Wall clock time and date at job start Wed Apr 1 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00292 * 2 1 4 4 C 1.46909 * 110.99835 * 123.95040 * 2 1 3 5 5 C 1.52999 * 109.46816 * 66.04399 * 4 2 1 6 6 N 1.46504 * 109.46758 * 180.02562 * 5 4 2 7 7 C 1.34971 * 125.97381 * 125.01988 * 6 5 4 8 8 C 1.35237 * 107.85734 * 179.71432 * 7 6 5 9 9 C 1.40403 * 107.86903 * 0.39633 * 8 7 6 10 10 N 1.40187 * 125.97567 * 179.86739 * 9 8 7 11 11 C 1.34774 * 119.99816 * 359.70876 * 10 9 8 12 12 O 1.21603 * 119.99982 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.40191 * 119.99918 * 179.97438 * 13 11 10 15 15 C 1.40395 * 125.97261 * 0.02562 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.71403 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.97121 * 179.97438 * 14 13 11 28 28 N 1.31209 * 108.05540 * 359.59758 * 9 8 7 29 29 H 1.08995 * 109.47654 * 296.05359 * 1 2 3 30 30 H 1.09004 * 109.47120 * 56.04784 * 1 2 3 31 31 H 1.09005 * 109.47349 * 176.04750 * 1 2 3 32 32 H 1.08997 * 109.47296 * 183.95154 * 3 2 1 33 33 H 1.09004 * 109.46772 * 303.95050 * 3 2 1 34 34 H 1.08997 * 109.47390 * 63.94685 * 3 2 1 35 35 H 1.09003 * 109.46883 * 306.04897 * 4 2 1 36 36 H 1.08993 * 109.47029 * 186.04602 * 4 2 1 37 37 H 1.09003 * 109.46988 * 60.00562 * 5 4 2 38 38 H 1.08993 * 109.47488 * 299.99923 * 5 4 2 39 39 H 1.08000 * 126.06748 * 359.96036 * 7 6 5 40 40 H 1.08002 * 126.06998 * 180.26516 * 8 7 6 41 41 H 0.96998 * 120.00364 * 179.71243 * 10 9 8 42 42 H 0.96998 * 120.00152 * 0.02562 * 13 11 10 43 43 H 1.07999 * 126.07114 * 359.97438 * 15 14 13 44 44 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 45 45 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 46 46 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 47 47 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6313 -2.2426 0.9705 6 7 2.1558 -3.0063 2.1054 7 6 1.4387 -3.8080 2.9208 8 6 2.2853 -4.3335 3.8351 9 6 3.5687 -3.8272 3.5749 10 7 4.7329 -4.1233 4.2976 11 6 4.6766 -4.9601 5.3526 12 8 3.6160 -5.4586 5.6773 13 7 5.7959 -5.2452 6.0471 14 6 5.7372 -6.1152 7.1448 15 6 4.5857 -6.7570 7.6278 16 6 4.9462 -7.5116 8.6906 17 7 6.2722 -7.3493 8.8828 18 6 7.0739 -7.9841 9.9318 19 6 8.2230 -8.7300 9.3039 20 1 8.3442 -8.7307 8.2307 21 6 9.1196 -9.4115 10.0993 22 7 8.9750 -9.4062 11.4065 23 14 10.5443 -10.3354 9.3210 24 1 11.3604 -10.9740 10.3847 25 1 10.0165 -11.3805 8.4074 26 1 11.3887 -9.3863 8.5520 27 7 6.7490 -6.4728 7.8998 28 7 3.4892 -3.0330 2.5336 29 1 -0.3634 0.4513 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0253 -0.0708 32 1 3.0827 1.3431 -0.0708 33 1 1.5898 1.9162 -0.8525 34 1 1.7043 1.8724 0.9232 35 1 1.5609 -0.3872 2.0629 36 1 3.0796 -0.6611 1.1757 37 1 2.0657 -2.6214 0.0453 38 1 0.5471 -2.3474 0.9325 39 1 0.3779 -3.9992 2.8524 40 1 2.0207 -5.0192 4.6265 41 1 5.5789 -3.7259 4.0384 42 1 6.6419 -4.8479 5.7879 43 1 3.5896 -6.6675 7.2202 44 1 4.2891 -8.1318 9.2824 45 1 6.4516 -8.6814 10.4929 46 1 7.4615 -7.2200 10.6055 47 1 8.2353 -8.9263 11.8107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186606098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:09 Heat of formation + Delta-G solvation = 160.140337 kcal Electronic energy + Delta-G solvation = -28643.490037 eV Core-core repulsion = 24480.339871 eV Total energy + Delta-G solvation = -4163.150166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60905 -40.76806 -39.65047 -38.18778 -35.43964 -34.83267 -33.73666 -32.94038 -30.85976 -30.24967 -29.40825 -28.65944 -28.16611 -26.31988 -24.85676 -23.47471 -22.57027 -21.90432 -21.49000 -20.80591 -20.13900 -19.87969 -17.97735 -17.69968 -17.18558 -16.86818 -16.31901 -15.99163 -15.89241 -15.70425 -15.22698 -14.92460 -14.72100 -14.56398 -14.11268 -13.97968 -13.78853 -13.44040 -13.24472 -13.07248 -12.98916 -12.67299 -12.46517 -12.30838 -12.26036 -12.17647 -11.82753 -11.62241 -11.19455 -11.05099 -10.84147 -10.79907 -10.50190 -10.15848 -10.11954 -9.74529 -9.05490 -9.02934 -8.99758 -8.58081 -8.43057 -8.19953 -7.51696 -6.57845 -4.31988 1.62164 1.69572 2.37626 2.45933 2.74413 3.14486 3.32462 3.38513 3.40088 3.51892 3.59537 3.73641 4.08509 4.12527 4.41360 4.41478 4.54102 4.62261 4.74294 4.76732 4.89184 5.01933 5.05390 5.15685 5.27238 5.29751 5.34787 5.35549 5.41140 5.48357 5.65341 5.69453 6.00043 6.07101 6.31110 6.35241 6.40344 6.42387 6.61856 6.63454 6.76477 6.84415 6.85429 7.31366 7.45866 7.65271 7.82488 7.84777 8.34387 8.36721 8.53090 8.61945 9.36221 10.79730 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.001517 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.475898 B =18455.590739 C =18861.388015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.144 3.856 6 N -0.371 5.371 7 C 0.061 3.939 8 C -0.261 4.261 9 C 0.323 3.677 10 N -0.645 5.645 11 C 0.724 3.276 12 O -0.543 6.543 13 N -0.635 5.635 14 C 0.276 3.724 15 C -0.283 4.283 16 C 0.052 3.948 17 N -0.317 5.317 18 C 0.249 3.751 19 C -0.608 4.608 20 H 0.064 0.936 21 C 0.023 3.977 22 N -0.905 5.905 23 Si 1.077 2.923 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.285 1.285 27 N -0.301 5.301 28 N -0.325 5.325 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.413 0.587 42 H 0.410 0.590 43 H 0.164 0.836 44 H 0.168 0.832 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 18.209 -21.534 33.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.023 3.977 6 N -0.156 5.156 7 C -0.085 4.085 8 C -0.291 4.291 9 C 0.067 3.933 10 N -0.297 5.297 11 C 0.423 3.577 12 O -0.416 6.416 13 N -0.285 5.285 14 C 0.022 3.978 15 C -0.314 4.314 16 C -0.098 4.098 17 N -0.099 5.099 18 C 0.131 3.869 19 C -0.647 4.647 20 H 0.082 0.918 21 C -0.181 4.181 22 N -0.540 5.540 23 Si 0.904 3.096 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.212 1.212 27 N -0.132 5.132 28 N -0.156 5.156 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.193 0.807 40 H 0.193 0.807 41 H 0.248 0.752 42 H 0.246 0.754 43 H 0.181 0.819 44 H 0.186 0.814 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.687 17.454 -21.840 32.057 hybrid contribution -2.025 1.213 0.504 2.414 sum -17.713 18.667 -21.336 33.427 Atomic orbital electron populations 1.22519 0.87239 1.02483 1.00990 1.61912 1.08131 1.14483 1.42492 1.22386 1.01126 0.88019 1.00741 1.22381 1.02096 0.92326 0.91789 1.21597 0.98836 0.90543 0.86760 1.48052 1.04576 1.37545 1.25397 1.22605 0.98858 0.94689 0.92300 1.21920 0.90351 1.10501 1.06353 1.18744 0.87096 0.95627 0.91869 1.41459 1.09354 1.48688 1.30168 1.15271 0.83976 0.79391 0.79080 1.90806 1.27849 1.54341 1.68608 1.41199 1.10295 1.47691 1.29352 1.18703 0.93657 0.95103 0.90317 1.21520 1.00250 1.07400 1.02228 1.22565 0.86530 1.01252 0.99463 1.48778 1.05628 1.32689 1.22784 1.19765 0.91309 0.92266 0.83542 1.22110 1.11800 1.34714 0.96051 0.91815 1.25915 1.00881 0.96377 0.94963 1.70853 1.32000 1.40936 1.10224 0.83421 0.75091 0.76048 0.75082 1.20534 1.21233 1.21155 1.77359 1.19760 1.12904 1.03214 1.77286 0.96947 1.25688 1.15645 0.95304 0.90952 0.91098 0.90984 0.90981 0.95415 0.94101 0.89076 0.88945 0.88622 0.80696 0.80652 0.75181 0.75445 0.81888 0.81444 0.93567 0.94756 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.32 60.06 0.56 0.63 16 2 N -0.55 -3.19 5.02 -251.26 -1.26 -4.45 16 3 C 0.03 0.13 9.57 60.06 0.57 0.70 16 4 C 0.04 0.29 5.14 -3.82 -0.02 0.27 16 5 C 0.14 0.91 6.43 -4.04 -0.03 0.89 16 6 N -0.37 -3.52 3.68 -61.38 -0.23 -3.75 16 7 C 0.06 0.56 11.44 -17.24 -0.20 0.36 16 8 C -0.26 -3.21 9.61 -39.84 -0.38 -3.60 16 9 C 0.32 4.14 8.11 -154.37 -1.25 2.88 16 10 N -0.65 -7.61 5.45 -15.51 -0.08 -7.70 16 11 C 0.72 10.59 8.50 -86.92 -0.74 9.85 16 12 O -0.54 -9.20 10.60 5.28 0.06 -9.15 16 13 N -0.64 -9.62 5.45 -15.51 -0.08 -9.70 16 14 C 0.28 5.44 8.11 -154.37 -1.25 4.19 16 15 C -0.28 -5.47 9.60 -39.84 -0.38 -5.85 16 16 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 17 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 18 C 0.25 6.26 5.57 -5.19 -0.03 6.24 16 19 C -0.61 -17.05 9.24 -34.44 -0.32 -17.37 16 20 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 21 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 22 N -0.90 -26.25 13.65 55.43 0.76 -25.49 16 23 Si 1.08 24.87 29.90 -169.99 -5.08 19.78 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 28 N -0.33 -3.91 12.43 31.44 0.39 -3.52 16 29 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.07 0.22 6.47 -51.93 -0.34 -0.12 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 34 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.37 6.48 -51.93 -0.34 0.03 16 39 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.18 2.40 5.91 -52.49 -0.31 2.09 16 41 H 0.41 3.64 8.84 -40.82 -0.36 3.28 16 42 H 0.41 4.95 8.84 -40.82 -0.36 4.59 16 43 H 0.16 3.02 5.91 -52.49 -0.31 2.71 16 44 H 0.17 2.67 8.06 -52.48 -0.42 2.24 16 45 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 46 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 47 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -35.06 395.64 -9.73 -44.79 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.56 Total: 6.71 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -3.76 Total: 0.55 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.35 Total: -68.65 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.06 Total: -9.15 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.06 -9.73 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186606098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.931 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds