 C 0.032 3.968 8 N -0.368 5.368 9 C 0.297 3.703 10 O -0.462 6.462 11 C -0.119 4.119 12 C -0.138 4.138 13 C -0.078 4.078 14 C -0.213 4.213 15 C 0.068 3.932 16 O -0.154 6.154 17 C -0.477 4.477 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.189 1.189 24 H -0.187 1.187 25 C -0.258 4.258 26 C -0.083 4.083 27 C -0.202 4.202 28 C -0.189 4.189 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.170 0.830 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.151 0.849 48 H 0.111 0.889 49 H 0.127 0.873 50 H 0.133 0.867 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -27.598 4.173 -22.128 35.619 hybrid contribution 0.912 -0.553 0.549 1.199 sum -26.687 3.620 -21.579 34.510 Atomic orbital electron populations 1.21760 0.92815 1.03296 1.02783 1.22626 0.96424 0.83098 1.00556 1.87823 1.21874 1.27700 1.95563 1.22546 0.80548 0.98175 1.00353 1.20905 0.91326 0.94603 1.03796 1.21410 0.94029 1.05224 0.93599 1.20752 0.98508 0.90591 0.86968 1.45879 1.50820 1.18708 1.21352 1.21185 0.77494 0.88712 0.82921 1.90758 1.49693 1.27477 1.78314 1.20558 1.02006 0.97141 0.92152 1.19323 0.93190 1.04115 0.97172 1.20949 0.99882 0.94853 0.92114 1.20508 0.89621 1.08022 1.03157 1.19682 0.91470 0.93633 0.88396 1.83507 1.17456 1.73993 1.40455 1.20712 0.78307 1.37234 1.11436 0.90372 1.25295 0.94387 0.97476 1.01743 1.69728 1.01942 1.45826 1.38926 0.85202 0.78758 0.78832 0.77800 1.19303 1.18863 1.18673 1.21255 1.00344 1.06557 0.97647 1.20914 0.93327 0.97379 0.96673 1.23161 1.02511 1.00891 0.93621 1.23109 1.03104 0.90694 1.02012 0.89475 0.92362 0.91937 0.92614 0.93403 0.92654 0.93970 0.90634 0.89889 0.92814 0.92462 0.74544 0.85470 0.84792 0.82962 0.85437 0.90562 0.87600 0.84913 0.88863 0.87267 0.86718 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.41 -6.72 10.34 -148.98 -1.54 -8.26 16 4 C 0.06 0.81 5.69 71.98 0.41 1.22 16 5 C -0.07 -0.72 5.47 30.60 0.17 -0.55 16 6 C -0.14 -1.46 1.63 -52.18 -0.09 -1.54 16 7 C 0.16 2.55 5.61 86.38 0.48 3.03 16 8 N -0.71 -10.90 5.42 -463.07 -2.51 -13.41 16 9 C 0.51 11.95 7.82 87.66 0.69 12.64 16 10 O -0.58 -20.88 16.03 -3.03 -0.05 -20.93 16 11 C -0.08 -1.50 5.83 29.10 0.17 -1.33 16 12 C -0.14 -4.24 4.38 -19.83 -0.09 -4.33 16 13 C -0.06 -1.96 9.69 22.25 0.22 -1.75 16 14 C -0.19 -7.96 9.99 22.39 0.22 -7.73 16 15 C 0.12 5.85 6.65 22.58 0.15 6.00 16 16 O -0.25 -14.12 8.59 -22.74 -0.20 -14.31 16 17 C -0.40 -24.71 9.95 67.92 0.68 -24.04 16 18 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 19 C 0.01 0.55 5.49 84.83 0.47 1.02 16 20 N -0.92 -56.79 13.96 21.61 0.30 -56.49 16 21 Si 0.97 47.10 28.62 68.60 1.96 49.06 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 25 C -0.24 -11.25 9.17 22.39 0.21 -11.05 16 26 C -0.06 -2.40 9.69 22.25 0.22 -2.18 16 27 C -0.16 -1.50 9.90 30.59 0.30 -1.20 16 28 C -0.15 -1.15 9.57 30.59 0.29 -0.86 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.04 0.64 6.83 -2.39 -0.02 0.62 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 38 H 0.05 1.09 7.88 -2.39 -0.02 1.07 16 39 H 0.06 1.10 6.54 -2.38 -0.02 1.08 16 40 H 0.42 3.46 8.27 -92.71 -0.77 2.70 16 41 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 42 H 0.13 1.59 8.08 -2.39 -0.02 1.57 16 43 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.13 4.83 8.06 -2.92 -0.02 4.81 16 45 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 46 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 47 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 48 H 0.09 0.98 8.04 -2.39 -0.02 0.96 16 49 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -80.24 424.55 3.84 -76.39 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.16 Total: 20.23 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 5.71 Total: -32.30 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -2.21 Total: -69.89 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.78 Total: -43.50 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.96 Total: 49.06 kcal Total: -80.24 3.84 -76.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158718552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.297 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds