Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21256 * 119.99814 * 2 1 4 4 C 1.47179 * 119.99849 * 180.02562 * 2 1 3 5 5 C 1.39871 * 120.14712 * 359.97438 * 4 2 1 6 6 C 1.37890 * 119.93704 * 180.02562 * 5 4 2 7 7 C 1.38337 * 120.23755 * 359.74140 * 6 5 4 8 8 C 1.38856 * 120.28856 * 0.51715 * 7 6 5 9 9 O 1.35912 * 119.96907 * 179.76539 * 8 7 6 10 10 C 1.42903 * 116.99996 * 359.71986 * 9 8 7 11 11 C 1.52995 * 109.47471 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47089 * 54.99456 * 11 10 9 13 13 O 1.42903 * 109.46851 * 295.00271 * 11 10 9 14 14 C 1.52999 * 109.47342 * 174.99961 * 11 10 9 15 15 N 1.46899 * 109.46799 * 186.79648 * 14 11 10 16 16 C 1.46900 * 111.00379 * 286.26596 * 15 14 11 17 17 C 1.50698 * 109.47064 * 171.73449 * 16 15 14 18 18 H 1.07993 * 120.00502 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99494 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99449 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47327 * 90.00070 * 21 19 17 23 23 H 1.48506 * 109.47077 * 209.99807 * 21 19 17 24 24 H 1.48497 * 109.47206 * 329.99347 * 21 19 17 25 25 C 1.46905 * 111.00035 * 162.31255 * 15 14 11 26 26 C 1.53006 * 109.46704 * 287.97256 * 25 15 14 27 27 C 1.53000 * 117.49678 * 116.01860 * 26 25 15 28 28 C 1.53002 * 117.49520 * 184.67959 * 26 25 15 29 29 C 1.38422 * 120.05871 * 359.48351 * 8 7 6 30 30 H 1.09002 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46987 * 299.99815 * 1 2 3 32 32 H 1.08997 * 109.47299 * 59.99299 * 1 2 3 33 33 H 1.08004 * 120.03411 * 359.97438 * 5 4 2 34 34 H 1.08006 * 119.88339 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.85645 * 180.27645 * 7 6 5 36 36 H 1.09003 * 109.47281 * 59.99896 * 10 9 8 37 37 H 1.09004 * 109.46946 * 300.00234 * 10 9 8 38 38 H 0.96695 * 114.00164 * 299.99269 * 13 11 10 39 39 H 1.08993 * 109.47080 * 66.79828 * 14 11 10 40 40 H 1.08993 * 109.46755 * 306.79399 * 14 11 10 41 41 H 1.09002 * 109.46736 * 291.73553 * 16 15 14 42 42 H 1.09004 * 109.47050 * 51.73229 * 16 15 14 43 43 H 0.97005 * 120.00169 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.47752 * 167.97365 * 25 15 14 45 45 H 1.09000 * 109.47166 * 47.96383 * 25 15 14 46 46 H 1.08998 * 115.54937 * 330.34585 * 26 25 15 47 47 H 1.09004 * 117.49782 * 214.99739 * 27 26 25 48 48 H 1.08998 * 117.50094 * 0.02562 * 27 26 25 49 49 H 1.08999 * 117.49939 * 359.97393 * 28 26 25 50 50 H 1.08996 * 117.49819 * 144.99882 * 28 26 25 51 51 H 1.08002 * 120.11764 * 180.24011 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 -0.0006 5 6 1.5466 -2.4877 -0.0006 6 6 2.2404 -3.6794 -0.0006 7 6 3.6238 -3.6801 -0.0060 8 6 4.3247 -2.4814 -0.0006 9 8 5.6838 -2.4897 -0.0011 10 6 6.3248 -3.7669 -0.0011 11 6 7.8428 -3.5758 -0.0011 12 1 8.1296 -2.9456 0.8407 13 8 8.2442 -2.9514 -1.2222 14 6 8.5283 -4.9379 0.1246 15 7 9.9753 -4.7444 0.2882 16 6 10.5987 -4.3379 -0.9783 17 6 12.0347 -3.9538 -0.7309 18 1 12.4436 -4.0068 0.2672 19 6 12.8269 -3.5357 -1.7791 20 7 14.0799 -3.2000 -1.5631 21 14 12.1199 -3.4447 -3.5057 22 1 11.5393 -2.0969 -3.7325 23 1 13.1986 -3.6920 -4.4960 24 1 11.0599 -4.4730 -3.6614 25 6 10.6113 -5.9559 0.8229 26 6 10.2310 -6.1240 2.2954 27 6 9.4062 -7.3552 2.6758 28 6 10.8839 -7.2727 3.0669 29 6 3.6406 -1.2781 -0.0006 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 0.4666 -2.4911 0.0003 34 1 1.7019 -4.6156 -0.0010 35 1 4.1609 -4.6170 -0.0105 36 1 6.0282 -4.3224 -0.8909 37 1 6.0288 -4.3220 0.8891 38 1 8.0205 -3.4577 -2.0150 39 1 8.3395 -5.5240 -0.7746 40 1 8.1319 -5.4653 0.9921 41 1 10.5609 -5.1673 -1.6845 42 1 10.0602 -3.4846 -1.3909 43 1 14.6375 -2.9062 -2.3005 44 1 11.6941 -5.8669 0.7352 45 1 10.2712 -6.8242 0.2585 46 1 10.0355 -5.1997 2.8389 47 1 8.6680 -7.2409 3.4697 48 1 9.1348 -8.0457 1.8772 49 1 11.5840 -7.9089 2.5254 50 1 11.1179 -7.1041 4.1180 51 1 4.1848 -0.3453 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177029692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = -59.594258 kcal Electronic energy + Delta-G solvation = -29997.773817 eV Core-core repulsion = 25864.050085 eV Total energy + Delta-G solvation = -4133.723732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69532 -39.56562 -38.50295 -37.50378 -36.69143 -34.86985 -32.43797 -32.08495 -31.53658 -30.39533 -29.19341 -27.92720 -26.79286 -24.53710 -23.48091 -22.74403 -22.24427 -21.55760 -20.64256 -20.26701 -19.73169 -18.21940 -17.13281 -16.67903 -16.59435 -16.42051 -15.98760 -15.71181 -15.56645 -15.38182 -15.04577 -14.90046 -14.36572 -14.20421 -14.08307 -13.88915 -13.68639 -13.23414 -12.92990 -12.89434 -12.77808 -12.46336 -12.32541 -12.19003 -12.02753 -11.95091 -11.66895 -11.42952 -11.34503 -11.20339 -10.94225 -10.76629 -10.57086 -10.43813 -10.16125 -10.13659 -9.83338 -9.66855 -9.53221 -9.41555 -8.95280 -8.55737 -8.45513 -7.44374 -5.99156 -3.94736 0.26476 1.06222 2.05535 2.82413 3.34273 3.40075 3.41457 3.42693 3.71010 4.04490 4.35074 4.44733 4.48133 4.49126 4.53932 4.53981 4.69482 4.81502 4.89026 4.96154 4.98644 5.05422 5.12495 5.16752 5.18758 5.23171 5.32601 5.33702 5.35707 5.50664 5.54754 5.56712 5.71921 5.78095 5.84337 5.88093 5.94871 5.98025 6.04464 6.17998 6.22591 6.26476 6.30446 6.44048 6.75062 6.94814 7.10334 7.14460 7.16132 7.71893 7.86758 7.91960 8.04946 8.70376 9.08832 9.63016 11.14122 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010622 B = 0.002379 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.464912 B =11765.427193 C =13698.914180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.092 4.092 7 C -0.182 4.182 8 C 0.126 3.874 9 O -0.297 6.297 10 C 0.028 3.972 11 C 0.117 3.883 12 H 0.118 0.882 13 O -0.534 6.534 14 C 0.028 3.972 15 N -0.516 5.516 16 C 0.141 3.859 17 C -0.506 4.506 18 H 0.079 0.921 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.877 3.123 22 H -0.274 1.274 23 H -0.290 1.290 24 H -0.270 1.270 25 C 0.089 3.911 26 C -0.134 4.134 27 C -0.194 4.194 28 C -0.181 4.181 29 C -0.095 4.095 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.366 0.634 39 H 0.029 0.971 40 H 0.077 0.923 41 H -0.021 1.021 42 H 0.067 0.933 43 H 0.262 0.738 44 H 0.098 0.902 45 H 0.020 0.980 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.988 -5.330 4.761 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.328 6.328 4 C -0.136 4.136 5 C -0.137 4.137 6 C -0.110 4.110 7 C -0.200 4.200 8 C 0.080 3.920 9 O -0.210 6.210 10 C -0.048 4.048 11 C 0.057 3.943 12 H 0.135 0.865 13 O -0.338 6.338 14 C -0.102 4.102 15 N -0.240 5.240 16 C 0.016 3.984 17 C -0.544 4.544 18 H 0.097 0.903 19 C -0.134 4.134 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.199 1.199 23 H -0.216 1.216 24 H -0.195 1.195 25 C -0.039 4.039 26 C -0.153 4.153 27 C -0.231 4.231 28 C -0.218 4.218 29 C -0.114 4.114 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.212 0.788 39 H 0.047 0.953 40 H 0.095 0.905 41 H -0.003 1.003 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.116 0.884 45 H 0.038 0.962 46 H 0.127 0.873 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.110 0.890 50 H 0.108 0.892 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -27.052 -3.708 5.406 27.835 hybrid contribution -0.670 -1.555 -1.841 2.501 sum -27.722 -5.263 3.565 28.442 Atomic orbital electron populations 1.22235 0.93499 1.04912 1.05071 1.22510 0.91723 0.87467 0.71062 1.90573 1.72076 1.34293 1.35863 1.20299 0.93362 0.95099 1.04876 1.21362 1.00100 0.91308 1.00956 1.20917 0.93369 0.98288 0.98453 1.21572 0.95581 0.97442 1.05453 1.18988 0.83378 0.93693 0.95984 1.86236 1.15233 1.31668 1.87832 1.23753 0.95366 0.83909 1.01787 1.21983 0.87092 0.95622 0.89600 0.86466 1.86786 1.82121 1.50114 1.14815 1.22604 0.92414 0.94830 1.00343 1.61828 0.99350 1.31713 1.31071 1.20688 0.96594 0.95845 0.85300 1.21039 0.93068 1.43666 0.96657 0.90319 1.24884 0.94747 0.95072 0.98728 1.69900 1.06569 1.45822 1.31949 0.86834 0.78744 0.79004 0.84923 1.19935 1.21615 1.19530 1.21664 1.01600 0.90182 0.90452 1.22457 1.02604 0.92843 0.97370 1.23050 0.94238 1.02416 1.03411 1.22904 0.95244 1.03083 1.00598 1.20711 0.92792 0.97328 1.00531 0.89667 0.88654 0.88660 0.84753 0.85106 0.84949 0.91823 0.91039 0.78772 0.95319 0.90491 1.00342 0.91536 0.92805 0.88353 0.96186 0.87259 0.89519 0.89482 0.88974 0.89157 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.99 10.19 36.01 0.37 -0.62 16 2 C 0.39 3.71 7.23 -30.68 -0.22 3.49 16 3 O -0.45 -6.04 17.09 5.58 0.10 -5.94 16 4 C -0.14 -1.31 5.87 -105.08 -0.62 -1.92 16 5 C -0.12 -0.84 9.44 -39.10 -0.37 -1.21 16 6 C -0.09 -0.66 10.02 -39.67 -0.40 -1.06 16 7 C -0.18 -1.64 9.04 -39.32 -0.36 -1.99 16 8 C 0.13 1.47 6.68 -39.28 -0.26 1.21 16 9 O -0.30 -3.99 10.10 -24.32 -0.25 -4.24 16 10 C 0.03 0.31 4.37 37.16 0.16 0.47 16 11 C 0.12 1.70 3.45 -26.73 -0.09 1.61 16 12 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 13 O -0.53 -9.10 10.27 -40.09 -0.41 -9.52 16 14 C 0.03 0.41 4.62 -3.83 -0.02 0.39 16 15 N -0.52 -10.09 4.41 -236.07 -1.04 -11.13 16 16 C 0.14 3.32 3.55 -4.98 -0.02 3.30 16 17 C -0.51 -14.30 8.82 -34.44 -0.30 -14.60 16 18 H 0.08 2.43 7.38 -52.49 -0.39 2.04 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 25 C 0.09 1.62 5.09 -3.82 -0.02 1.60 16 26 C -0.13 -2.00 4.97 -90.62 -0.45 -2.45 16 27 C -0.19 -2.34 10.02 -26.69 -0.27 -2.61 16 28 C -0.18 -2.35 10.26 -26.69 -0.27 -2.63 16 29 C -0.09 -1.13 9.54 -38.94 -0.37 -1.50 16 30 H 0.08 0.23 5.60 -51.93 -0.29 -0.06 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.13 0.51 5.92 -52.48 -0.31 0.20 16 34 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.97 6.28 -52.49 -0.33 0.64 16 36 H 0.06 0.60 7.64 -51.93 -0.40 0.20 16 37 H 0.07 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.37 5.00 9.03 45.56 0.41 5.42 16 39 H 0.03 0.41 8.03 -51.93 -0.42 -0.01 16 40 H 0.08 0.98 7.01 -51.93 -0.36 0.62 16 41 H -0.02 -0.50 7.19 -51.93 -0.37 -0.88 16 42 H 0.07 1.58 4.42 -51.93 -0.23 1.35 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.10 2.11 6.45 -51.93 -0.33 1.78 16 45 H 0.02 0.35 7.79 -51.93 -0.40 -0.06 16 46 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 49 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.14 1.86 7.65 -52.49 -0.40 1.46 16 LS Contribution 412.12 15.07 6.21 6.21 Total: -1.00 -34.76 412.12 -10.09 -44.85 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.19 Total: 6.51 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -3.60 Total: -16.68 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.27 Total: -38.29 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.56 Total: -19.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.76 -10.09 -44.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177029692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.748 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds